Curator Dashboard

A fully automatic array image analysis software which can process single or multiple array images. Koadarray automatically finds the spot locations within each image and quantifies the spot intensity data. It can be used in conjunction with radioactive applications, macroarray applications, fluorescent microarray image analysis and fluorescent microplate images.

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• SciCrunch
• 13 years ago - by Anonymous

Software R package to test association between methylation at CpG sites across genome and phenotype of interest, adjusting for any relevant covariates. Can perform standard analyses of large datasets without need to manually input data. Can handle mixed effects models with chip or batch entering model as random intercept. Includes tools to apply quality control filters, perform permutation tests, and create QQ plots, manhattan plots, and scatterplots for individual CpG sites.

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• SciCrunch
• 13 years ago - by Anonymous

A software tool for annotating biomedical investigations and the resulting data, then producing a MAGE-TAB file. This software is a standalone desktop which features: an editor function, an annotation modifier, incorporation of terms from biomedical ontologies, standard templates for common experiment types, a design aid to help create a new document, and a validator that checks for syntactic and semantic violations.

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• SciCrunch
• 13 years ago - by Anonymous

A data analysis pipeline for the Methyl-MAPS method.

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• SciCrunch
• 13 years ago - by Anonymous

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on August 31, 2022. Software for pre-processing, quality assessment, read distribution and methylation estimation for MeDIP-sequence datasets. It has the ability to quickly analyze sequence data for DNA methylation. This software integrates customized scripting and existing utilities tools that work on both paired end and single end data.

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• SciCrunch
• 13 years ago - by Anonymous

A software used for the validation of pre-miRNAs predictions as well as predict the final structure of mature miRNA.

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• SciCrunch
• 13 years ago - by Anonymous

An open source graphic viewer. Some features include batch conversion, paint options, basic editing and several supported file formats. It is compatible with Windows 9x, ME, NT, 2000, XP, 2003 , 2008, Vista, Windows 7, Windows 8, and Windows 10.

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• SciCrunch
• 12 years ago - by Anonymous

Commercial antibody vendor that provides products that utilize in-vitro cloning technology to create rabbit clonal and monospecific clonal antibodies. This company produces antibodies which correspond strictly to the conserved linear epitope of the antigen molecule.

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• SciCrunch
• 12 years ago - by Anonymous

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 31,2025. An anatomy ontology covering the vertebrate skeletal system that integrates terms for skeletal cells, tissues, biological processes, organs (skeletal elements such as bones and cartilages), and subdivisions of the skeletal system.

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• SciCrunch
• 12 years ago - by Anonymous

Open source software that integrates various forms of microarray data from diverse annotation and primary data sources. This software provides a programmatic framework (API set) that will be used for collaborative development and deploys an easy to maintain client-server architecture.

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• SciCrunch
• 13 years ago - by Anonymous

An ontology for standardized, systematic description of effects, consequences and mechanisms of variations.

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• SciCrunch
• 12 years ago - by Anonymous

Ontology for representing events, time, and their relationships.

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• SciCrunch
• 12 years ago - by Anonymous

An ontology for DICOM as used in the SeDI project.

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• SciCrunch
• 12 years ago - by Anonymous

Ontology for Inventories of Clinical Data Research Networks, Patient-Powered Research Networks, and Patient Registries

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• SciCrunch
• 12 years ago - by Anonymous

A collection of both commercial and noncommercial software products which includes: Mascot Distiller, Mascot Parser, and Mascot Server. Mascot Distiller is commercial and provides a single interface to process raw data into de-isotoped peak lists. This tool can also be used for the easy distribution of search and quantitative results to colleagues. The non-commercial Mascot Parser software provides an API (Application Programmer Interface) that makes it easier to access search results written in C++, Java, Python and Perl. Mascot Server is non-commercial, and is a collection of peptide mass fingerprints as well as a MS/MS database. A selection of popular sequence databases are available online and include SwissProt, NCBInr, and the EST divisions of EMBL. This server is best used for evaluating and searching for smaller data sets.

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• SciCrunch
• 12 years ago - by Anonymous

A commercial graphing software company that offers scientific software for statistical analyses, curve fitting and data analysis. It offers four programs: Prism, InStat, StatMate and QuickCalcs.

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• SciCrunch
• 12 years ago - by Anonymous

A user-sponsored molecular visualization software system on an open-source foundation. The software has the capabilities to view, render, animate, export, present and develop three dimensional molecular structures.

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• SciCrunch
• 12 years ago - by Anonymous

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on August 30,2023. Informatics core for the purpose of promoting clinical research by collecting data from the Penn Health System.

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• SciCrunch
• 13 years ago - by Anonymous

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 31,2025. Software which converts DICOM images to NIfTI format.

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• SciCrunch
• 13 years ago - by Anonymous

A developer tool to provide batch processing capability for pipelines. Users input data into a input table and run analysis with it. It is used to power CamBA and Brainwaver User interfaces.

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• SciCrunch
• 13 years ago - by Anonymous