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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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Drug Related Gene Database Resource Report Resource Website 1+ mentions |
Drug Related Gene Database (RRID:SCR_003330) | DRG | data or information resource, database | Gene expression data from published journal articles that test hypotheses relevant to neuroscience of addiction and addictive behavior. Data types include effects of particular drug, strain, or knock out on particular gene, in particular anatomical region. Focuses on gene expression data and exposes data from investigations using DNA microarrays, polymerase chain reaction, immunohistochemistry and in-situ hybridizations. Data are available for query through NIF interface.Data submissions are welcome. | drug of abuse, gene expression, brain region, brain, american recovery and reinvestment act, brain, dna microarray, microarray, addiction |
uses: PubMed is listed by: NIF Data Federation is related to: Integrated Manually Extracted Annotation has parent organization: Neuroscience Information Framework |
NIDA | Free, Freely available | nif-0000-37443 | https://confluence.crbs.ucsd.edu/login.action?os_destination=%2Fpages%2Fviewpage.action%3FspaceKey%3DNIF%26title%3DDRG&permissionViolation=true | SCR_003330 | DRG Database, Drug Dependent Gene Database | 2026-02-14 02:06:14 | 2 | |||||
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microRNA.org Resource Report Resource Website 1000+ mentions |
microRNA.org (RRID:SCR_006997) | microRNA.org | data or information resource, database, software resource | Database of microRNA target predictions and expression profiles. Target predictions are based on a development of the miRanda algorithm which incorporates current biological knowledge on target rules and on the use of an up-to-date compendium of mammalian microRNAs. MicroRNA expression profiles are derived from a comprehensive sequencing project of a large set of mammalian tissues and cell lines of normal and disease origin. This website enables users to explore: * The set of genes that are potentially regulated by a particular microRNA. * The implied cooperativity of multiple microRNAs on a particular mRNA. * MicroRNA expression profiles in various mammalian tissues. The web resource provides users with functional information about the growing number of microRNAs and their interaction with target genes in many species and facilitates novel discoveries in microRNA gene regulation. The microRNA Target Detection Software, miRanda, is an algorithm for finding genomic targets for microRNAs. This algorithm has been written in C and is available as an open-source method under the GPL., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | microrna, gene, expression, gene regulation, FASEB list |
is listed by: OMICtools is listed by: SoftCite |
NIGMS ; Atlantic Philanthropies ; Alfred W. Bressler Scholars Endowment Fund |
PMID:18158296 | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-03127, OMICS_00402 | SCR_006997 | microRNA.org - Targets and Expression | 2026-02-15 09:19:39 | 2648 | |||||
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Transgenic Animal Model Core Resource Report Resource Website 1+ mentions |
Transgenic Animal Model Core (RRID:SCR_000776) | TAMC | material resource, biomaterial supply resource | A service for preparing genetically modified mice and rats for investigators at the University of Michigan. These mice models are typically used to study gene function, gene expression, gene regulation, and for the development of animal models of human disease and gene therapy reagents. TAMC provide access to their micromanipoulation and embryos stem cell workstations along with necessary reagents such as specialized plasmids, embryonic stem (ES) cell lines, FBS, and feeder cells certified for ES cell culture. | trangenic, mouse, modify, reagent, cell, toxigene, micromanipulation, embryo, stem, plasmid, culture, transgene, mouse, disease | has parent organization: University of Michigan; Ann Arbor; USA | NIH Intramural Research Program | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-30059 | SCR_000776 | Transgenic Animal Model Core (TAMC) | 2026-02-15 09:17:59 | 4 | ||||||
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Sperm Stem Cell Libraries for Biological Research Resource Report Resource Website |
Sperm Stem Cell Libraries for Biological Research (RRID:SCR_014189) | organism supplier, material resource, biomaterial supply resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on January 18,2023. Stock center of Knockout and Transgenic Rats at UT Southwestern in Dallas. | RIN, Resource Information Network, rat, sperm, knockout, transgenic, organism supplier, RRID Community Authority |
is used by: Integrated Animals is listed by: Resource Information Network has parent organization: University of Texas Southwestern Medical Center; Texas; USA |
NIH 2012 R24 OD ; NIH 2013 R24 OD ; NIH 2014 R24 OD |
THIS RESOURCE IS NO LONGER IN SERVICE | SCR_014189 | 2026-02-15 09:20:39 | 0 | |||||||||
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EGAN: Exploratory Gene Association Networks Resource Report Resource Website 1+ mentions |
EGAN: Exploratory Gene Association Networks (RRID:SCR_008856) | EGAN | software application, data processing software, data analysis software, software resource | Exploratory Gene Association Networks (EGAN) is a software tool that allows a bench biologist to visualize and interpret the results of high-throughput exploratory assays in an interactive hypergraph of genes, relationships (protein-protein interactions, literature co-occurrence, etc.) and meta-data (annotation, signaling pathways, etc.). EGAN provides comprehensive, automated calculation of meta-data coincidence (over-representation, enrichment) for user- and assay-defined gene lists, and provides direct links to web resources and literature (NCBI Entrez Gene, PubMed, KEGG, Gene Ontology, iHOP, Google, etc.). EGAN functions as a module for exploratory investigation of analysis results from multiple high-throughput assay technologies, including but not limited to: * Transcriptomics via expression microarrays or RNA-Seq * Genomics via SNP GWAS or array CGH * Proteomics via MS/MS peptide identifications * Epigenomics via DNA methylation, ChIP-on-Chip or ChIP-Seq * In-silico analysis of sequences or literature EGAN has been built using Cytoscape libraries for graph visualization and layout, and is comparable to DAVID, GSEA, Ingenuity IPA and Ariadne Pathway Studio. There are pre-collated EGAN networks available for human (Homo sapiens), mouse (Mus musculus), rat (Rattus norvegicus), chicken (Gallus gallus), zebrafish (Danio rerio), fruit fly (Drosophila melanogaster), nematode (Caenorhabditis elegans), mouse-ear cress (Arabidopsis thaliana), rice (Oryza sativa) and brewer's yeast (Saccharomyces cerevisiae). There is now an EGAN module available for GenePattern (human-only). Platform: Windows compatible, Mac OS X compatible, Linux compatible | gene, gene association, network, protein-protein interaction, pathway, interaction, annotation, signaling pathway, enrichment, cytoscape, visualization |
is listed by: 3DVC is listed by: Gene Ontology Tools is related to: Gene Ontology is related to: Cytoscape has parent organization: UCSF Helen Diller Family Comprehensive Cancer Center Biostatistics Core |
NCI P30 CA92103 | PMID:19933825 | Free for academic use | nlx_149222 | SCR_008856 | Exploratory Gene Association Networks, Exploratory Gene Association Networks (EGAN) | 2026-02-15 09:19:58 | 8 | |||||
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Retinal Degeneration Rat Model Resource Resource Report Resource Website 10+ mentions |
Retinal Degeneration Rat Model Resource (RRID:SCR_003311) | Retinal Degeneration Rat Model Resource | organism supplier, material resource, biomaterial supply resource | Supplier of fully penetrant rat models of the retinitis pigmentosa type of inherited retinal degeneration, including the following models: * Mutant rhodopsin transgenic rats ** P23H mutant rhodopsin transgenic rats -Three lines with different rates of photoreceptor degeneration ** S334ter mutant rhodopsin transgenic rats -Five lines with different rates of photoreceptor degeneration * RCS (Royal College of Surgeons) rats with inherited retinal dystrophy ** RCS pink-eyed inbred strain ** RCS pigmented congenic strain with slowed rate of retinal dystrophy ** RCS congenic control strains of both pigmentation types, wild-type at the retinal dystrophy (Mertk) genetic locus The resource has been supported by the National Eye Institute (NEI) for the past 19 years to produce and distribute breeding pairs of these animal models to vision scientists. Thus, the following apply: * Request for rats requires only a 1-page letter/e-mail addressing 4 questions * No charge for the animals or tissues (except for shipping costs) * No Material Transfer Agreement (MTA) required * No collaboration requirement (in most cases) The resource usually provides multiple breeding pairs of the rats to vision scientists to generate breeding stock. It can also provide extra animals to breed for immediate experimental work, animals of specific ages (depending upon availability), animals with prior exposure to different lighting conditions, eyes taken at specific ages instead of rats for pilot studies and other experiments (fresh, frozen, dissected in specific ways, or fixed with special fixatives or by different methods), or other tissues (e.g., liver, spleen, brain, testis, etc.) prepared different ways. | mutant rhodopsin transgenic rat, p23h mutant rhodopsin transgenic rat, s334ter mutant rhodopsin transgenic rat, rcs inbred, congenic strain, retinitis pigmentosa, retinal degeneration, retinal dystrophy, vision, rat, eye, transgenic rat, retina, model organism, mutant rat |
is listed by: One Mind Biospecimen Bank Listing has parent organization: UCSF School of Medicine; California; USA |
Retinitis pigmentosa | NIH Blueprint for Neuroscience Research ; NEI |
THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-00188 | SCR_003311 | NEI Retinal Degeneration Rat Model Resource | 2026-02-15 09:18:29 | 23 | |||||
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Comparative Toxicogenomics Database (CTD) Resource Report Resource Website 1000+ mentions |
Comparative Toxicogenomics Database (CTD) (RRID:SCR_006530) | CTD | data analysis service, analysis service resource, database, production service resource, service resource, data or information resource | A public database that enhances understanding of the effects of environmental chemicals on human health. Integrated GO data and a GO browser add functionality to CTD by allowing users to understand biological functions, processes and cellular locations that are the targets of chemical exposures. CTD includes curated data describing cross-species chemical–gene/protein interactions, chemical–disease and gene–disease associations to illuminate molecular mechanisms underlying variable susceptibility and environmentally influenced diseases. These data will also provide insights into complex chemical–gene and protein interaction networks. | environment, chemical, disease, gene, pathway, protein, interaction, animal model, ontology, annotation, toxin, ontology or annotation browser, FASEB list |
is used by: DisGeNET is used by: NIF Data Federation is listed by: 3DVC is listed by: Gene Ontology Tools is related to: PharmGKB Ontology is related to: Gene Ontology is related to: BioRAT is related to: Integrated Gene-Disease Interaction is related to: OMICtools is related to: Integrated Manually Extracted Annotation has parent organization: Mount Desert Island Biological Laboratory has parent organization: North Carolina State University; North Carolina; USA is parent organization of: Interaction Ontology |
Pfizer ; American Chemistry Council ; NIEHS ES014065; NIEHS R01 ES019604; NCRR P20 RR016463; NIEHS U24 ES033155 |
PMID:16902965 PMID:16675512 PMID:14735110 PMID:12760826 |
Free, Freely available | OMICS_01578, nif-0000-02683, r3d100011530 | http://ctd.mdibl.org https://doi.org/10.17616/R3KS7N |
SCR_006530 | CTD - Comparative Toxicogenomics Database | 2026-02-16 09:46:44 | 1188 | ||||
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mAdb Resource Report Resource Website 10+ mentions |
mAdb (RRID:SCR_006677) | mAdb | data analysis service, analysis service resource, data repository, database, storage service resource, production service resource, service resource, data or information resource | Microarray data management and analysis system for NCI / Center for Cancer Research scientists / collaborators. Data is secured and backed up on a regular basis, and investigators can authorize levels of access privileges to their projects, allowing data privacy while still enabling data sharing with collaborators. | microarray, bioinformatics, data management, analysis, gene expression, affymetrix, image, alignment, gene array list, cdna, oligonucleotide, gene discovery, prediction, comparison, cancer, FASEB list | has parent organization: Center for Cancer Research | Center for Information Technology | PMID:14728569 | Account required, Restricted to NIH users/collaborators, The community can contribute to this resource | nif-0000-00171 | http://nciarray.nci.nih.gov/ | SCR_006677 | Mad Bee, microArray database, Micro-array Database at the National Cancer Institute, NCI/CIT microArray database | 2026-02-16 09:46:47 | 38 | ||||
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BrainMaps.org Resource Report Resource Website 50+ mentions |
BrainMaps.org (RRID:SCR_006878) | BrainMaps | image repository, atlas, data repository, storage service resource, service resource, data or information resource | An interactive multiresolution brain atlas that is based on over 20 million megapixels of sub-micron resolution, annotated, scanned images of serial sections of both primate and non-primate brains and integrated with a high-speed database for querying and retrieving data about brain structure and function. Currently featured are complete brain atlas datasets for various species, including Macaca mulatta, Chlorocebus aethiops, Felis catus, Mus musculus, Rattus norvegicus, Tyto alba and many other vertebrates. BrainMaps is currently accepting histochemical, immunocytochemical, and tracer connectivity data, preferably whole-brain. In addition, they are interested in EM, MRI, and DTI data. | aves, brain connection, callicebus moloch, c. auratus, connectivity, monodelphis, o. anatinus, tachyglossidae, brain mapping, virtual microscopy, brain atlas, non-primate, nissl stain, nissl, parvalbumin, smi-32, acetylcholinesterase, luxol fast blue, calbindin, myelin, neuroanatomy, image, brain structure, brain function, database, serial section, brain, tract tracing, coronal, horizontal, sagittal, web service, gene, FASEB list |
is used by: NIF Data Federation is used by: Integrated Datasets is used by: Integrated Nervous System Connectivity is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: University of California at Davis; California; USA |
NIMH 2 P20 MH60975; NIMH R01 MH77556 |
PMID:17229579 | Acknowledgement requested | nif-0000-00093, r3d100012117 | http://www.nitrc.org/projects/brainmaps https://doi.org/10.17616/R3Q64W |
SCR_006878 | BrainMaps: An Interactive Multiresolution Brain Atlas, BrainMaps.org: High Resolution Brain Atlases, BrainMaps | 2026-02-16 09:46:49 | 78 | ||||
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WebGestalt: WEB-based GEne SeT AnaLysis Toolkit Resource Report Resource Website 1000+ mentions |
WebGestalt: WEB-based GEne SeT AnaLysis Toolkit (RRID:SCR_006786) | WebGestalt | web application, data access protocol, software resource, web service | Web based gene set analysis toolkit designed for functional genomic, proteomic, and large-scale genetic studies from which large number of gene lists (e.g. differentially expressed gene sets, co-expressed gene sets etc) are continuously generated. WebGestalt incorporates information from different public resources and provides a way for biologists to make sense out of gene lists. This version of WebGestalt supports eight organisms, including human, mouse, rat, worm, fly, yeast, dog, and zebrafish. | proteomic, gene expression, genome wide association study, statistical analysis, functional genomics, protein protein interaction, pathway, regulatory module, analysis toolkit, web application |
is listed by: Gene Ontology Tools is listed by: OMICtools is related to: Gene Ontology is related to: Entrez Gene is related to: KEGG is related to: Pathway Commons is related to: WikiPathways is related to: PheWAS Catalog is related to: webgestaltr has parent organization: Vanderbilt University; Tennessee; USA |
NIAAA U01 AA016662; NIAAA U01 AA013512; NIDA P01 DA015027; NIMH P50 MH078028; NIMH P50 MH096972; NCI U24 CA159988; NIGMS R01 GM088822 |
PMID:24233776 PMID:15980575 PMID:14975175 |
Free, Freely available | OMICS_02222, nif-0000-30622 | http://bioinfo.vanderbilt.edu/webgestalt/ | SCR_006786 | GOTM, Gene Ontology Tree Machine, WebGestalt2, WEB-based GEne SeT AnaLysis Toolkit, WebGestalt | 2026-02-16 09:46:48 | 2760 | ||||
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MARRVEL Resource Report Resource Website 10+ mentions |
MARRVEL (RRID:SCR_016871) | MARRVEL | data analysis service, analysis service resource, database, production service resource, service resource, data or information resource | Web tool to search multiple public variant databases simultaneously and provide a unified interface to facilitate the search process. Used for integration of human and model organism genetic resources to facilitate functional annotation of the human genome. Used for analysis of human genes and variants by cross-disciplinary integration of records available in public databases to facilitate clinical diagnosis and basic research. | integration, database, model, genetic, resource, functional, annotation, genome, data, analysis, dataset, rare, variant, exploration, bio.tools |
uses: OMIM uses: ClinVar uses: DECIPHER uses: Geno2MP uses: Database of Genomic Variants is used by: Hypothesis Center is listed by: bio.tools is listed by: Debian |
NINDS 1U54NS093793; NIH Office of the Director R24 OD022005; The Robert and Janice McNair Foundation ; Baylor College of Medicine Medical Scientist Training Program ; NINDS U54 NS093793; NIGMS R01 GM067858; NIGMS R01 GM120033; NSF DMS 1263932; CPRIT RP170387; Houston Endowment ; Huffington Foundation ; Belfer Foundation ; T T Chao Family Foundation ; NIGMS R01 GM067761; NIGMS R01 GM084947; NCRR R24 RR032668; NIH Office of the Director R24 OD021997; NCI P30 CA06516; NHGRI U01 HG007709; Simons Foundation |
PMID:28502612 | Free, Public, Freely available | biotools:marrvel | https://bio.tools/marrvel | SCR_016871 | Model organism Aggregated Resources for Rare Variant ExpLoration | 2026-02-16 09:49:06 | 22 | ||||
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miRquant Resource Report Resource Website 1+ mentions |
miRquant (RRID:SCR_017261) | software application, data processing software, data analytics software, data analysis software, software resource | Software tool for accurate annotation and quantification of microRNAs and their isomiRs from small RNA-sequencing data. Provides information on quality of sequencing data, genome mapping statistics, abundance of other types of small RNAs such as tDRs and yDRs, prevalence of post transcriptional modifications. | annotation, quantification, miRNA, smRNA-seq, data, functionally, distinct, isoform, isomiR, quality, sequencing, genome, mapping, statistic, tDR, yDR | PMID:28187421 | Free, Available for download, Freely available | SCR_017261 | miRquant 2.0 | 2026-02-16 09:49:12 | 1 | |||||||||
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Surface-Based Atlases Resource Report Resource Website 1+ mentions |
Surface-Based Atlases (RRID:SCR_002099) | Caret:Atlases | data or information resource, database, atlas | THIS RESOURCE IS NO LONGER IS SERVICE. Documented on July,29,2022. Surface-based atlases of human, macaque, rat and mouse cerebral and cerebellar cortices derived from structural MRI volumes developed in the Van Essen laboratory can be downloaded by direct links on the SumsDB database and can be viewed using freely available Caret (offline) and WebCaret (online) software. The human and macaque atlases include a large and growing compendium of experimental data pertaining to the structural and functional organization of primate cerebral cortex. | atlas, human, macaque, mouse, cerebral cortex, cerebellar cortex, database, primate, magnetic resonance imaging, neuroanatomy |
is listed by: Biositemaps has parent organization: Washington University in St. Louis; Missouri; USA |
PMID:22052704 | THIS RESOURCE IS NO LONGER IS SERVICE. | nif-0000-00346 | SCR_002099 | Surface-Based Atlas | 2026-02-16 09:45:39 | 2 | ||||||
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HomoloGene Resource Report Resource Website 100+ mentions |
HomoloGene (RRID:SCR_002924) | HomoloGene | service resource, data or information resource, database | Automated system for constructing putative homology groups from complete gene sets of wide range of eukaryotic species. Databse that provides system for automatic detection of homologs, including paralogs and orthologs, among annotated genes of sequenced eukaryotic genomes. HomoloGene processing uses proteins from input organisms to compare and sequence homologs, mapping back to corresponding DNA sequences. Reports include homology and phenotype information drawn from Online Mendelian Inheritance in Man, Mouse Genome Informatics, Zebrafish Information Network, Saccharomyces Genome Database and FlyBase. | homolog, paralog, ortholog, genome, gene, protein, protein alignment, phenotype, conserved domain, homology, amino acid sequence, cell, dna, gold standard |
is used by: NIF Data Federation is used by: Nowomics is used by: MitoMiner is listed by: OMICtools is listed by: re3data.org is related to: OMIM is related to: Mouse Genome Informatics (MGI) is related to: Zebrafish Information Network (ZFIN) is related to: SGD is related to: FlyBase is related to: ProbeMatchDB 2.0 is related to: Biomine is related to: Consensus CDS has parent organization: NCBI |
PMID:23193264 | Free, Freely availalbe | nif-0000-02975, r3d100010781, OMICS_01544 | http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=homologene https://doi.org/10.17616/R3889F |
SCR_002924 | NCBI HomoloGene | 2026-02-16 09:45:55 | 437 | |||||
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Schramm Lab Spinal Cord Atlases Resource Report Resource Website |
Schramm Lab Spinal Cord Atlases (RRID:SCR_003265) | Schramm Lab Spinal Cord Atlases | data or information resource, atlas | Serial histological sections of rat spinal cord at the lumbar and thoracic levels. Serial sections of rat spinal cord cut in the horizontal and sagittal planes. Also transverse and sagittal section series of the postnatal thoracic spinal cord immunolabeled for SMI-32. | histological section, lumbar spinal cord, rat, serial tissue section, thoracic spinal cord, spinal cord, lumbar, horizontal, sagittal, postnatal, transverse | has parent organization: Johns Hopkins University; Maryland; USA | Free, Freely available | nif-0000-00021 | SCR_003265 | 2026-02-16 09:46:11 | 0 | ||||||||
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Mammalian Gene Collection Resource Report Resource Website 10+ mentions |
Mammalian Gene Collection (RRID:SCR_007024) | MGC | material resource, biomaterial supply resource, cell repository | NIH initiative project to provide full-length open reading frame (FL-ORF) clones for human, mouse, and rat genes, cow. MGC cDNA clones were obtained by screening of cDNA libraries, by transcript-specific RT-PCR cloning, and by DNA synthesis of cDNA inserts. All MGC sequences are deposited in GenBank and clones can be purchased from distributors of IMAGE consortium. With conclusion of MGC project in March 2009, GenBank records of MGC sequences will be frozen, without further updates. Since definition of what constitutes full-length coding region for some of genes and transcripts for which they have MGC clones will likely change in future, users planning to order MGC clones will need to monitor for these changes. Users can make use of genome browsers and gene-specific databases, such as the UCSC Genome browser, NCBI's Map Viewer, and Entrez Gene, to view relevant regions of genome (browsers) or gene-related information (Entrez Gene). | cell line, cdna, frozen, clone, vector, gene, open reading frame, sequence, expressed sequence tag, bio.tools, FASEB list |
is listed by: One Mind Biospecimen Bank Listing is listed by: bio.tools is listed by: Debian is related to: One Mind Biospecimen Bank Listing is related to: NIDDK Information Network (dkNET) is related to: ATCC is related to: GenBank is related to: Invitrogen Clones is related to: Open Biosystems is related to: Zebrafish Gene Collection has parent organization: National Cancer Institute |
NIH Blueprint for Neuroscience Research | Free, Freely available | biotools:mammalian_gene_collection, nif-0000-00195 | https://bio.tools/mammalian_gene_collection | SCR_007024 | Mammalian Gene Collection | 2026-02-16 09:46:52 | 46 | |||||
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Rat Brain Atlas of Paxinos and Watson Resource Report Resource Website 10+ mentions |
Rat Brain Atlas of Paxinos and Watson (RRID:SCR_006369) | Rat Brain Atlas of Paxinos & Watson | reference atlas, data or information resource, atlas | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 27,2025. Compact 3rd edition of The Rat Brain Atlas of Paxinos & Watson published in 1997, it is the most widely used stereotaxic reference system for rat brain. The illustrations and nomenclature of the atlas have become standard tools used by almost all research neuroscientists who deal with anatomy, physiology, or function. It has been subsequently updated, with the 6th edition being the most recent. The 3rd edition is the most recent one available online for free. The program runs in Adobe Acrobat Reader. | rat, stereotaxic coordinate, brain, neuroanatomy | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_152120 | SCR_006369 | Rat Brain Atlas - Paxinos & Watson, Rat Brain in Stereotaxic Coordinates | 2026-02-16 09:46:42 | 18 | ||||||||
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3D DTI Atlas of the Rat Brain In Postnatal Day 5 14 and Adulthood Resource Report Resource Website 1+ mentions |
3D DTI Atlas of the Rat Brain In Postnatal Day 5 14 and Adulthood (RRID:SCR_009437) | 3D DTI Atlas of the Rat Brain | reference atlas, data or information resource, atlas | 3D DTI anatomical rat brain atlases have been created by the UNC- Chapel Hill Department of Psychiatry and the CAMID research collaboration. There are three age groups, postnatal day 5, postnatal day 14, and postnatal day 72. The subjects were Sprague-Dawley rats that were controls in a study on cocaine abuse and development. The P5 and P14 templates were made from scans of twenty rats each (ten female, ten male); the P72, from six females. The individual cases have been resampled to isotropic resolution, manually skull-stripped, and deformably registered via an unbiased atlas building method to create a template for each age group. Each template was then manually segmented using itk-SNAP software. Each atlas is made up of 3 files, a template image, a segmentation, and a label file. | magnetic resonance, adult rat, newborn rat, infant rat, young rat, sprague dawley, male, female |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: University of North Carolina at Chapel Hill; North Carolina; USA |
Control, Normal | UNC Neurodevelopment Disorders Research Center ; NICHD HD 03110; NINDS R41 NS059095; NIDA IP01DA022446-02 |
nlx_155577 | SCR_009437 | 3-Dimensional Diffusion Tensor Imaging (DTI) Atlas of the Rat Brain In Postnatal Day 5 14 and Adulthood | 2026-02-16 09:47:24 | 2 | ||||||
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One Mind Biospecimen Bank Listing Resource Report Resource Website |
One Mind Biospecimen Bank Listing (RRID:SCR_004193) | One Mind Biobanks, One Mind Biobank | material resource, biomaterial supply resource, cell repository | International registry of biomaterial supply resources both for transplantation and research. Contributions to this resource are welcome. The database is searchable through NIF and is updated regularly. | biorepository, bio-repository, database, registry, biobank, biospecimen, repository |
is used by: NIF Data Federation is used by: Aging Portal lists: Midwest Transplant Network lists: Danish Multiple Sclerosis Biobank lists: Genetics of Kidneys in Diabetes lists: TEDDY lists: BioEden Tooth Cell Bank lists: Windber Tissue Bank lists: Boston University Alzheimer's Disease Center Neuropathology Core Facility lists: UCL Biobank lists: LifeLegacy Foundation lists: CCLG Tissue Bank lists: ADA GENNID Study lists: Ohio State Leukemia Tissue Bank lists: Feinstein Biorepository lists: Iowa Donor Network lists: National Disease Research Interchange lists: Emory ADRC Tissue and Biospecimen Banking Facility lists: Zebrafish Brain Atlas lists: KI Biobank - Amphetamine dependence lists: KI Biobank - PAIN lists: PRACSIS - Prognosis and Risk in Acute Coronary Syndromes In Sweden lists: Africa Centre Biobank lists: UCSF Brain Tumor Tissue Bank lists: Southampton Tumour Bank lists: California National Primate Research Center Analytical and Resource Core lists: CPCTR: Cooperative Prostate Cancer Tissue Resource lists: DIAN - Dominantly Inherited Alzheimer Network lists: ZCre lists: Mexican Health and Aging Study lists: NIDDK Inflammatory Bowel Disease Genetics Consortium lists: Acute Liver Failure Study Group lists: Diabetes Prevention Type 1 lists: NIA Mouse cDNA Project Home Page lists: Type 1 Diabetes Resource lists: BARI 2D lists: Childhood Liver Disease Research and Education Network lists: EuMMCR lists: Living Biobank lists: Nonalcoholic Steatohepatitis Clinical Research Network lists: Drug-Induced Liver Injury Network lists: HALT-C Trial lists: SEARCH for Diabetes in Youth lists: Viral Resistance to Antiviral Therapy of Chronic Hepatitis C lists: GenitoUrinary Development Molecular Anatomy Project lists: Medical Therapy of Prostatic Symptoms lists: Type 1 Diabetes Genetics Consortium lists: Texas A and M Institute for Genomic Medicine lists: Expression Patterns for C. elegans promoter GFP fusions lists: ATCC lists: Genes to Cognition - Biological Resources lists: TCAG lists: World Federation for Culture Collections lists: Italian Rett Syndrome database lists: Addgene lists: Rat Resource and Research Center lists: National Center for Marine Algae and Microbiota lists: UD Chick EST Project lists: NCI Mouse Repository lists: CGSC lists: International Gene Trap Consortium lists: Honey Bee Brain EST Project lists: Marine Biological Laboratory lists: NBRC lists: FANTOM DB lists: UMMC Center for Psychiatric Neuroscience Labs and Facilities lists: Gene Expression Nervous System Atlas lists: Washington National Primate Research Center lists: Primate Embryo Gene Expression Resource lists: Peromyscus Genetic Stock Center lists: Islet Cell Resource Centers lists: National Natural Toxins Research Center lists: GenomEUtwin lists: Drosophila Genomics Resource Center lists: Human Tissue and Organ for Research Resource (HTORR) lists: Special Mouse Strains Resource lists: New England National Primate Research Center lists: Addiction Research GPCR Assay Bank lists: Mutant Mouse Resource and Research Center lists: Penn Induced Pluripotent Stem Cell Core Facility lists: neuromice lists: EUROpean Saccharomyces Cerevisiae ARchive for Functional Analysis lists: ShARM lists: NIH NeuroBioBank lists: NIH Human Pluripotent Stem Cell Registry lists: Phoenix lists: The Cancer Genome Atlas lists: MUGEN Mouse Database lists: Coriell Cell Repositories lists: RIKEN BioResource Center lists: Pleiades Promoter Project: Genomic Resources Advancing Therapies for Brain Disorders lists: Retinal Degeneration Rat Model Resource lists: Harvard Brain Tissue Resource Center lists: Glioma Molecular Dignostic Initiatives lists: Source BioScience LifeSciences lists: National Mesothelioma Virtual Bank lists: SpecimenCentral.com lists: Arizona Cancer Center Tumor Bank lists: Cryogenic Laboratories, Inc lists: Partners HealthCare Biorepository lists: National Neurological AIDS Bank lists: Mount Sinai Allograft Technologies lists: EuroBioBank lists: NICHD Brain and Tissue Bank for Developmental Disorders lists: Roswell Park Data Bank and BioRepository lists: Hungarian Neurological-Psychiatric Biobank lists: Roslin Cells lists: Vitiligo Biobank lists: NAF Ataxia Tissue Donation lists: HipSci lists: Cellartis lists: KaLy-Cell lists: Lions Eye Institute for Transplant and Research lists: Endocells lists: Leibniz Institute for Prevention Research and Epidemiology Biobank lists: DCI Tissue and Blood Procurement Shared Resource lists: Childhood Leukaemia Cell Bank lists: Cleveland Clinic Genomic Medicine Biorepository lists: Sunnybrook Tumour Bank lists: Massachusetts Human Stem Cell Bank lists: Liverpool Tissue Bank lists: Dr. Donald MacLellan Tissue Bank lists: OneLegacy lists: Arizona Biospecimen Locator lists: ProMPT - Prostate Cancer Mechanisms of Progression and Treatment lists: British Columbia Gynaecologic Tissue Bank lists: Guthy-Jackson Repository for Neuromyelitis Optica lists: Biorepository Alliance of Georgia for Oncology lists: ITOR Biorepository Services lists: Canadian Tumour Repository Network lists: Progeria Cell and Tissue Bank lists: Wright Medical Technology, Inc. lists: Accelerated Cure Project MS Repository lists: Integrated Biobank of Luxembourg lists: International Biologics, LLC lists: Canadian Breast Cancer Foundation Tumor Bank lists: AIDS and Cancer Specimen Resource lists: Canadian Virtual Brain Tumour Bank lists: UAB Comprehensive Cancer Center Tissue Procurement Shared Facility lists: Cancer Research Network of the FRSQ lists: Biobanking and Biomolecular Resources Research Infrastructure (BBMRI) lists: Bangalore Brain Bank lists: Roslin Wellcome Trust Tick Cell Biobank lists: Osiris Therapeutics lists: LifePoint, Inc. lists: American Donor Services lists: Life Alaska Donor Services, Inc. lists: Biobank Graz lists: UCSF DNA Bank lists: Store-a-Tooth Stem Cell Bank lists: UC San Diego Biorepository lists: START Tumor Bank lists: Donor Alliance lists: University of Minnesota Tissue Procurement Facility lists: NEALS Sample Repository lists: South Texas Blood and Tissue Center lists: New Life Generation, Inc. lists: Transplant Services Center lists: Nevada Donor Network, Inc. lists: OECI - Tubafrost: The European Human Frozen Tissue Bank lists: Cincinnati Biobank Core Facility lists: OHSU Biolibrary lists: Ochsner Blood Bank lists: Brown University Rhode Island Biobank Core Facility lists: Myeloma Tissue Bank lists: US Biomax lists: LifeShare Transplant lists: BioStorage Technologies lists: Duke Biobank lists: UAB Alzheimer's Disease Center lists: Duke Biospecimen Repository lists: Center for Organ Recovery and Education - CORE lists: ReproTech, Ltd. lists: Ludwig Boltzman Tumour Bank lists: Lifesharing Tissue Services lists: Donor Network of Arizona lists: Wales Cancer Bank lists: M2Gen Biorepository lists: Medical College of Georgia Tumor Bank lists: Cellular Technology Ltd Cryopreserved PBMC lists: onCore UK lists: Doheny Eye and Tissue Transplant Bank lists: Dana Farber Tissue Bank lists: Karolisnka Biobank lists: Rocky Mountain MS Center Tissue Bank lists: Marshfield Clinic Biobank lists: Mantle Cell Lymphoma Cell Bank lists: Neuroendocrine Tumors Biobank lists: Case Comprehensive Cancer Center Biorepository and Tissue Processing Core Facility lists: Maryland Brain Collection lists: Angioma Alliance DNA/Tissue Bank and Patient Registry lists: Wisconsin International Stem Cell Bank lists: Mid-America Transplant Services lists: Autism Genetic Resource Exchange lists: Moffitt Cancer Center Tissue Core lists: PROCURE Quebec Prostate Cancer Biobank lists: AIDS Malignancy Bank lists: University of Chicago Human Tissue Resource Center Biospecimen Banking lists: UAB SPORE Biorepository Banks lists: Bone Bank Allografts lists: Allograft Innovations, LLC lists: Origene China lists: Louisiana Organ Procurement Agency - LOPA lists: EDAR study: biomarkers for Alzheimer's disease lists: Cooperative Human Tissue Network lists: UMass Cancer Center Tissue and Tumor Bank lists: Crimson Biospecimen Core lists: ScienceCare lists: St. James Hospital Cryobiology Laboratory Stem Cell Facility lists: BrainNet Europe lists: Essential Tremor Centralized Brain Repository lists: South Dakota Lions Eye Bank lists: Estonian Genome Center lists: Cureline Biopathology lists: Stem-Health Hellas Stem Cell Bank lists: LifeTek OrthoBiologics lists: TissueNet lists: Swedish Regional Biobank lists: Cryo-Save lists: National Surgical Adjuvant Breast and Bowel Project Tissue Bank lists: University of Virginia Tissue Culture Facility lists: KORA-gen lists: Swiss Biobank lists: NIGMS Human Genetic Cell Repository lists: NINDS Repository lists: eyeGENE lists: NHGRI Sample Repository for Human Genetic Research lists: Biobank of Hospital Clinic - IDIBAPS lists: Regional Biobank of Central Norway lists: SeraCare Lifesciences: Sample Storage Management and Processing Services lists: NEI-AREDS Genetic Repository lists: COHORT Repository lists: JP McCarthy Cord Stem Cell Bank lists: Michigan Neonatal Biobank lists: SepNet Central Sample Bank lists: LifeLink Tissue Bank lists: SPH Biorepository lists: Cardio-Facio-Cutaneous Syndrome International Biobank lists: DCI Donor Services lists: LifeGift Organ Donation Center lists: Inflammatory Breast Cancer Biobank lists: University of Miami Tissue Bank lists: LifeNet Health of Florida lists: UTHealth BioBank lists: Southwest France Tumour Bank lists: Southern Alberta Organ and Tissue Donation Program lists: Blood and Tissue Center of Central Texas lists: MD Anderson Clone Bank lists: Community Tissue Services - CTS lists: Aurora Healthcare Biorepository lists: Human Biological Data Interchange lists: Bio-Options lists: Cancer Center Tissue Bank - Fudan University lists: British Columbia Tumour Tissue Repository lists: BioReliance Biorepository lists: New York Firefighters Skin Bank lists: GSDS - Golden State Donor Services lists: UK Multiple Sclerosis Tissue Bank lists: UCL/UCLH Biobank for Studying Health and Disease lists: Tumorbank Bern lists: IPBIR - Integrated Primate Biomaterials and Information Resource lists: Stanford Tissue Bank lists: HD Community BioRepository lists: Autism Research Resource lists: Yerkes Collection Non-Human Primate Resource lists: Hollings Cancer Center Tissue Biorepository and Research Pathology Services Shared Resource lists: Washington Regional Transplant Community - WRTC lists: Vanderbilt BioVU lists: Jackson Laboratory lists: Central England Haemato-Oncology Research Biobank lists: Genethon DNA and Cell Bank lists: University of Michigan Biorepository lists: Simons Simplex Collection lists: Gift of Life Donor Program lists: Queen Square Brain Bank lists: SeqWright Biorepository lists: Telethon Network of Genetic Biobanks lists: New York Organ Donor Network - NYODN lists: Wistar Institute Collection at Coriell lists: USIDNET DNA and Cell Repository lists: Brain Bank for Autism lists: Living Legacy Foundation of Maryland lists: Beaumont Hospitals Biobank lists: Central Biomaterial Bank - German Heart Failure Network lists: PXE International Registry and BioBank lists: Southeast Tissue Alliance, Inc. - SETA lists: National Biobank of Finland lists: CDC Cell and DNA Repository lists: ILSbio lists: California Cryobank, Inc. lists: ETEX Corporation lists: Leiomyosarcoma Cell and DNA Repository lists: HIV Biobank lists: Human Reference Genetic Material Repository lists: Hema-Quebec lists: LifeSource lists: National Temporal Bone Pathology Resource Registry lists: Blood Borne Pathogens Laboratory lists: Susan G. Komen Tissue Bank lists: Ohio State Biorepository lists: Alabama Organ Center lists: TRACK TBI Network lists: National Stem Cell Bank lists: Bioreclamation lists: Biobanque de Picardie lists: Ontario Tumour Bank lists: UK Stem Cell Bank lists: Fox Chase Biosample Repository Core Facility lists: Loma Linda University Cancer Center Biospecimen Laboratory lists: Barth Syndrome Biorepository lists: Interpore Cross International lists: Human Tissue Resource Network lists: California Transplant Services lists: National Cancer Institute Biorepositories lists: LifeCenter Organ Donor Network lists: HemaCare Corp. lists: Human Brain and Spinal Fluid Resource Center lists: Brain and Body Donation Program lists: Kings College London Infectious Diseases BioBank lists: Conticabase - European Sarcoma Database and Tumour Bank lists: Upstate New York Transplant Services lists: Donor Services of Indiana lists: Minnesota Liver Tissue Cell Distribution System lists: Research Tissue Repository - University of Connecticut lists: Mount Sinai Biobank lists: Rocky Mountain Tissue Bank lists: LifeCenter Northwest lists: International Histocompatibility Cell and DNA Bank lists: Regional Tissue Bank lists: Northwest Tissue Services lists: Washington University Tissue Bank lists: Capital Biosciences lists: Lawson Brain Tumour Tissue Bank lists: Andalusian Regional Tumour Bank lists: Protein Biotechnologies lists: Brainbow mouse resource at Jackson Labs lists: RTI Donor Services lists: University Andrology Laboratory lists: Cancer Control using Population-based Registries and Biobanks lists: UCSD Experimental Neuropath Laboratory lists: BioRep lists: da Vinci European Biobank lists: Wisconsin Tissue Bank lists: Indiana Organ Procurement Organization - IOPO lists: Quebec Leukemia Cell Bank lists: LifeBanc lists: Alzheimer's and Dementia Resource Center lists: Tayside Tissue Bank lists: Biobank Suisse lists: Florida Brain Bank lists: Erasmus MC Tissue Bank lists: Hackensack University Tissue Bank lists: World BioBank lists: University of Zurich SCRM - Cell-and Tissue Biobank lists: Tumorbank Basel Foundation lists: LifeLink Foundation lists: Gift of Hope Organ and Tissue Donor Network lists: St. Gallen Lung Biopsy Biobank lists: UNOS - United Network for Organ Sharing lists: UCSF AIDS Specimen Bank lists: MD Anderson Pancreas Tissue Bank lists: Kentucky Organ Donor Affiliates (KODA) lists: German Biobank Registry lists: Tennessee Donor Services lists: UC Davis Biorepository lists: MD Anderson Gynecologic Cancer Tissue Bank lists: Alamo Tissue Service, Ltd. lists: NeuroBiobank Munich lists: Brain-Net lists: Duke University Kathleen Price Bryan Brain Bank lists: Fairfax Cryobank lists: Lifeline of Ohio lists: University of Pittsburgh Brain Tissue Donation Program lists: Medical University of Vienna Institute of Neurology lists: NMDS - New Mexico Donor Services lists: South Carolina Biorepository System lists: CryoLife, Inc. lists: Tissue Banks International - TBI lists: NDRI Dorsal Root Ganglia Program lists: University of Texas Tumor Bank lists: Zebrafish International Resource Center lists: RLS Foundation Brain Bank lists: Dementia Brain Bank Research Program lists: St. Louis University Alzheimer's Brain Bank lists: Beta Cell Biology Consortium lists: UMKC Neuroscience Brain Tissue Bank and Research Laboratory lists: Parkinsons UK Brain Bank Duplicate lists: Einstein-Montefiore Institute for Clinical and Translational Research Biorepository lists: University of Rochester Program for Brain Tumors and Spinal Tumors lists: Case Western Reserve Tissue Procurement and Histology Core Facility lists: Human Tissue Resource Network lists: Boston University Biospecimen Archive Research Core lists: Adenoma Polyp Tissue Bank lists: Brown Brain Tissue Resource Center lists: Texas A and M Health Science Center MSC Distribution lists: JAX Cre Repository lists: Jackson Laboratory Neurobiology lists: WaNPRC Pathology and Tissue Program lists: Geisinger Biobank lists: KI Biobank lists: KI Biobank - KOL lists: Cell Line Knowledge Base lists: KI Biobank - SCI lists: Janus Serum Bank lists: KI Biobank - GEMS lists: KI Biobank - TBI lists: KI Biobank - EIMS lists: KI Biobank - IMSE lists: Vector Database lists: KI Biobank - BROAD lists: KI Biobank - SBP lists: KI Biobank STAGE-ADHD lists: KI Biobank - STANLEY lists: KI Biobank - STAR lists: KI Biobank - EuroClot lists: KI Biobank - Economical Behavior lists: CATSS - Child and Adolescent Twin Study in Sweden lists: DOGSS lists: UMAS University Hospital - Biobanks of the Department of Clinical Pathology and Cytology lists: KI Biobank - SATSA lists: FaceBase Biorepository lists: KI Biobank - SALTY lists: KI Biobank - STAGE lists: KI Biobank - TwinGene lists: BIOAIR - BIOmarkers in severe Chronic AIRway Disease lists: KI Biobank - NOAK lists: OLIN - Obstructive Lung disease in Northern Sweden lists: Cancer of the Prostate in Sweden (CAPS) lists: KI Biobank - CEFALO lists: ICAP - Integrated analysis of prostate cancer lists: LIBRO-1: Individualized prediction and prevention of breast cancer lists: KI Biobank - PROCAP lists: SCALE - Scandinavian lymphoma etiology lists: SPSAC - Stockholm PSA Cohort lists: KI Biobank - Tissue Biobank lists: KI Biobank - CEFAM lists: KI Biobank - PAROKRANK lists: KI Biobank - Sodertaljehjartan lists: CreZOO lists: European Mouse Mutant Archive lists: Toronto Centre for Phenogenomics lists: CMMR - Canadian Mouse Mutant Repository lists: NHMRC Australian PhenomeBank lists: Australian Phenomics Network lists: International Mouse Phenotyping Consortium (IMPC) lists: ZMP lists: Sanger Mouse Resources Portal lists: Chimpanzee Biomedical Research Resource lists: Owl Monkey Breeding and Research Resource lists: Squirrel Monkey Breeding and Research Resource lists: Human Developmental Biology Resource lists: MouseBook lists: Ambystoma Genetic Stock Center lists: Chordoma Foundation Biobank lists: Biobank Ireland Trust lists: UCSF Brain Tumor Tissue Bank lists: Bloomington Drosophila Stock Center lists: NIDDK Central Repository lists: VA Biorepository Brain Bank lists: University of Florida DNA and Tissue Bank lists: Wake Forest Cynomolgus Breeding Colony lists: CCUG: Culture Collection; University of Goteborg; Sweden lists: Dictyostelium discoideum genome database lists: Cooperative Human Tissue Network Western Division at Vanderbilt University Medical Center lists: NCI Breast and Colon Cancer Family Registries lists: British Columbia Breast Cancer Tumour Bank lists: Wake Forest Vervet Research Colony lists: NIMH Stem Cell Center lists: Musculoskeletal Transplant Foundation - MTF lists: NIMH Repository and Genomics Resources lists: Peginterferon and Ribavirin for Pediatric Patients with Chronic Hepatitis C lists: Collaborative Studies on Genetics of Alcoholism lists: National Swine Resource and Research Center lists: National Center for Research Resources - Primate Resources lists: Confederation of Cancer Banks lists: zfishbook lists: SIU CADRD Dementia Brain Autopsy Program lists: Allograft Resources lists: AASK Clinical Trial and Cohort Study lists: I3-CRB: Interoperable IT Infrastructure for Biological Resources Centres / Biobanks - France lists: Stanford Center for Narcolepsy lists: Xenopus Gene Collection lists: Mammalian Gene Collection lists: Parkinsons UK Brain Bank lists: Zebrafish Gene Collection lists: Stanley Brain Collection lists: Boston Area Community Health Survey lists: Central New York Eye and Tissue Bank lists: Chromosome 7 Annotation Project lists: New York Brain Bank at Columbia University lists: Deltagen and Lexicon Knockout Mice and Phenotypic Data Resource lists: National Cell Repository for Alzheimer's Disease lists: NIA Aged Rodent Colonies lists: Knockout Mouse Project Repository lists: NINDS/UCLA Repository for Parkinson's Disease Mouse Models lists: Aging Cell Repository lists: Mouse Mutagenesis Center for Developmental Defects lists: National NeuroAIDS Tissue Consortium lists: NIA Nonhuman Primate Tissue Bank lists: National Alzheimer's Coordinating Center lists: NIA Mutant Mouse Aging Colony Handbook lists: JAX Mice: Neural Tube Defects lists: Caenorhabditis Genetics Center lists: Tulane Stem Cell Research and Regenerative Medicine Tissue Culture Core lists: NUgene Project lists: JAX Neuroscience Mutagenesis Facility lists: Hyper Cell Line Database lists: CHARTER - CNS HIV Antiretroviral Therapy Effects Research lists: BayGenomics lists: Alzheimer's Disease Cooperative Study lists: Baboon Research Resouces lists: Rhesus Monkey Breeding and Research lists: Mouse Mutant Resource lists: EMD4Biosciences lists: German Gene Trap Consortium lists: STRIDE Virtual Biospecimen Bank lists: Stanford/VA Aging Clinical Research Center lists: Spanish National Tumour Bank Network lists: Bioserve Global BioRepository lists: Saint-Luc Tumour Bank lists: Virgin Health Bank lists: UM Brain Endowment Bank lists: Manitoba Breast Tumor Bank lists: NIMH Brain Tissue Collection lists: UCL-RFH BioBank lists: Coriell Institute Stem Cell Biobank lists: MassGeneral Institute for Neurodegenerative Disease lists: Mayo Clinic Jacksonville: Neuropathology and Microscopy lists: NYU Alzheimer's Disease Center lists: Brain Research Institute Biobank Resources lists: Johns Hopkins Alzheimer's Disease Research Center lists: Rush Alzheimer's Disease Center lists: Massachusetts Alzheimer's Disease Research Center lists: University of Kentucky's Alzheimer's Disease Center lists: Michigan Alzheimer's Disease Center Brain Bank lists: Washington University Knight Alzheimer's Disease Research Center lists: Mount Sinai Alzheimer's Disease Research Center lists: Taub Institute for Research on Alzheimers Disease and the Aging Brain lists: Institute for Basic Research in Developmental Disabilities lists: Vietnam Era Twin Registry Biospecimen Repository lists: Study of Womens Health Across the Nation (SWAN) Repository lists: Dynamics of Health Aging and Body Composition (Health ABC) lists: University of Pennslyvania Brain Bank lists: Layton Center Biomarkers and Genetics lists: MUSC Center on Aging Campbell Neuropathology Laboratory lists: UT Southwestern ADC Brain Tissue Donation Program lists: KI Biobank - Parkinson lists: KI Biobank - EXT lists: GIA Brain Bank Program lists: KI Biobank - ALF lists: KI Biobank - HARMONY lists: Twin Study of Child and Adolescent Development - TCHAD lists: SHEEP - Stockholm Heart Epidemiology Program lists: CreZoo lists: Fleming Database lists: Los Angeles Family and Neighborhood Survey lists: Health and Retirement Study lists: Iowa 65+ Rural Health Study lists: National Long Term Care Survey lists: National Social Life Health and Aging Project (NSHAP) lists: Framingham Heart Study lists: Integrated Cell Lines lists: Chronic Renal Insufficiency Cohort Study lists: PrecisionMed lists: Biopta lists: Manhattan HIV Brain Bank lists: LifeGene lists: Puget Sound Blood Center lists: Fisher BioServices lists: National Psoriasis BioBank lists: StemCure Tissue Banking lists: ProMedDx lists: Biological Resource Centre - National Institute for Cancer Research lists: Coriell Biobank lists: StemSave lists: Dublin Brain Bank lists: Mayo Mitochondrial Disease Biobank lists: Aged Rodent Tissue Bank lists: MVZ Collections lists: CARTaGENE lists: European Collection of Cell Cultures lists: UK DNA Banking Network lists: Biobanc USA lists: Rutgers Cell and DNA Repository lists: Genetic Alliance Biobank lists: Hunt Biobank lists: Advanced Biohealing, Inc. lists: Edinburgh Brain and Tissue Banks lists: JCM lists: Movement Disorders Biobank lists: Surgical Biologics - a MiMedx Group Company lists: Chernobyl Tissue Bank lists: Tissue Solutions lists: Conversant Biologics Inc. lists: Narayana Hrudayalaya Tissue Bank and Stem Cell Research Center lists: AlloSource lists: PathServe lists: UC Davis Alzheimers Disease Center - Resources lists: Asterand lists: RTI Biologics lists: Mayo Clinic Biobank lists: Lifelines Biobank lists: Mayo Validation Support Services Biobank lists: LifeNet Health lists: Medical Biobank lists: Fraunhofer Institute for Biomedical Engineering lists: BWH Specimen Bank lists: University of Minnesota Bionet - Academic Health Center lists: DF/HCC DNA Resource Core lists: Indiana Alzheimer Disease Center lists: UK Biobank lists: National Institute on Drug Abuse Center for Genetic Studies lists: Oregon Brain Bank lists: Biologic Specimen and Data Repository Information Coordinating Center (BioLINCC) lists: Northwestern CNADC Tissue Bank / Neuropathology Core lists: Loyola University Medical Center / Hines VA Brain Bank lists: Trinity Biobank lists: SAPALDIA lists: Ohio U Diabetes Endocrine Biorepository lists: National Cell Culture Center lists: Diabetic Complications Consortium lists: Xenbase lists: Blueprint Epigenome lists: EBiSC lists: Biospecimens/Biorepositories: Rare Disease-HUB (RD-HUB) lists: Parkinson's Progression Markers Initiative lists: OriGene lists: University of Nottingham NASC Nottingham Arabidopsis Stock Centre is related to: Rat Resource and Research Center is related to: Honey Bee Brain EST Project is related to: Islet Cell Resource Centers is related to: Special Mouse Strains Resource is related to: NIH Human Pluripotent Stem Cell Registry is related to: Harvard Brain Tissue Resource Center is related to: Louisiana Organ Procurement Agency - LOPA is related to: Washington Regional Transplant Community - WRTC is related to: Minnesota Liver Tissue Cell Distribution System is related to: Zebrafish International Resource Center is related to: Bloomington Drosophila Stock Center is related to: National Swine Resource and Research Center is related to: Xenopus Gene Collection is related to: Mammalian Gene Collection is related to: Zebrafish Gene Collection is related to: Mouse Mutagenesis Center for Developmental Defects is related to: NIA Mutant Mouse Aging Colony Handbook is related to: Manhattan HIV Brain Bank is related to: National Institute on Drug Abuse Center for Genetic Studies is related to: International Mouse Strain Resource is related to: Jackson Laboratory is related to: Rat Genome Database (RGD) is related to: VISTA Enhancer Browser is related to: GenitoUrinary Development Molecular Anatomy Project is related to: Coriell Cell Repositories is related to: NICHD Brain and Tissue Bank for Developmental Disorders is related to: Human Brain and Spinal Fluid Resource Center is related to: UM Brain Endowment Bank has parent organization: One Mind for Research has parent organization: Neuroscience Information Framework |
The community can contribute to this resource, Data are licensed by their respective owners, Use and distribution is subject to the Terms of Use by the original resource | nlx_143622 | https://neuinfo.org/mynif/search.php?q=*&cf=Biospecimen&t=indexable&nif=nlx_143622-1 http://neuinfo.org/onemind/index.php?q=*&b=0&r=20 | SCR_004193 | One Mind: One Voice Bio-repository Cosmic Landscape, One Mind Biospecimen Banks | 2026-02-16 09:46:17 | 0 | ||||||
|
NEIBank Resource Report Resource Website 10+ mentions |
NEIBank (RRID:SCR_007294) | NEIBank | data analysis service, analysis service resource, database, production service resource, service resource, data or information resource | An integrated resource for genomics and bioinformatics in vision research including expressed sequence tag (EST) data and sequence-verified cDNA clones for multiple eye tissues of several species, web-based access to human eye-specific SAGE data through EyeSAGE, and comprehensive, annotated databases of known human eye disease genes and candidate disease gene loci. All expression- and disease-related data are integrated in EyeBrowse, an eye-centric genome browser. NEIBank provides a comprehensive overview of current knowledge of the transcriptional repertoires of eye tissues and their relation to pathology. The data can be interrogated in several ways. Specific gene names can be entered into the search window. Alternatively, regions of the genome can be displayed. For example, entering two STS markers separated by a semicolon (e.g. RH18061;RH80175) allows the display of the entire chromosomal region associated with the mapping of a specific disease locus. ESTs for each tissue can then be displayed to help in the selection of candidate genes. In addition, sequences can be entered into a BLAST search and rapidly aligned on the genome, again showing eye derived ESTs for the same region. To see the same region at the full UCSC site, cut and paste the location from the position window of the genome browser. EyeBrowse includes a custom track display SAGE data for human eye tissues derived from the EyeSAGE project. The track shows the normalized sum of SAGE tag counts from all published eye-related SAGE datasets centered on the position of each identifiable Unigene cluster. This indicates relative activity of each gene locus in eye. Clicking on the vertical count bar for a particular location will bring up a display listing gene details and linking to specific SAGE counts for each eye SAGE library and comparisons with normalized sums for neural and non-neural tissues. To view or alter settings for the EyeSAGE track on EyeBrowse, click on the vertical gray bar at the left of the display. Other custom tracks display known eye disease genes and mapped intervals for candidate loci for retinal disease, cataract, myopia and cornea disease. These link back to further information at NEIBank. | ear, taste, genetics, cdna, chicken, ciliary body, cornea, fovea, dog, guinea pig, human, iris, lacrimal gland, lens, mouse, ocular surface system, optic nerve, rabbit, rat, retina, rpe, choroid, sequence data, trabecular meshwork, whole eye, zebrafish, library, vision, eye, gene, library, disease, loci, ocular genomics, cdna library, expressed sequence tag, blast, cataract, cornea, glaucoma, myopia, retinal disease, genomics, eye tracking device | has parent organization: National Eye Institute (NEI) Commons | Eye disease, Cataract, Glaucoma, Myopia, Retinal disease | NIH Blueprint for Neuroscience Research ; NEI R01 EY13315; NEI R01 EY11286; NEI P30EY0054722 |
PMID:18648525 | nif-0000-00097 | SCR_007294 | NEI Bank | 2026-02-16 09:46:56 | 15 |
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