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Resource Name Proper Citation Abbreviations Resource Type Description Keywords Resource Relationships Related Condition Funding Defining Citation Availability Website Status Alternate IDs Alternate URLs Old URLs Parent Organization Resource ID Synonyms Record Last Update Mentions Count
New Iberia Research Center
 
Resource Report
Resource Website
10+ mentions
New Iberia Research Center (RRID:SCR_008279) biomaterial supply resource, organism supplier, material resource NIRC maintains and provides available research facilities accredited by the Association for Assessment and Accreditation of Laboratory Animal Care (AAALAC) International; a ready source of chimpanzees of mixed ages and sex for use in biomedical and behavioral sciences, and also provides professional staff necessary to support investigators with their research needs. Current Research: Vaccine development and testing; pharmacokinetic, pharmacodynamic, preclinical safety, and efficacy studies. Services Provided: The University of Louisiana at Lafayette-New Iberia Research Center (UL Lafayette-NIRC) is an AAALAC-International-accredited nonhuman primate research facility dedicated to the support of basic and applied biomedical and behavioral research. All proposed programs must be approved by the presenting institution and the UL Lafayette-NIRC animal care and use committees. State-of-the-art biomedical support facilities are available that include access to ultrasound, radiography with automatic processor and computer imagery for diagnostic enhancement, and endoscopy and laparoscopy with video monitors, camera and color photo imagery. Diagnostic Laboratory: A 12,000-square-foot laboratory is available for investigators'' research support requirements. Capabilities within the laboratory include but are not limited to hematology, chemistry, microbiology, urinalysis, parasitology, and histology. Among the investigator support procedures are Ficoll gradient isolation of peripheral blood mononuclear cells, platelet aggregation profiles, nonhuman primate lymphocyte proliferation assay, and flow cytometry (lymphocyte enumeration). Emergency generator power is accessible in each laboratory unit and for all major instrumentation and critical freezers. Animals: The center cares for approximately 360 chimpanzees and 5,500 New and Old World species of nonhuman primates. In addition to chimpanzees, the following species of nonhuman primates are being bred at the center: Vervet monkey (Chlorocebus aethiops), cynomolgus macaque (Macaca fascicularis), pigtailed macaque (M. nemestrina), rhesus macaque (M. mulatta). endoscopy, animal, assay, behavioral, biomedical, blood, cell, chemistry, chimpanzee, chlorocebus aethiops, cynomolgus, cytometry, development, hematology, histology, imagery, laboratory, laparoscopy, lymphocyte, macaca fascicularis, macaca mulatta, macaca nemestrina, macaque, microbiology, monkey, mononuclear, nonhuman, parasitology, peripheral, pharmacodynamic, pharmacokinetic, photo, pigtailed, platelet, primate, radiography, research, rhesus, science, testing, ultrasound, urinalysis, vaccine, vervet has parent organization: University of Louisiana; Louisiana; USA NIH Office of the Director R24 OD010947;
NCRR U42 RR01 5087
nif-0000-24364 SCR_008279 NIRC 2026-02-13 10:56:09 41
Baboon Research Resouces
 
Resource Report
Resource Website
10+ mentions
Baboon Research Resouces (RRID:SCR_008333) biomaterial supply resource, organism supplier, material resource Center that conducts multidisciplinary studies on captive baboons and provides a resource of laboratory-born and laboratory-reared baboons for NIH-sponsored research programs. endogenous, environment, genetic, adult, animal, baboon, behavioral, biomedical, breeding, colony, diversity, infant, juvenile, laboratory, microorganism, model, nih, pathogen, pathology, population, research, science, sex, sponsored, vaccine is listed by: One Mind Biospecimen Bank Listing
has parent organization: University of Oklahoma; Oklahoma; USA
NIH Office of the Director P40 OD010988 nif-0000-25869 https://orip.nih.gov/comparative-medicine/programs/vertebrate-models http://www.ouhsc.edu/Compmed/BaboonResearchResources.asp SCR_008333 Baboon 2026-02-13 10:56:12 11
MARRVEL
 
Resource Report
Resource Website
10+ mentions
MARRVEL (RRID:SCR_016871) MARRVEL data analysis service, analysis service resource, data or information resource, production service resource, service resource, database Web tool to search multiple public variant databases simultaneously and provide a unified interface to facilitate the search process. Used for integration of human and model organism genetic resources to facilitate functional annotation of the human genome. Used for analysis of human genes and variants by cross-disciplinary integration of records available in public databases to facilitate clinical diagnosis and basic research. integration, database, model, genetic, resource, functional, annotation, genome, data, analysis, dataset, rare, variant, exploration, bio.tools uses: OMIM
uses: ClinVar
uses: DECIPHER
uses: Geno2MP
uses: Database of Genomic Variants
is used by: Hypothesis Center
is listed by: bio.tools
is listed by: Debian
NINDS 1U54NS093793;
NIH Office of the Director R24 OD022005;
The Robert and Janice McNair Foundation ;
Baylor College of Medicine Medical Scientist Training Program ;
NINDS U54 NS093793;
NIGMS R01 GM067858;
NIGMS R01 GM120033;
NSF DMS 1263932;
CPRIT RP170387;
Houston Endowment ;
Huffington Foundation ;
Belfer Foundation ;
T T Chao Family Foundation ;
NIGMS R01 GM067761;
NIGMS R01 GM084947;
NCRR R24 RR032668;
NIH Office of the Director R24 OD021997;
NCI P30 CA06516;
NHGRI U01 HG007709;
Simons Foundation
PMID:28502612 Free, Public, Freely available biotools:marrvel https://bio.tools/marrvel SCR_016871 Model organism Aggregated Resources for Rare Variant ExpLoration 2026-02-13 10:57:47 22
SPARC Portal
 
Resource Report
Resource Website
100+ mentions
SPARC Portal (RRID:SCR_017041) SPARC.science data repository, storage service resource, service resource SPARC data repository as of 2023 is an open data repository developed as part of the NIH SPARC initiative and has been used by SPARC funded investigator groups to curate and publish high quality datasets related to the autonomic nervous system. We are thrilled that as of August 2022, SPARC is accepting datasets from investigators that are not funded through the NIH SPARC program. The NIH's Common Fund Stimulating Peripheral Activity to Relieve Conditions (SPARC) program aims to transform our understanding of these nerve-organ interactions and ultimately advance neuromodulation field toward precise treatment of diseases and conditions for which conventional therapies fall short. Nervous system, periphery, organ, human, FASEB list, repository, curated uses: Protocols.io
uses: Brain Imaging Data Structure (BIDs)
uses: Physiome Model Repository
uses: SciGraph
uses: o²S²PARC
uses: SODA
uses: Blackfynn Discover
uses: ApiNATOMY
uses: Biolucida
uses: TissueMaker
uses: ScaffoldMaker
uses: ScaffoldFitter
uses: OpenCOR
uses: Pennsieve Data Management Platform
uses: InterLex
uses: Neurolucida 360
uses: SciCrunch
uses: Tissue Mapper
uses: Vesselucida 360
uses: DataCite
uses: TissueMaker
is used by: NIH Heal Project
is recommended by: NIDDK Information Network (dkNET)
is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases
is recommended by: National Library of Medicine
is related to: SPARC Anatomy Working Group
is related to: HORNET CENTER FOR AUTONOMIC NERVE RECORDING AND STIMULATION SYSTEMS
is related to: NIH PRECISION Human Pain Network
is related to: SCKAN Explorer
is related to: SCKANNER
works with: SPARC Data Standard
has organization facet: o²S²PARC
has organization facet: SODA
has organization facet: SPARC Anatomy Working Group
has organization facet: Blackfynn Discover
has organization facet: ApiNATOMY
has organization facet: Pennsieve Data Management Platform
NIH Office of the Director OD025349;
NIH Office of the Director OD030213;
NIH Office of the Director OD032619;
NIH Office of the Director OD030541;
NIH Office of the Director OD026585;
NIH Office of the Director OD024908;
NIH Office of the Director OD025306;
NIH Office of the Director OD023849
PMID:34248680
DOI:10.1101/2021.02.10.430563
Free, Freely available, DOI:10.26275, r3d100013719 https://commonfund.nih.gov/sparc
https://docs.sparc.science/
https://data.sparc.science/
https://doi.org/10.26275
https://doi.dx/10.26275
https://sparc.science/data?type=dataset
https://doi.org/10.17616/R31NJN2V
SCR_017041 , SPARC Project, SPARC Repository, Stimulating Peripheral Activity to Relieve Conditions 2026-02-13 10:57:55 115
Juicer
 
Resource Report
Resource Website
100+ mentions
Juicer (RRID:SCR_017226) data analysis software, software resource, data processing software, software application Software platform for analyzing kilobase resolution Hi-C data. Open source tool for analyzing terabase scale Hi-C datasets. Allowes to transform raw sequence data into normalized contact maps. analysis, kilobase, resolution, Hi-C, data, terabase, dataset, transform, raw, sequence, normalized, contact, map has parent organization: Baylor College of Medicine; Houston; Texas NIH Office of the Director DP2 OD008540;
NHLBI U01 HL130010;
NSF PHY-1427654;
NHGRI HG006193;
Welch Foundation ;
Cancer Prevention Research Institute of Texas ;
NVIDIA Research Center Award ;
IBM University Challenge Award ;
Google Research Award ;
McNair Medical Institute Scholar Award ;
President Early Career Award in Science and Engineering ;
NHGRI HG003067;
PD Soros Fellowship
PMID:27467249 Free, Available for download, Freely available SCR_017226 2026-02-13 10:57:55 108
JAX Cre Repository
 
Resource Report
Resource Website
1+ mentions
JAX Cre Repository (RRID:SCR_005566) Cre Repository biomaterial supply resource, organism supplier, material resource Repository of Cre Driver lines and related information resources. Their services include analysis of Cre line excision function in both target and non-target tissues using Cre reporter lines and presenting the annotated data in the expression data portion of this website, http://cre.jax.org/data.html. cre, cre reporter, organism, cre driver line, cryopreserved, live, cre, cre expression, cre reporter strain, cre strain with floxed allele, image, strain, expression data, neurobiology is listed by: One Mind Biospecimen Bank Listing
is related to: CRE Driver Network
is related to: Allen Institute for Brain Science Transgenic Mouse Study
is related to: Pleiades Promoter Project: Genomic Resources Advancing Therapies for Brain Disorders
is related to: Recombinase (cre) Activity
has parent organization: Jackson Laboratory
Cre, Cre expression, Cre reporter strain, Cre strain with floxed allele NIH Blueprint for Neuroscience Research ;
NIDCR ;
NCRR RR03 2656;
NCRR RR026117;
NCRR RR001183;
NIH Office of the Director OD011190;
NIH Office of the Director OD010972;
NIH Office of the Director DE020052
Public nlx_144662 SCR_005566 Jackson Laboratory Cre Repository, Cre Driver Strain Resources, The Jackson Laboratory Cre Repository 2026-02-13 10:55:39 5
Geneshot
 
Resource Report
Resource Website
1+ mentions
Geneshot (RRID:SCR_017582) data access protocol, software resource, web service Software tool as search engine for ranking genes from arbitrary text queries. Enables to enter arbitrary search terms, to receive ranked lists of genes relevant to search terms. Returned ranked gene lists contain genes that were previously published in association with search terms, as well as genes predicted to be associated with terms based on data integration from multiple sources. Search results are presented with interactive visualizations. Ranking, gene, arbitrary, text, query, list, predict, association, data, integration, interactive, visualization, bio.tools is listed by: Debian
is listed by: bio.tools
NHLBI U54 HL127624;
NCI U24 CA224260;
NIGMS T32 GM062754;
NIH Office of the Director OT3OD025467
PMID:31114885 Free, Freely available biotools:Geneshot https://bio.tools/Geneshot SCR_017582 2026-02-13 10:58:05 4
CRISPR-ERA
 
Resource Report
Resource Website
10+ mentions
CRISPR-ERA (RRID:SCR_018710) data access protocol, software resource, web service, service resource Software comprehensive design tool for CRISPR mediated gene editing, repression and activation. Fast and comprehensive guide RNA design tool for genome editing, repression and activation. Used for automated genome wide sgRNA design. Design tool, CRISPR mediated gene editing, gene repression, gene activation, guide RNA design, genome, automated genome, sgRNA design, bio.tools is listed by: Debian
is listed by: bio.tools
has parent organization: Stanford University; Stanford; California
NIH Office of The Director ;
NIDCR ;
NSFC ;
FANEDD ;
NIH Office of the Director OD017887;
NIDA R01 DA036858
PMID:26209430 Free, Freely available biotools:CRISPR-ERA https://bio.tools/CRISPR-ERA SCR_018710 CRISP-Editing, Repression and Activation 2026-02-13 10:58:22 10
National Swine Resource and Research Center
 
Resource Report
Resource Website
50+ mentions
National Swine Resource and Research Center (RRID:SCR_006855) NSRRC biomaterial supply resource, organism supplier, cell repository, material resource Provides access to critically needed swine models of human health and disease as well as a central resource for reagents, creation of new genetically modified swine, and information and training related to use of swine models in biomedical research. RIN, Resource Information Network, pig, fetal fibroblast, live animal, tissue, fibroblast, fetus, genetically modified pig, biomaterial manufacture, genome, genotyping, genetics, reproduction, breeding, health monitoring, cryopreservation, phenotyping, consulting, RRID Community Authority is used by: Integrated Animals
is listed by: One Mind Biospecimen Bank Listing
is listed by: Resource Information Network
is related to: One Mind Biospecimen Bank Listing
has parent organization: University of Missouri; Missouri; USA
NIH Office of the Director U42 OD011140;
NIAID ;
NHLBI
Public, To investigators, Application required nif-0000-12086 SCR_006855 National Swine Resource Research Center 2026-02-13 10:55:56 79
Tetrahymena Stock Center
 
Resource Report
Resource Website
50+ mentions
Tetrahymena Stock Center (RRID:SCR_008362) TSC biomaterial supply resource, material resource Centralized repository and distribution site for variety of Tetrahymena strains and species. Maintains diverse array of wild type, mutant, and genetically engineered strains of T. thermophila, the most commonly used laboratory species, and variety of other species derived from both laboratory maintained stocks and wild isolates. All stocks are stored in liquid nitrogen to maintain genetic integrity and prevent senescence. In addition to providing worldwide access to strains currently in collection, TSC continually upgrades collection by accepting deposition of newly developed laboratory strains and well characterized wild isolates collected from clearly defined natural sites. RIN, Resource Information Network, eukaryota, genetics, biology, cell, cellular, culture, model, molecular, protozoan, repository, research, tetrahymena thermophila, RRID Community Authority is used by: Integrated Animals
is listed by: Resource Information Network
has parent organization: Cornell University; New York; USA
NIH Office of the Director P40 OD010964 nif-0000-25476 http://vivo.cornell.edu/individual/vivo/individual27605 SCR_008362 Resource Center For Tetrahymena Thermophila 2026-02-13 10:56:10 88
Drosophila Genomics Resource Center
 
Resource Report
Resource Website
500+ mentions
Drosophila Genomics Resource Center (RRID:SCR_002845) DGRC biomaterial supply resource, cell repository, material resource Serves Drosophila research community by collecting and distributing DNA clones and vectors; collecting and distributing Drosophila cell lines; developing and testing genomics technologies for use in Drosophila and assisting members of the research community in their use. RIN, Resource Information Network, expression, gene, array, cell, clone, dna, drosophila, genomics, karyotype, material, microarray, reagent, research, technology, transcriptome, transformation, vector, FASEB list, RRID Community Authority is listed by: One Mind Biospecimen Bank Listing
is listed by: Resource Information Network
has parent organization: Indiana University; Indiana; USA
works with: Cellosaurus
NIH Office of the Director P40 OD010949 Restricted nif-0000-25420 https://orip.nih.gov/comparative-medicine/programs/genetic-biological-and-information-resources https://dgrc.cgb.indiana.edu/ SCR_002845 Drosophila Genomics Resource Center at Indiana University 2026-02-13 10:55:07 596
Baylor College of Medicine Human Genome Sequencing Center
 
Resource Report
Resource Website
50+ mentions
Baylor College of Medicine Human Genome Sequencing Center (RRID:SCR_013605) BCM-HGSC production service resource, service resource, analysis service resource Center for high-throughput DNA sequence generation and the accompanying analysis. The sequence data generated by the center's machines are analyzed in a complex bioinformatics pipeline, and the data are deposited regularly in the public databases at the National Center for Biotechnology Information (NCBI). next-generation sequencing, genetic variation, genome, dna sequence, FASEB list has parent organization: Baylor University; Texas; USA
is parent organization of: Mercury
is parent organization of: xAtlas
NIH Office of the Director R24 OD011173 nif-0000-10162 SCR_013605 Human Genome Sequencing Center, BCM HGSC 2026-02-13 10:57:09 65
Kinase Enrichment Analysis 3
 
Resource Report
Resource Website
10+ mentions
Kinase Enrichment Analysis 3 (RRID:SCR_023623) KEA3 data access protocol, software resource, web service Web server application that infers overrepresentation of upstream kinases whose putative substrates are in user inputted list of proteins. Used to analyze data from phosphoproteomics and proteomics studies to predict upstream kinases responsible for observed differential phosphorylations. overrepresentation of upstream kinases, upstream kinases, upstream kinases substrates, user inputted list of proteins, has parent organization: Icahn School of Medicine at Mount Sinai; New York; USA NHLBI U54 HL127624;
NCI U24 CA224260;
NIGMS T32 GM062754;
NIH Office of the Director OT3 OD025467
PMID:34019655 Free, Freely available SCR_023623 2026-02-13 10:59:01 11
GeneRanger
 
Resource Report
Resource Website
GeneRanger (RRID:SCR_023622) data access protocol, software resource, web service Web server application that provides access to processed data about expression of human genes and proteins across human cell types, tissues, and cell lines from several atlases. Used to explore single gene expression across tissues and cell types. explore single gene expression, gene expression across tissues and cell types, gene expression, is related to: TargetRanger
has parent organization: Icahn School of Medicine at Mount Sinai; New York; USA
NCI U24CA264250;
NCI U24CA224260;
NIDDK R01DK131525;
NIH Office of the Director OT2OD030160;
NIDDK RC2DK131995;
NCI U24CA271114
PMID:37166966 Free, Freely available SCR_023622 2026-02-13 10:58:59 0
TargetRanger
 
Resource Report
Resource Website
1+ mentions
TargetRanger (RRID:SCR_023621) data access protocol, software resource, web service Web server application that identifies targets from user inputted RNA-seq samples collected from cells we wish to target. By comparing inputted samples with processed RNA-seq and proteomics data from several atlases, TargetRanger identifies genes that are highly expressed in target cells while lowly expressed across normal human cell types, tissues, and cell lines. identify targets, identify genes, user inputted RNA-seq samples, target cells, proteomics data, human cells, is related to: GeneRanger
has parent organization: Icahn School of Medicine at Mount Sinai; New York; USA
NCI U24CA264250;
NCI U24CA224260;
NIDDK R01DK131525;
NIH Office of the Director OT2OD030160;
NIDDK RC2DK131995;
NCI U24CA271114
PMID:37166966 Free, Freely available https://maayanlab.github.io/Workshop.io/generanger SCR_023621 2026-02-13 10:59:03 2
microbeMASST
 
Resource Report
Resource Website
1+ mentions
microbeMASST (RRID:SCR_024713) data access protocol, software resource, web service Web taxonomically informed mass spectrometry search tool, tackles limited microbial metabolite annotation in untargeted metabolomics experiments. Leveraging database of over 60,000 microbial monocultures, users can search known and unknown MS/MS spectra and link them to their respective microbial producers via MS/MS fragmentation patterns. Identification of microbial derived metabolites, microbial metabolomics data, microbial metabolite annotation, taxonomy, mass spectrometry search tool, searching tool, bacteria, fungi, metabolomics, microbiome, search known and unknown MS/MS spectra, is related to: GNPS MASST NIDDK U24DK133658;
NIA U19AG063744;
NIGMS 1DP2GM137413;
Korean Government ;
Austrian Science Fund ;
German Research Foundation ;
Sao Paulo Research Foundation ;
Mexican National Council of Science and Technology ;
NIGMS R01GM107550;
NSF ;
Research Council of Norway ;
NIAID R01AI167860;
NIDDK T32DK007202;
NIGMS 1R01GM132649;
NIGMS R35GM142938;
NIDDK U01DK119702;
NIH Office of the Director S10 OD021750;
NLM 1R01LM013115
PMID:37577622 Free, Freely available, SCR_024713 2026-02-13 10:59:17 6
Fitness Browser
 
Resource Report
Resource Website
1+ mentions
Fitness Browser (RRID:SCR_018981) data access protocol, data or information resource, software resource, web service Web tool for browsing genome wide fitness experiments for diverse bacteria from Deutschbauer lab, the Arkin lab, and collaborators. Collection of mutant phenotypes for bacterial genes of unknown function. Genome browser, bacteria, mutant phenotype, bacterial genes, unknown function, data has parent organization: University of California at Berkeley; Berkeley; USA NCRR S10 RR029668;
NCRR S10 RR027303;
NIH Office of the Director OD018174;
Office of Science of the US Department of Energy
PMID:29769716 Free, Freely available SCR_018981 2026-02-13 10:58:20 8
nTracer
 
Resource Report
Resource Website
nTracer (RRID:SCR_023032) image processing software, software resource, data processing software, software application Software tool as plug-in for ImageJ software. Used for tracing microscopic images. tracing microscopic images is a plug in for: ImageJ Michigan miBRAIN initiative ;
NIAID R01AI130303;
NSF NSF-1707316;
NIMH R01MH110932;
NIGMS F31GM116517;
NINDS R01NS095367;
NIMH P50MH09427;
NIH Office of the Director DP2OD006514;
NINDS R01NS076467;
NINDS U01NS090449;
NIGMS P41GM10371;
Multidisciplinary University Research Initiative Army Research Office
PMID:30715234 Free, Available for download, Freely available SCR_023032 2026-02-13 10:58:51 0
Ambystoma Genetic Stock Center
 
Resource Report
Resource Website
100+ mentions
Ambystoma Genetic Stock Center (RRID:SCR_006372) AGSC biomaterial supply resource, organism supplier, material resource Maintains breeding colony of Mexican axolotls (Ambystoma mexicanum) that distributes axolotl embryos, larvae, and adults to laboratories and classrooms throughout the United States and abroad. Their mission is to serve biology research programs and educators by providing experimental material and expertise and by encouraging and facilitating the exchange of information and ideas. RIN, Resource Information Network, embryo, larvae, adult, k-12 teacher, ambystoma, salamander, RRID Community Authority is used by: Integrated Animals
is listed by: One Mind Biospecimen Bank Listing
is listed by: Resource Information Network
has parent organization: University of Kentucky; Kentucky; USA
NIH Office of the Director P40 OD019794;
NIH Office of the Director R24 OD010435
PMID:16359543 Public. You must be affiliated with an IACUC-sanctioned university or other scientific program to receive animals. No animals will be sold for informal research or personal interest requests. nlx_152125 https://orip.nih.gov/comparative-medicine/programs/vertebrate-models http://www.ambystoma.org/genetic-stock-center SCR_006372 A. mexicanum stock center 2026-02-13 10:55:48 231
Northwestern University Mary Beth Donnelley Clinical Pharmacology Core Facility
 
Resource Report
Resource Website
Northwestern University Mary Beth Donnelley Clinical Pharmacology Core Facility (RRID:SCR_017768) core facility, access service resource, service resource Core provides quantitative mass spectrometry based support for in vitro studies and both preclinical and clinical studies of variety of small molecules, including cancer chemotherapeutic agents, analgesics, and antidepressants. Expertise includes optimizing design, conduct, analysis, interpretation, and reportage of pharmacokinetic studies. Helps with biological sample preparation, quantitative mass spectrometric drug concentration measurement, and drug concentration versus time data modeling. Small molecule concentrations in plasma and other body fluids are measured using Sciex 6500 QTrap with UPLC and nano LC or an Agilent HPLC system linked to Applied Biosystems API 3000 triple quadrupole mass spectrometer after sample preparation by, for example, solid-phase extraction. Drug concentration versus time relationships are fitted to various compartmental pharmacokinetic models using commercially available and specialized software. Clinical, pre clinical, pharmacology, quantitative, mass, spectrometry, cancer, chemotherapeutic, agent, analgesic, antidepressant, design, analysis, pharmacokinetic, study, drug, concentratiion, measure, sample, preparation, service, core NIH Office of the Director S10 OD021786 Restricted ABRF_326 SCR_017768 Mary Beth Donnelley Clinical Pharmacology Core Facility 2026-02-13 10:58:01 0

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