Curator Dashboard

Software supervised learning framework for chromatin loop detection in genome-wide contact maps.

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• 1 week ago - submitted by Edyta Vieth

Standardized, open-source framework of classes and properties designed to annotate and interlink data regarding metabolites, species taxonomy, ecological traits, and environmental interactions. It powers the METRIN-KG knowledge graph, mapping the chemical diversity of Earth's species to support biodiversity conservation. Knowledge representation schema designed to capture, contextualize, and structure chemical diversity data across all known species. It reuses and harmonizes several existing ontologies, while introducing over 100 new concepts and relations to enable interoperability and data reuse.

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• 1 week ago - submitted by Disha Tandon

Software pipeline for generating knowledge graph integrating emi, trydb, globi datasets. Code for constructing a knowledge graph that integrates enriched metabolite data from Experimental Natural Products Knowledge Graph (ENPKG), LOTUS (available through Wikidata), plant trait data from TRY, and biotic interaction data from Global Biotic Interactions (GloBI). It performs taxonomic alignment against Wikidata records and generates Resource Description Framework (RDF) triples representing taxonomic relationships, traits, and species interactions. The resulting knowledge graph is queryable via a SPARQL (SPARQL Protocol and RDF Query Language) endpoint.

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• 1 week ago - submitted by Disha Tandon

Knowledge base platform that provides scientists worldwide with tools for searching, exploring, and visualizing Neuroscience knowledge represented by knowledge graphs (KGs). Provides tools that enable scientists to contribute new information (or knowledge) to the platform and is expected to be a go-to destination for all neuroscience-related research needs. Allows making predictions and new inferences in addition to querying and viewing information.

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• 1 week ago - submitted by Anita Bandrowski

Mouse Biology Shared Resource (MBSR) provides knockout, transgenic, and humanized murine cancer models and related services for advancing translational cancer research. Additionally, the MBSR offers services to enhance the use of existing mouse models or to facilitate the development of new mouse models for cancer research, including genetic alteration (e.g., CRISPR/Cas9-mediated gene targeting, transgenesis), surgical manipulation (e.g., patient-derived xenografts (PDX), cell-derived allografts (CDA) and xenografts (CDX)), and environmental challenges (e.g., diet, chemotherapeutic agents). can produce a wide range of allele-speci?c mouse models and offers innovative technologies to phenotype mouse models that mimic human conditions.

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• SciCrunch
• 1 week ago - submitted by Edyta Vieth

Molecular Pharmacology and Chemical Biology Shared Resource (MPCBSR) provides services for the assessment of new therapeutics, including clinical trial specimens and determination of clinical PK/PD and potential drug-drug interactions (DDI), pharmacological studies on novel therapeutics in preclinical models, including DM/PK/PD, on-target mechanisms, biomarkers, and combination effects, and chemical synthesis of new compounds and drug delivery nanomaterials for improved therapy.

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• SciCrunch
• 1 week ago - submitted by Edyta Vieth

Software R package from the Allen Institute designed to build, standardize, and analyze single-cell RNA-seq-based cell type taxonomies. It utilizes a structured Allen Institute schema (AIT) to organize cell annotations and metadata, enabling hierarchical, data-driven cell type classification

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• 1 week ago - submitted by Carol Thompson

General, open-standard schema for cell annotations and related metadata. Provides programmatically accessible standard designed to record additional metadata about individual cell type annotations, including marker genes used as evidence and details of automated annotation transfer. Standard is represented as JSON schema as this allows all metadata to be gathered in a single, compact validatable file - which includes a link to a cell by gene matrix file of annotated data. However, the schema is designed so that it can be decomposed into individual tables suitable for use in dataframes/TSVs and flattened onto obs in AnnData format.

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• 1 week ago - submitted by Edyta Vieth

Mass Spectrometry Core provides comprehensive LC-MS and MALDI imaging MS based analytical support for proteomics, lipidomics, metabolomics, glycomics, and spatial omics. Offers expertise in experimental design, optimized sample preparation, data acquisition, data analysis, and investigator training for NIH funded and translational research projects.

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• 2 weeks ago - submitted by Kazuhiro Aoki

Fluorescence stereomicroscope offers 3D image, larger panoramic field of view, more intense fluorescence, and longer working distances. Living objects can be observed spatially in large fields of view.

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• 2 weeks ago - by Anonymous

Software R package for estimating dim-light melatonin onset (DLMO), implementing the hockey-stick method. Establishes a reproducible and sustainable foundation for melatonin-based circadian phase estimation and a modular platform for incorporating future quantitative approaches to DLMO detection.

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• 2 weeks ago - by Anonymous

Web-based, and open-source platform designed to predict and optimize CRISPR-Cas13 guide RNAs (gRNAs) for targeting and knocking down specific RNA molecules. It is specifically used to select the most efficient guide RNAs for RfxCas13d to maximize RNA degradation (knockdown) efficacy, with applications in transcriptome engineering, functional genomics, and antiviral therapy.

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• 2 weeks ago - by Anonymous

Bioinformatics software program for multi-omics data analysis and visualization. It is developed and maintained by Qlucore AB (Lund, Sweden). Delivers flexible and easy-to-use visualization of big data for fast analysis and results.

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• 2 weeks ago - by Anonymous

Core has personnel with expertise in all aspects of Mass Spectrometry Imaging. Provides spatial mapping of biomolecules from tissue sections using Matrix Assisted Laser Desorption/Ionization (MALDI) and Secondary Ion Mass Spectrometry (SIMS).

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• 2 weeks ago - by Anonymous

Core provides cell analysis, sorting instruments and expertise in regular fluorescence, spectral, and flow cytometry. Offers educational and cytometric services including stem cell analysis, immunophenotyping, cell cycle analysis, translocation and co-localisation of cell activation markers, chromatin density, and apoptotic and necrotic analyses. Performs cell sorting, expertise in experimental design and provides equipment training for all users.

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• 2 weeks ago - submitted by Richard Grenfell

Ultra-rapid, high-throughput, high insight system for multiplex immunofluorescence (IF) and biomarker discovery. System enables to perform highly-multiplexed imaging of entire cross sections with sub-cellular resolution. Fully automated workflows for tissue staining and imaging. A full-stack hyperplexing solution capable of visualizing up to 40 markers.

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• 2 weeks ago - submitted by Sungnam Cho

Automated, microwave-based instrument designed to perform rapid deparaffinization, rehydration, and antigen/nucleic acid retrieval on formalin-fixed, paraffin-embedded (FFPE) tissue sections. It handles up to 96 slides in 30 minutes, utilizing infrared (IR) technology for consistent, high-throughput staining.

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• 2 weeks ago - submitted by Sungnam Cho

Core lab aids researchers in the design, compliance, methods, extractions, data analyses and training in microbiome research and innovation. Premier resource center, equipped with instrumentation, analytical capabilities, and training opportunities in microbiome.

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• 2 weeks ago - by Anonymous

This dataset includes human brain stimulated-echo (STE) diffusion MRI (dMRI) images acquired at the long diffusion time of 1 second from 10 healthy volunteers and an ex vivo brain hemisphere, as described by Aganj et al (MRM 2026). Also included are MPRAGE T1 images for all scans and standard dMRI images for the 10 in vivo scans. All images have been anonymized, and the T1 images have been de-faced.

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• NIF
• 2 weeks ago - submitted by Iman Aganj

Field Research Site is a core facility providing scientists with advanced field research infrastructure and crop management capabilities. Offers diverse agricultural practices including full tillage, no-till systems, irrigation, precision spraying, and plot planting for row crops and specialty crops. On-site resources include multiple drying rooms, walk-in freezers, and dedicated processing spaces for soil, tissue, and seed samples.

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• 2 weeks ago - submitted by Marisa Yoder