Curator Dashboard

Core Facility is a 3,000+ fish tank facility, located in the Slosberg-Landay building, equipped with 48 racks which hold standard sized adult zebrafish tanks, three-rack nursery space for larval fish, and quarantine space containing two stand-alone housing systems. Wild-type lines are maintained inhouse for shared use. Wet lab space is available for breeding and line maintenance; core staff and facility-associated technicians perform daily feeding. The core includes a dedicated procedure room for embryo manipulation.

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• SciCrunch
• 2 months ago - submitted by Edyta Vieth

Core offers services including statistical analyses, grant applications, prep for manuscript publications, etc.

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• RRID
• 2 months ago - by Anonymous

Bruker ELEXSYS-E580 pulse X-/Q-band instrument offers state-of-the-art capabilities for both standard and cutting-edge EPR spectroscopy across a broad range of sample types and experimental needs. High-performance Electron Paramagnetic Resonance (EPR) spectrometer used for advanced research in chemistry, materials science, biochemistry, and physics, enabling studies of paramagnetic molecules, protein structures, quantum states, and materials by combining X-band (9-10 GHz) and Q-band (34 GHz) frequencies for high-resolution, sensitive pulse techniques.

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• RRID
• 2 months ago - by Anonymous

Software package provides different SHapley Additive exPlanations (SHAP) algorithms for calculating SHAP values, including Kernel SHAP. Used for explaining predictions made by complex machine learning models.

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• RRID
• 2 months ago - by Anonymous

Software 3D Slicer plugin for Liver Anatomy Annotation by R-Vessel-X.

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• RRID
• 2 months ago - by Anonymous

Software R package for latent class analysis, short time Fourier transform, fuzzy clustering, support vector machines, shortest path computation, bagged clustering, naive Bayes classifier, generalized k-nearest neighbour.

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• RRID
• 2 months ago - by Anonymous

Software tool for optimizing likelihood conditioning on high point estimate of local genetic correlation and assesses statistical evidence that the two traits not only exhibit correlated genetic effects but are likely influenced by shared causal variants.Enhances specificity and interpretability in detecting colocalized signals. This targeted framework improves causal inference in pleiotropic architectures, supporting more informed discovery of biomarkers and therapeutic targets.

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• RRID
• 2 months ago - submitted by Yuying Li

Database showing regions (hg38) detected as putative genomic duplications. url does not work letter sent

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• RRID
• 2 months ago - submitted by Richard Culliford

Text-mined and routinely updated database of drivers, oncogenes and tumor suppressors in different types of cancer.

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• RRID
• 2 months ago - submitted by Richard Culliford

Software R package for estimating average telomere length (TL) for paired end, whole genome sequencing (WGS) sample.Telomere computational analysis tool.

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• RRID
• 2 months ago - submitted by Richard Culliford

Software tool as Python script to remove bias from Isaac aligned data by clipping all reads for variant positions by 5 bases and producing a modified vcf file.

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• RRID
• 2 months ago - submitted by Richard Culliford

Software Python library for creating comutation plots to visualize genomic and phenotypic information. Used for visualizing genomic and phenotypic information via comutation plots.

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• RRID
• 2 months ago - submitted by Richard Culliford

Software Python package used to compute mutational signatures.

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• RRID
• 2 months ago - submitted by Richard Culliford

Software R package to visualize mapped reads along with annotation as track layers for NGS dataset such as ChIP-seq, RNA-seq, miRNA-seq, DNA-seq, SNPs and methylation data.

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• RRID
• 2 months ago - submitted by Richard Culliford

Software R package to calculate T cell fractions from WES data from hg19 or hg38 aligned genomes.

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• RRID
• 2 months ago - submitted by Richard Culliford

Software R package providing classes, methods and test data based on maximum likelihood and Bayesian inference.

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• RRID
• 2 months ago - submitted by Richard Culliford

Software R package for identifying peaks in data related to genomics, genetics, or epigenetics research.

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• RRID
• 2 months ago - submitted by Richard Culliford

Software R package to time somatic mutations relative to clonal and subclonal copy number states and calculate relative timing of copy number gains.

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• RRID
• 2 months ago - submitted by Richard Culliford

Software R package containing the full genomic sequences for Homo sapiens as provided by UCSC (genome hg38, based on assembly GRCh38.p14 since 2023/01/31).

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• RRID
• 2 months ago - submitted by Richard Culliford

Software R package for discovery of cancer driver genes and non-coding elements in whole genome sequencing data. Cancer driver discovery tool for analysis of somatic mutations derived from whole genome sequencing.

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• RRID
• 2 months ago - submitted by Richard Culliford