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URL: https://github.com/GreenleafLab/chromVAR
Proper Citation: chromvar (RRID:SCR_026570)
Description: Software R package for analyzing sparse chromatin-accessibility data by estimating gain or loss of accessibility within peaks sharing the same motif or annotation while controlling for technical biases. Enables accurate clustering of scATAC-seq profiles and characterization of known and de novo sequence motifs associated with variation in chromatin accessibility. Used for analysis of sparse chromatin accessibility data from single cell or bulk ATAC or DNAse-seq data.
Synonyms: chromatin Variability Across Regions
Resource Type: data processing software, data analysis software, source code, software toolkit, software application, software resource
Defining Citation: PMID:28825706
Keywords: analyzing sparse chromatin-accessibility data, analysis of sparse chromatin accessibility data, single cell, bulk ATAC, DNAse-seq data,
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