Curator Dashboard

Software R package for Bounded Memory Linear and Generalized Linear Models. Regression for data too large to fit in memory.

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• SciCrunch
• 3 months ago - by Anonymous

Software R package uses inverse probability weighting methods to estimate treatment effect under marginal structure model for the cause-specific hazard of competing risk events. Estimates also the cumulative incidence function (i.e. risk) of the potential outcomes, and provides inference on risk difference and risk ratio.

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• RRID
• 3 months ago - by Anonymous

Software R package for analysis of multivariate dichotomous and polytomous data using latent trait models under the Item Response Theory approach.

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• RRID
• 3 months ago - by Anonymous

Software R package for latent variable analysis. Used to estimate variety of multivariate statistical models. Fit a variety of latent variable models, including confirmatory factor analysis, structural equation modeling and latent growth curve models.

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• RRID
• 3 months ago - by Anonymous

Software package for the R Environment. Used for estimating multidimensional item response theory parameters for exploratory and confirmatory models by using maximum-likelihood meth- ods.

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• RRID
• 3 months ago - by Anonymous

Free 3D/4D Microscopy Image Viewer. Used to visualize microscopy images (stacks) in 3D.

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• 3 months ago - submitted by Ana Dorrego-Rivas

Software tool as frequency-aware prompt-guided network for nuclear segmentation and classification in immunohistochemistry images.

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• 3 months ago - submitted by Lulu Qin

Provides advanced computing systems and services including supercomputer applications, AI and machine learning, big data analysis and storage. Offers suite of cyberinfrastructure coordination services targeted at supporting all areas of science and engineering research and education.

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• 3 months ago - submitted by John-Paul Navarro

Software Python package for automated detection, morphology classification, tracking, and colocalization analysis of organelles in multichannel fluorescence microscopy data.

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• 3 months ago - by Anonymous

Benchtop plate reader with ResoVu software enables rapid, label-free detection in disposable 96-well plate format. Benchtop system with semi-automated fluidics with Disposable 96-well microarray plate format; User friendly, and easy to operate; Real-time data analysis features.

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• 3 months ago - by Anonymous

Software algorithm for restitching overlapping image crops with intensity adjustment. Crops are intensity corrected and weight adjusted to produce uniform intensity composite image.

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• 3 months ago - submitted by Nasreen Buhn

Core offers proteomics and metabolomics services. Provides support from experimental design to execution, sample processing, data interpretation, and assistance with presentations, manuscript preparation for publication and deposition of data in public repository and data storage on local server. Provides service analysis of post-translational modifications, such as phosphorylation, ubiquitination, acetylation, and others, with precise site localization on either single protein or for entire proteome.Uses Orbitrap Fusion Lumos coupled to Easy-nLC 1200 HPLC system. Facility instruments are operated with various acquisition methods, including classic Data Dependent Analysis (DDA) or more recent Data Independent Analysis (DIA). Acquired data from different methods are used to accurately identify and measure abundance of proteins and peptides employing different quantitation strategies: Label-free, TMT, pulsed-SILAC and Isotope-labelled Iodoacetamide (for Cysteine oxidation).Provides specialized data analysis software like MaxQuant and Mascot for DDA, Spectronaut for DIA of clinical samples and Perseus and Scaffold for data compilation, analysis, and dissemination.

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• SciCrunch
• 3 months ago - submitted by Edyta Vieth

Core offers comprehensive protein expression, purification, characterization, and structural biology services, including advanced methods such as Cryo-Electron Microscopy (Cryo-EM) and X-ray Crystallography.

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• SciCrunch
• 3 months ago - submitted by Edyta Vieth

Software integrative pipeline for antimicrobial resistance genes, virulence factors, toxins, and biosynthetic gene clusters prediction in metagenomes. Used for predicting microbiome-based pathogenicity and resistance to better understand and address challenges posed by antimicrobial resistance and infectious diseases.

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• 3 months ago - submitted by Luis Fernando Delgado

Cryo-Electron Microscopy Core facility at ISM offers EM services with state-of art instruments (Vitrobot for sample preparation, Glacios-2 TEM for imaging biological samples at atomic resolution). We offer single particle analysis (SPA) workflow, imaging drug delivery products (ex: liposomes, LNPs, AAVs..)

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• SciCrunch
• 3 months ago - submitted by Edyta Vieth

Integrative database for human proteome structural and functional sites. Used for understanding role of specific residues in protein structures, complexes, and interaction networks. Integrates various structural and functional annotation layers for each residue, offering comprehensive understanding of protein functionality.

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• 3 months ago - by Anonymous

Software R package for most bulk sequencing datasets. Creates shiny app for interactive data analysis and visualisation. Used for analysing and sharing bulk sequencing results.

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• 3 months ago - by Anonymous

Web application for data visualization and data mining system that offers efficient analysis and discovery by integrating big data with intelligent and intuitive functionality.

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• 3 months ago - by Anonymous

Software tool for comprehensive T‐Cell subsets abundance prediction and its application in cancer immunotherapy.

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• 3 months ago - by Anonymous

Core provides complete flow cytometry analysis and cell sorting services in terms of experimental design, instrumentation, training, technical assistance and scientific guidance from sample preparation to publication.

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• 3 months ago - by Anonymous