Curator Dashboard

Software framework for analyzing low-depth next-generation sequencing data in heterogeneous/structured populations using principal component analysis.

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• RRID
• 9 months ago - by Anonymous

Software tool to estimate pairwise relatedness from ancient DNA, taking in account contamination, ROH, ascertainment bias. Used to identify identity-by-descent fragments and to estimate degree of relatedness from ancient DNA data.

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• 9 months ago - by Anonymous

Ancient DNA genetic relatedness estimation software relying on pedigree simulations. Used to compute estimate of relatedness from randomly sampled pseudo-haploidized variant calls, and leverages high-definition pedigree simulations to bypass the use of cohort of individuals.

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• 9 months ago - by Anonymous

Software sequence simulator for ancient DNA. For ancient hominin samples can also simulate various levels of present-day human contamination and microbial contamination.

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• 9 months ago - by Anonymous

Software for Kinship coefficient estimation from low coverage ancient (or degraded forensic) genome data. Used to infer relatedness up to the 4th degree from low-coverage ancient human genomes.

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• 9 months ago - by Anonymous

Software package provides Bayesian shrinkage estimators for effect sizes for variety of GLM models, using approximation of posterior for individual coefficients.

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• 9 months ago - submitted by Dongjun Han

Software R package to generate Venn diagram.'ggplot2' implement of Venn Diagram.

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• 9 months ago - submitted by Dongjun Han

Software package that provides client interface to Kyoto Encyclopedia of Genes and Genomes (KEGG) REST API. Client-side REST access to KEGG.

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• 9 months ago - submitted by Dongjun Han

Ubuntu terminal environment on Windows with Windows Subsystem for Linux (WSL). Used to streamline web application development, leverage cutting-edge AI/ML tooling, develop cross-platform applications and manage IT infrastructure without leaving Windows.

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• 9 months ago - submitted by Dongjun Han

Windows Subsystem for Linux (WSL) is feature of Windows operating system that enables to run Linux file system, along with Linux command-line tools and GUI apps, directly on Windows, alongside traditional Windows desktop and apps. Tool for developers, especially web developers, those working on open source projects, or deploying to Linux server environments.

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• 9 months ago - submitted by Dongjun Han

NIDA-IRP Histology and Imaging Core serves NIDA-IRP researchers by providing access to existing and emerging neuroanatomical technologies to map and characterize neuronal circuits. Provides expertiese, consultations and training to NIDA-IRP researchers in the adaptation and execution of neuroanatomical techniques and procedures.

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• SciCrunch
• 9 months ago - submitted by Edyta Vieth

Biomolecular Research Core Facility (BRCF) has collection of instrumentation for characterization of biomolecules and their role in variety of processes. Instrumentation is accessible to internal and external customers. Available instrumentation focuses on mass spec, histology, imaging, and protein biochemistry.

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• SciCrunch
• 9 months ago - submitted by Edyta Vieth

Core provides equipment and infrastructure required to conduct advanced genomics research. Provides access to DNA sequencing, traditional Sanger sequencing and genotyping, and additional equipment services for functional genomic assays and mapping. Provides robotics and instrumentation to facilitate the handling of large numbers of samples, as well as many advanced sequencing and sequencing support applications.

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• SciCrunch
• 9 months ago - submitted by Edyta Vieth

NIDA IRP Confocal and Electron Microscopy Core serves NIDA-IRP researchers by providing access to confocal and electron microscopic technologies to characterize cellular and ultrastructural properties of organelles, tissue culture and brain tissue. Provides expertise, consultations and training in adaptation and execution of confocal and electron microscopic techniques and procedures.

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• SciCrunch
• 9 months ago - submitted by Edyta Vieth

Software application for accurate and rapid prediction of IAV subtypes and host source.

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• 9 months ago - submitted by Hoang-Hai Nguyen

Electronic von Frey system for rodents. Used for touch sensitivity in unrestrained animals. The scientist gradually increases the force applied to the animal paw, until the peak detector scores the animal paw withdrawal (or the user scores it manually with the included pedal).

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• 9 months ago - submitted by Amirah Wright

Cogentech's CGT lab is offering its diagnostic services for Hereditary Tumors (Cancer Risk) and for Personalized Medicine (Therapy) to clinicians, laboratories and hospitals.

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• SciCrunch
• 9 months ago - submitted by Edyta Vieth

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 8th,2025. Cogentech's DNA Sanger Sequencing (DSS) Core Facility offers standard DNA sequencing and assistance for projects using on Sanger sequencing. We also offer the possibility to use fragment analysis for various applications, providing assistance in the pre-and post-analytical phase. The laboratory is ISO9001 certified.

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• SciCrunch
• 9 months ago - submitted by Edyta Vieth

Cogentech's Integrated Genomics Core Facility (IGU) consists of units: Molecular Biology and Sequencing, Histopathology and Bioinformatics. Molecular Biology group provides expertise in various fields of application: nucleic acid extraction from different matrices, ddPCR and various types of sequencing (customised gene panels, Lowpass WGS, WES, WGS, total RNA-Seq, mRNA Seq, TCR-Seq, 16S Metagenomic Seq, ATAC-Seq, genome-wide methylation profiling). Bioinformatics unit provides pipelines for analysis of data produced by all sequencing workflows. In addition, it provides its expertise for implementation and development of customised pipelines. Histopathology unit offers services for slide preparation and staining, image digitisation and laser-capture microdissection. The laboratory is ISO9001 certified.

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• SciCrunch
• 9 months ago - submitted by Edyta Vieth

Cogentech's Proteomics and Metabolomics Core Facility provides infrastructure for identification, characterization and quantification of proteins, metabolites and lipids.Offers several instrumental platforms for separation of those molecules. Proteomics, metabolomics and lipidomics analysis rely on mass spectrometry coupled with liquid chromatography.

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• SciCrunch
• 9 months ago - submitted by Edyta Vieth