Curator Dashboard

Web server for interactive and collaborative online docking to assist small compound molecular docking. In silico assessment of protein receptor interactions with small ligands.

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• RRID
• 3 months ago - by Anonymous

Semi-manually curated database for biologically relevant ligand-protein binding interactions. Structure data are collected primarily from Protein Data Bank (PDB), with biological insights mined from literature and other specific databases. Database used for serving needs of ligand-protein docking, virtual ligand screening and protein function annotation.BioLiP2 offers significantly greater coverage of nucleic acid-protein interactions, and interactions involving large complexes, integrates structural alignment algorithms with structure prediction techniques, which enables composite protein structure and sequence-based searching.

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• 3 months ago - by Anonymous

Web application for protein-ligand binding site prediction. Starting from given structure of target proteins, COACH will generate complementray ligand binding site predictions using two comparative methods, TM-SITE and S-SITE, which recognize ligand-binding templates from the BioLiP protein function database by binding-specific substructure and sequence profile comparisons.

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• 3 months ago - by Anonymous

Web application for ligand binding site prediction. Used for prediction of ligand binding sites from protein structure.

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• 3 months ago - by Anonymous

Hub for clinical, genetic and functional datasets of preclinical cancer models.Provides details of cell model relationships, patient and clinical information, as well as access to associated genetic and functional datasets. Passports database contains curated details and standardized annotation for cell models, including cancer organoid cultures. Users can navigate database via tissue, cancer-type, genetic feature and data availability to select model. REST-API provides programmatic data access and exploration.

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• 3 months ago - by Anonymous

Software tool to read level DNA methylation analysis of bisulfite converted sequencing data.

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• 3 months ago - by Anonymous

Core provides high memory parallel processing environments and software in support of the university research, academic, and cybersecurity missions. HPC clusters use multiple computers to process data in parallel, greatly reducing the time to solution for most computational science tasks. They also provide storage to manage very large data sets.

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• SciCrunch
• 3 months ago - submitted by Edyta Vieth

Federally funded facility committed to advancing scientific research by delivering high-quality proteomic data. Provides proteomics analysis, technology, services, and rigorous quality standards.

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• SciCrunch
• 3 months ago - submitted by Edyta Vieth

Software tool to control Illumina HiSeq 2500 System. Open source Python code base and flow cell design that converts Illumina HiSeq 2500 instrument, comprising epifluorescence microscope with integrated fluidics, into open platform for programmable applications without need for specialized engineering or software development expertise.Enables non-specialists to develop and implement fluidics coupled imaging methods in benchtop system.

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• 3 months ago - submitted by Daniel Domovic

INECOL focuses on research on natural resources, conservation, and biodiversity, aiming to solve ecological problems and generate scientific knowledge.

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• 3 months ago - submitted by Edyta Vieth

Core supports research in various scientific disciplines through advanced microscopy techniques (fluorescence, electron, and optical) and micro-CT. Provides technical services, consultation and training in advanced microscopy.

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• 3 months ago - by Anonymous

Core provides iPSC cell culture laboratory with access to curated and validated iPSC lines for neurodegeneration research. Provides robotic and fully automated high-content imaging system to perform high-throughput screening on living brain cells (iPSC derived through reprogramming) to understand the mechanisms behind neurodegeneration at the molecular level.

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• 3 months ago - submitted by Erin Williams

Facility offers services, combining expert guidance and technologies including Sanger Sequencing, Next-Generation Sequencing, Single-Cell Sequencing, qPCR, Quantity and Quality of DNA and RNA measurement.

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• 3 months ago - by Anonymous

Facility for characterization and expression level quantitation of proteins (isolated or in an extract) and small molecules/metabolites by mass spectrometry (MS) and/or chromatography. Services include protein identification, labeled and label-free comparative proteomics by Orbitrap mass spectometry, protein/small molecule quantification using targeted mass spectometry (PRM and SRM/MRM mass spectometry), high throughput protein immune-protein assays (384-well Luminex/ELISA assay), etc.

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• 3 months ago - submitted by Wenbo Zhi

Core dedicated to providing cutting-edge magnetic resonance imaging services for human participants. Provides Human 3 Tesla MRI system from Siemens for human research with proper IRB approval and approved MRI protocols.

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• 3 months ago - by Anonymous

Commercial vendor and service provider of laboratory reagents and antibodies located in Beijing, China. Supplier of scientific instrumentation, reagents and consumables, and software services.

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• 3 months ago - by Anonymous

Software R package provides collection of reference expression datasets with curated cell type labels, for use in procedures like curated cell type labels or deconvolution of bulk RNA-seq.

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• 3 months ago - by Anonymous

Software R package enables arbitrary ontologies to be read into R, supports representation of ontological objects by native R types, and provides a parsimonius set of performant functions for querying ontologies.

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• SciCrunch
• 3 months ago - by Anonymous

Software R package in Bioconductor that communicates with Cytoscape via its REST API, providing access to the full feature set of Cytoscape from within the R programming environment. RCy3 has been redesigned to streamline its usage and future development as part of a broader Cytoscape Automation effort.Network biology using Cytoscape from within R.

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• SciCrunch
• 3 months ago - by Anonymous

Software tool for plotting Receiver Operating Characteristic (ROC) curves.

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• SciCrunch
• 3 months ago - by Anonymous