Curator Dashboard

Software R package for estimating average telomere length (TL) for paired end, whole genome sequencing (WGS) sample.Telomere computational analysis tool.

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• RRID
• 2 months ago - submitted by Richard Culliford

Software tool as Python script to remove bias from Isaac aligned data by clipping all reads for variant positions by 5 bases and producing a modified vcf file.

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• 2 months ago - submitted by Richard Culliford

Software Python library for creating comutation plots to visualize genomic and phenotypic information. Used for visualizing genomic and phenotypic information via comutation plots.

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• 2 months ago - submitted by Richard Culliford

Software Python package used to compute mutational signatures.

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• 2 months ago - submitted by Richard Culliford

Software R package to visualize mapped reads along with annotation as track layers for NGS dataset such as ChIP-seq, RNA-seq, miRNA-seq, DNA-seq, SNPs and methylation data.

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• 2 months ago - submitted by Richard Culliford

Software R package to calculate T cell fractions from WES data from hg19 or hg38 aligned genomes.

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• 2 months ago - submitted by Richard Culliford

Software R package providing classes, methods and test data based on maximum likelihood and Bayesian inference.

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• 2 months ago - submitted by Richard Culliford

Software R package for identifying peaks in data related to genomics, genetics, or epigenetics research.

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• 2 months ago - submitted by Richard Culliford

Software R package to time somatic mutations relative to clonal and subclonal copy number states and calculate relative timing of copy number gains.

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• 2 months ago - submitted by Richard Culliford

Software R package containing the full genomic sequences for Homo sapiens as provided by UCSC (genome hg38, based on assembly GRCh38.p14 since 2023/01/31).

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• 2 months ago - submitted by Richard Culliford

Software R package for discovery of cancer driver genes and non-coding elements in whole genome sequencing data. Cancer driver discovery tool for analysis of somatic mutations derived from whole genome sequencing.

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• 2 months ago - submitted by Richard Culliford

Software R package for analysing multiple omics datasets in the context of molecular pathways, biological processes and other types of gene sets.Method that first prioritises genes through multi-omics data fusion and then identifies enriched pathways with gene-level evidence from input datasets.

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• 2 months ago - submitted by Richard Culliford

Software tool to identify transposable element insertions from paired-end Illumina reads, barcode linked-reads, long reads (PacBio or Nanopore), or hybrid data from different sequencing platforms and takes whole-exome sequencing (WES) or whole-genome sequencing (WGS) data as input.

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• 2 months ago - submitted by Richard Culliford

Software tool to annotate high-impact five prime UTR variants either creating new upstream ORFs or disrupting existing upstream ORFs. Annotates variants in 5'untranslated regions (5'UTR) that create or disrupt upstream open reading frames.

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• 2 months ago - submitted by Richard Culliford

Software tool to detect linear enrichment of somatic mutations in user-defined regions of interest.

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• 2 months ago - submitted by Richard Culliford

Software application as PCAWG6 workflow to merge SVs from Sanger (BRASS), Broad Inst (DRanger and SnowMan ) and EMBL/DKFZ (DELLY).

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• 2 months ago - submitted by Richard Culliford

Software tool that estimates accumulated functional impact bias of somatic mutations in any genomic region of interest based on local simulation of the mutational process affecting it.

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• 2 months ago - submitted by Richard Culliford

Software application to detect significant clustering signals across genomic regions. Sequence-based clustering method to identify cancer drivers.

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• 2 months ago - submitted by Richard Culliford

Software tool designed to detect rare cancer driver genes from aggregated whole-exome sequencing data.

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• 2 months ago - submitted by Richard Culliford

Software tool for detecting microsatellite instability by next-generation sequencing.

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• 2 months ago - submitted by Richard Culliford