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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.

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Resource Name Proper Citation Abbreviations Resource Type Description Keywords Resource Relationships Related Condition Funding Defining Citation Availability Website Status Alternate IDs Alternate URLs Old URLs Parent Organization Resource ID Synonyms Record Last Update Mentions Count
Leica DMRE Fluorescence Microscope
 
Resource Report
Resource Website
1+ mentions
Leica DMRE Fluorescence Microscope (RRID:SCR_000011) Leica DMRE microscope instrument resource THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 31,2025. Microscope that enables bright field and fluorescence imaging options. microscope, fluorescence, imaging, hardware, instrument, equipment, USEDit has parent organization: Leica Microsystems THIS RESOURCE IS NO LONGER IN SERVICE SciRes_000155 SCR_000011 Fluorescence Leica DMRE microscope 2026-02-14 01:59:35 9
Chemical Methods Ontology
 
Resource Report
Resource Website
1+ mentions
Chemical Methods Ontology (RRID:SCR_003286) CHMO, RSC CMO data or information resource, ontology, controlled vocabulary An ontology that describes methods used to collect data in chemical experiments, such as mass spectrometry and electron microscopy; preparing and separating material for further analysis, such as sample ionization, chromatography, and electrophoresis; and synthesizing materials, such as epitaxy and continuous vapor deposition. It also describes the instruments used in these experiments, such as mass spectrometers and chromatography columns. It is intended to be complementary to the Ontology for Biomedical Investigations (OBI). obo, chemistry, analytical chemistry, physical chemistry, material chemistry, method, health, mass spectrometry, electron microscopy, chemical experiment, sample ionization, chromatography, electrophoresis, instrument is listed by: BioPortal
is listed by: OBO
is listed by: Google Code
is listed by: Ontobee
is related to: Information Artifact Ontology
is related to: Ontology for Biomedical Investigations
has parent organization: Royal Society of Chemistry
Free, Available for download, Freely available nlx_157363 http://purl.bioontology.org/ontology/CHMO
http://purl.obolibrary.org/obo/chmo.owl
http://www.ontobee.org/browser/index.php?o=CHMO
https://code.google.com/p/rsc-cmo/ SCR_003286 RSC Chemical Methods Ontology 2026-02-14 02:00:44 1
Leica TCS SPE
 
Resource Report
Resource Website
10+ mentions
Leica TCS SPE (RRID:SCR_002140) TCS SPE instrument resource High resolution, compact and robust confocal that enables immunohistochemical colocalization analysis of florescent markers. Leica TCS SPE confocal point-scanning, spectral system for fluorescence imaging of live or fixed cells. confocal microscope, imaging, instrument, equipment, hardware has parent organization: Leica Microsystems Restricted SciRes_000154 http://www.leica-microsystems.com/fileadmin/downloads/Leica%20TCS%20SPE/Brochures/Leica%20TCS%20SPE-Brochure_EN.pdf SCR_002140 Leica TCS SPE confocal microscope 2026-02-14 02:00:22 32
BD LSR II Flow Cytometer
 
Resource Report
Resource Website
10+ mentions
BD LSR II Flow Cytometer (RRID:SCR_002159) LSR II Flow Cytometer instrument resource Benchtop high-performance cell sorter with multiple lazer, detector and fluoroscrome options. Allows detection of 12 parameters (10 color conjugates, forward and sideward scatter). flow cytometer, instrument, equipment, hardware has parent organization: BD Biosciences THIS RESOURCE IS NO LONGER IN SERVICE Model_Number_BD LSR II, SciRes_000152 https://fccf.sitehost.iu.edu/pdf/BDLSRIIUserGuide.pdf http://www.rockefeller.edu/fcrc/pdf/BD_LSRII_Brochure_SJ-0142-00.pdf SCR_002159 2026-02-14 02:00:19 35
COGNISION
 
Resource Report
Resource Website
1+ mentions
COGNISION (RRID:SCR_002362) COGNISION software resource A portable, highly integrated, internet-enabled, hardware / software platform and patient management system, which includes an online Patient Manager module which complies with the HIPAA Final Security Rule, an event-related potential (ERP) Viewer module to view and analyze raw and average ERP waves, and a Protocol Editor module to simplify the choice and administration of selected ERP protocols. It is also easy to train and administer with non-specialized personnel, and is designed to be used in an out-patient setting. COGNISION TM with auditory or visual event-related potential (ERP) technology, provides a direct physiologic measure of patients' cognitive processing (i.e., a cognitive biomarker). eeg, eeg, meg, electrocorticography, event-related potentials, hardware, physiological recording, instrument, equipment is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) Commercial License nlx_155724 http://www.nitrc.org/projects/neuronetrix SCR_002362 COGNISION (TM) System 2026-02-14 02:00:23 2
OEI fMRI compatible olfactometer
 
Resource Report
Resource Website
1+ mentions
OEI fMRI compatible olfactometer (RRID:SCR_002507) OEI fMRI compatible olfactometer instrument resource A computerized, odor delivery device that can be used for basic research applications including mapping olfactory centers, cognitive / learning research, neuro-marketing among other uses. Additional products including tests for odor threshold, odor identification, odor discrimination and odor memory. experiment control, hardware, magnetic resonance, stimulus presentation, odor, olfactory, instrument, equipment is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) Commercial License nlx_155907 http://www.nitrc.org/projects/oei
http://www.osmicenterprises.com/docs/OsmicFMRIOlfactomterManual%207-1-13.pdf
SCR_002507 2026-02-14 02:00:26 4
Sirius Analytical
 
Resource Report
Resource Website
Sirius Analytical (RRID:SCR_003945) Sirius commercial organization Organization that designs and manufactures analytical instrumentation to measure physicochemical parameters for the pharmaceutical and biotech industry, as well as offers physicochemical data and consultancy services. Their instruments provide accurate and reliable values for pKa, log P, log D, solubility and dissolution, particle size and shape analysis. These critical physicochemical parameters are important in drug formulation, and also influence the ability of New Chemical Entities to cross biological membranes such as the gastro-intestinal tract, blood-brain barrier, skin and cell walls. Sirius also offers an analytical service for high quality PhysChem outsourcing, used by hundreds of clients worldwide. measurement, instrument, chemical analysis, physicochemical, drug, small molecule, biotherapeutics, surface imaging, size, shape, drug development is related to: ORBITO nlx_158338 http://www.sirius-analytical.com/ SCR_003945 Sirius - The Science of Measurement, Sirius Analytical Instruments Ltd., Sirius Analytical Ltd 2026-02-14 02:00:34 0
Model 1025 MR-compatible Small Animal Monitoring and Gating System
 
Resource Report
Resource Website
1+ mentions
Model 1025 MR-compatible Small Animal Monitoring and Gating System (RRID:SCR_002090) Model 1025 Monitoring & Gating System instrument resource Magnetic resonance compatible monitoring and gating system, including software, that enables monitoring rectal temperature, electrocardiogram and respiration rate during magnetic resonance imaging scan time. The PC displays multiple waveforms, measured values, trends and gating pulses. The data Acquisition modules are controlled by menu driven software from the PC. Data acquisition modules are available to measure the following parameters: ECG, respiration (three ways), temperature (two ways), pressure including invasive blood pressure (two ways), oxygen saturation and end-tidal CO2. hardware, instrument, equipment, physiology, monitoring, gating, mr environment, respiration, temperature, blood pressure, oxygen saturation, end-tidal co2, magnetic resonance, electrocardiogram, magnetic resonance imaging, software resource Free, Freely available SciRes_000157 https://wikihost.uib.no/mriwiki/images/4/4c/SAInstruments_1025.pdf http://www.i4sa.com/web_app/main/defaultProduct.aspx?ID=82&PT=3 SCR_002090 Model 1025 Monitoring and Gating System, MR-Compatible Model 1025 Monitoring and Gating System, Small Animal Monitoring and Gating System 2026-02-14 02:00:22 3
Fiber Optic Button Response System
 
Resource Report
Resource Website
10+ mentions
Fiber Optic Button Response System (RRID:SCR_009577) instrument resource Instrument that accurately gathers participant responses and verifies signals. The Celeritas Series response units are assembled using high-impact, chemical resistant, medical grade plastic. The response units include a tactile indicator to ensure correct finger placement during experiments and comfortably attach to the participant?s wrists. The units communicate button presses through fiber optic cabling which connects to a Fiber Optic Interface Console located in the control room through an available wave guide. The interface console provides real-time feedback of participant responses via LED indicators and includes a set of switches which can be used to make responses for the participant as needed. eeg, meg, electrocorticography, experiment control, hardware, magnetic resonance, response monitoring, instrument, equipment is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) nlx_155759 http://www.nitrc.org/projects/fobrs
https://pstnet.com/wp-content/uploads/2021/04/Celeritas-Operator-Manual.pdf
SCR_009577 Celeritas Fiber Optic Response System 2026-02-14 02:01:52 22
Lumina LP- 400 Response System
 
Resource Report
Resource Website
Lumina LP- 400 Response System (RRID:SCR_009596) Lumina LP-400 instrument resource A reliable patient response system designed specifically for use in an fMRI. Lumina was developed to satisfy the requirements of both the clinical and research fields. experiment control, hardware, magnetic resonance, response monitoring, fmri, clinical, research, instrument, equipment is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) nlx_155789 http://www.nitrc.org/projects/lumina http://www.cedrus.com/ordering/mri/usa.htm SCR_009596 Lumina fMRI Input Device, Lumina LP-400 System for fMRI, Lumina fMRI Response Pad 2026-02-14 02:01:52 0
Brainsight
 
Resource Report
Resource Website
50+ mentions
Brainsight (RRID:SCR_009539) Brainsight software resource, resource Neuronavigation system for use in human cognitive neuroscience (TMS, EEG, NIRS) and for non-human neurosurgical applications. dicom, eeg, eeg, meg, electrocorticography, hardware, minc, minc2, magnetic resonance, nifti, nirs/fnir, optical imaging, optical imaging, philips par/rec, physiological recording, rendering, surface rendering, visualization, instrument, equipment is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) Comercial Licence nlx_155718 http://www.nitrc.org/projects/brainsight SCR_009539 2026-02-14 02:01:51 62
G protein receptor interaction feature finding instrument
 
Resource Report
Resource Website
10+ mentions
G protein receptor interaction feature finding instrument (RRID:SCR_008343) production service resource, service resource, analysis service resource, resource Griffin (G-protein-receptor interacting feature finding instrument) is a high-throughput system to predict GPCR - G-protein coupling selectively with the input of GPCR sequence and ligand molecular weight. This system consists of two parts: 1) HMM section using family specific multiple alignment of GPCRs, 2) SVM section using physico-chemical feature vectors in GPCR sequence. G-protein coupled receptors (GPCR), which is composed of seven transmembrane helices, play a role as interface of signal transduction. The external stimulation for GPCR, induce the coupling with G-protein (Gi/o, Gq/11, Gs, G12/13) followed by different kinds of signal transduction to inner cell. About half of distributed drugs are intending to control this GPCR - G-protein binding system, and therefore this system is important research target for the development of effective drug. For this purpose, it is necessary to monitor, effectively and comprehensively, of the activation of G-protein by identifying ligand combined with GPCR. Since, at present, it is difficult to construct such biochemical experiment system, if the answers for experimental results can be prepared beforehand by using bioinformatics techniques, large progress is brought to G-protein related drug design. Previous works for predicting GPCR-G protein coupling selectivity are using sequence pattern search, statistical models, and HMM representations showed high sensitivity of predictions. However, there are still no works that can predict with both high sensitivity and specificity. In this work we extracted comprehensively the physico-chemical parameters of each part of ligand, GPCR and G-protein, and choose the parameters which have strong correlation with the coupling selectivity of G-protein. These parameters were put as a feature vector, used for GPCR classification based on SVM. drug, alignment, biochemical, bioinformatic, coupling, gpcr, g-protein, helix, instrument, interface, ligand, molecular, pattern, physico-chemical, receptor interacting, sequence, signal transduction, stimulation, svm, system, technique, transmembrane, weight, instrument, equipment, hardware, bio.tools is listed by: bio.tools
is listed by: Debian
has parent organization: Computational Biology Research Center Core Facility
National Institute of Advanced Industrial Science and Technology nif-0000-25210, biotools:griffin https://bio.tools/griffin SCR_008343 Griffin 2026-02-14 02:01:37 19
Limelight
 
Resource Report
Resource Website
10+ mentions
Limelight (RRID:SCR_014254) data processing software, data acquisition software, resource, data analysis software, time-series analysis software, software application, software resource A video tracking system designed for high-throughput behavioral experiments. LimeLight can track up to 4 arenas at once and can collect images at up to 30 frames per second for one animal or up to 8 frames per second when tracking 4 arenas at once. The tracking system has 2 different hardware configurations: the 1-camera system can be used to record 1 to 4 animals at once, while for multiple animals, each one is placed in a separate arena in one quadrant of the image. The software contains productivity features such as flexible arena setup, user-defined behavior scoring, stimulus control, and various analytical functions for quantifying behavior. The program is designed for experiments such as Open Field, Plus Maze, Radial Arm Maze, Zero Maze, Novel Object Recognition, Conditioned Place Preference, and Barnes Maze. data acquisition software, time series analysis software, data analysis software, video tracking system, behavioral experiment, high throughput, hardware, instrument, equipment is related to: FreezeFrame Account required SCR_014254 2026-02-14 02:02:54 15
Nikon Eclipse FN1 Microscope
 
Resource Report
Resource Website
1+ mentions
Nikon Eclipse FN1 Microscope (RRID:SCR_014995) instrument resource Fixed-stage microscope for electrophysiological research. Features include open design, noise reduction, 16x objective lens, and water dipping objective with depth induced aberration correction. microscope, electrophysiology, fixed-stage, nikon, hardware, instrument, equipment, USEDit is listed by: USEDit Commercially available, Available for purchase https://downloads.microscope.healthcare.nikon.com/phase4/literature/Brochures/Fn1-2CE-MRQH-8.pdf SCR_014995 Eclipse FN1 2026-02-14 02:02:47 7
2200 TapeStation Instrument
 
Resource Report
Resource Website
10+ mentions
2200 TapeStation Instrument (RRID:SCR_014994) instrument resource Hardware system which automates RNA, DNA, and protein sample QC, including sample loading, separation, and imaging. rna, dna, protein sample qc, quality control, agilent, hardware, instrument, equipment, USEDit https://www.agilent.com/cs/library/usermanuals/public/G2964-90000_TapeStation_USR_ENU.pdf http://www.genomics.agilent.com/en/TapeStation-System/2200-TapeStation-Instrument/?cid=AG-PT-181&tabId=AG-PR-1004 SCR_014994 Agilent 2200 TapeStation, Agilent 2200 TapeStation system 2026-02-14 02:03:00 17
Glo-Max Multi Detection System
 
Resource Report
Resource Website
1+ mentions
Glo-Max Multi Detection System (RRID:SCR_015575) resource THIS RESOURCE IS NO LONGER IN SERVICE, documented August 6, 2017. Detection instrument that gathers absorbance, fluorescence, and luminescence data., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. detection instrument, absorbance machine, fluorescence machine, luminescence machine, hardware, instrument, equipment THIS RESOURCE IS NO LONGER IN SERVICE SCR_015575 Glo Max Multi Detection System, GloMax Multi Detection System 2026-02-14 02:02:51 9
IITC Life Sciences Rotarod Test
 
Resource Report
Resource Website
1+ mentions
IITC Life Sciences Rotarod Test (RRID:SCR_015698) instrument resource Kit for assessing motor function and endurance in mice and rats. IITC’s Rotarod Test is capable of having up to five mice or rats tested at a time standard. motor function, endurance, mouse, rat, drug resistance, material resource, hardware, instrument, equipment, USEDit is listed by: USEDit
is related to: ANY-maze
Commercially available https://www.iitcinc.com/pdf/Rotarod.pdf SCR_015698 IITC Rotarod Test, IITC Rotarod Treadmill, Rotarod Treadmill for mice and rats, IITC's Rotarod Test, Rotarod Test Rats and Mice, IITC Life Sciences Rotarod Treadmill 2026-02-14 02:03:04 4
Neuroconn DC-Stimulator Plus
 
Resource Report
Resource Website
1+ mentions
Neuroconn DC-Stimulator Plus (RRID:SCR_015520) tDCS instrument resource Device for administering transcranial electrical stimulation. It has applications in cranial electrotherapy that provides a weak direct current for non-invasive Interventional Neurophysiology. commercial resource, material resource, hardware, transcranial electrical stimulation, cranial electrotherapy, tES, instrument, equipment, USEDit PMID:26889687 Commercially available, Available for purchase https://info.neurocaregroup.com/hubfs/neuroCare_May_2021/pdf/pb_dcsp_en.pdf SCR_015520 2026-02-14 02:03:06 7
DTI FiberTrak MR Clinical application
 
Resource Report
Resource Website
DTI FiberTrak MR Clinical application (RRID:SCR_015521) data processing software, resource, data analysis software, software application, software resource, image analysis software Instrument and software tool used to visualize, trace, analyze, and process white matter fiber tracts of Diffusion Tensor Imaging (DTI) data in real-time. It supports pre-operative surgical planning, post-surgery evaluation, and general evaluation of fiber tracts around tumors and lesions in connection with functional areas. white matter fiber tract, dti analysis, diffusion tensor imaging analysis, surgical preparation, surgical evaluation, hardware, instrument, equipment Commercially available SCR_015521 Philips DTI FiberTrak, DTI FiberTrak 2026-02-14 02:02:49 0
Neuroscan SynAmps RT 64-channel Amplifier
 
Resource Report
Resource Website
1+ mentions
Neuroscan SynAmps RT 64-channel Amplifier (RRID:SCR_015818) resource Equipment that is an EEG signal amplifier for 64-channel montages. It is suitable for recording data from high sampling rate (20,000 Hz) Auditory Brain Stem recordings and Spike Spindles to true DC recordings of CNV and P300. eeg, signal amplifier, signal amplification, 64 channel, neuroimaging, hardware, instrument, equipment Commercially available, Available for purchase SCR_015818 2026-02-14 02:02:54 6

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