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Resource Name Proper Citation Abbreviations Resource Type Description Keywords Resource Relationships Related Condition Funding Defining Citation Availability Website Status Alternate IDs Alternate URLs Old URLs Parent Organization Resource ID Synonyms Record Last Update Mentions Count
Appyters
 
Resource Report
Resource Website
1+ mentions
Appyters (RRID:SCR_021245) software resource, web application Collection of web-based software applications that enable users to execute bioinformatics workflows without coding. Turns Jupyter notebooks into fully functional standalone web-based bioinformatics applications. Each Appyter application introduces data entry form for uploading or fetching data, as well as for selecting options for various settings. Once user presses Submit, Appyter is executed in cloud and user is presented with Jupyter Notebook report that contain results. Report includes markdown text, interactive and static figures, and source code. Appyter users can share the link to the output report, as well as download the fully executable notebook for execution on other platforms. Jupyter Notebooks, data-driven web apps collection, Jupyter Notebook results report is used by: Hypothesis Center
has parent organization: Icahn School of Medicine at Mount Sinai; New York; USA
NCI U24 CA224260;
NHLBI U54 HL127624;
NIH Office of the Director OT2 OD030160
DOI:10.1016/j.patter.2021.100213 Free, Available for download, Freely available https://github.com/MaayanLab/appyter
https://github.com/MaayanLab/appyter-catalog
SCR_021245 2026-02-12 09:47:45 9
Zebrafish International Resource Center
 
Resource Report
Resource Website
100+ mentions
Zebrafish International Resource Center (RRID:SCR_005065) ZIRC biomaterial supply resource, organism supplier, material resource Center that supplies access to wild-type, mutant, and transgenic zebrafish lines, EST's/cDNAs, antibodies and fish health services. ZIRC Health Services include diagnostic pathology testing for zebrafish and other small laboratory fish species. RIN, Resource Information Network, zebrafish line, expressed sequence tag, cdna, fish, antibody, pathology, research, embryo, adult, RRID Community Authority is used by: Integrated Animals
is listed by: One Mind Biospecimen Bank Listing
is listed by: Resource Information Network
is related to: One Mind Biospecimen Bank Listing
is related to: ZMP
is related to: NIF Data Federation
is related to: Zebrafish Information Network (ZFIN)
is related to: zfishbook
has parent organization: University of Oregon; Oregon; USA
NICHD HD12546;
NCRR RR12546;
W.M. Keck Foundation ;
NIH Office of the Director P40 OD011021
Restricted nif-0000-00242 http://zebrafish.org/home/guide.php SCR_005065 Zebrafish International Resource Center 2026-02-13 10:55:34 445
National Resource for Aplysia
 
Resource Report
Resource Website
10+ mentions
National Resource for Aplysia (RRID:SCR_008361) National Resource for Aplysia biomaterial supply resource, organism supplier, material resource Center where Aplysia californica are cultured and raised for research purposes. Aplysia from the facility serve in research on genomics, human brain function, toxicology for developmental studies, natural products, chemistry for isolation of novel anti-tumor and antibacterial compounds, in the study of transport by digestive tissues and have potential for use in studies of substance addiction and nerve senescence and regeneration. disease, genomics, aplysia californica, research, brain has parent organization: University of Miami; Florida; USA NIH Office of the Director P40 OD010952;
NCRR
nif-0000-25472 http://aplysia.miami.edu/ SCR_008361 2026-02-13 10:56:13 14
Phenograph
 
Resource Report
Resource Website
100+ mentions
Phenograph (RRID:SCR_016919) PhenoGraph data analysis software, software resource, data processing software, software application Software tool as clustering method designed for high dimensional single cell data. Algorithmically defines phenotypes in high dimensional single cell data. Used for large scale analysis of single cell heterogeneity. high, dimention, single, cell, data, phenotype, analysis, heterogeneity uses: Python Programming Language
is related to: Rphenograph
NIGMS R00 GM104148;
NICHD DP1 HD084071;
NCI R01 CA164729;
NCI U54 CA121852;
NCI R01 CA130826;
NCI U54 CA143907;
US Department of Health and Human Services HHSN272200700038C;
NIH N01 HV00242;
NCI P01 CA034233;
NIAID U19 AI057229;
NCI U54 CA149145;
US FDA HHSF223201210194C;
US DOD W81XWH1210591;
Entertainment Industry Foundation ;
Rachford and Carlota Harris Endowed Professorship ;
CIRM DR1 01477;
CIRM RB201592;
Stand Up To Cancer Phillip A. Sharp Award SU2CAACRPS04;
Packard Fellowship for Science and Engineering ;
NIH Office of the Director DP2 OD002414
PMID:26095251 Free, Available for download, Freely available https://github.com/JinmiaoChenLab/Rphenograph https://github.com/jacoblevine/PhenoGraph SCR_016919 2026-02-13 10:57:48 213
National Xenopus Resource
 
Resource Report
Resource Website
100+ mentions
National Xenopus Resource (RRID:SCR_013731) NXR biomaterial supply resource, organism supplier, material resource National stock center for X. laevis and X. tropicalis and training center for advanced technologies (e.g. husbandry, cell biology, imaging, genetics, transgenesis, genomics). RIN, Resource Information Network, Xenopus, laevis, tropicalis, RRID Community Authority is used by: Integrated Animals
is listed by: Resource Information Network
NIH Office of the Director P40 OD010997;
NIH Office of the Director R24 OD030008
https://orip.nih.gov/comparative-medicine/programs/vertebrate-models SCR_013731 2026-02-13 10:57:11 308
Caribbean Primate Research Center
 
Resource Report
Resource Website
1+ mentions
Caribbean Primate Research Center (RRID:SCR_008345) CPRC biomaterial supply resource, organism supplier, material resource Center for the study of non-human primates. Its mission is the study and use of non-human primates as models for studies of social and biological interactions and for the discovery of methods of prevention, diagnosis and treatment of diseases that afflict humans. Through the stewardship of three unique facilities—Cayo Santiago Field Station, Sabana Seca Field Station, and the Laboratory of Primate Morphology supports a diverse range of research programs that enhance understanding of primate biology and behavior, with direct applications in biomedical and translational research. NPRC, NPRC Consortium, ORIP, environment, genetic, antigen, behavior, biological, biomedical, birth, blood, conception, dengue, disease, human, immune system, laboratory, macaca mulatta, macaque, model, monkey, morphology, movement, pathology, primate, reproductive biology, researcher, rh, rhesus, scientific, serological, siv, skeletal system, vaccine, variation, virology is listed by: National Primate Research Center Consortium
has parent organization: University of Puerto Rico; Puerto Rico; USA
NIH Office of the Director P40 OD012217 nif-0000-25870 https://orip.nih.gov/comparative-medicine/programs/vertebrate-models SCR_008345 Caribbean Primate Research Center Program 2026-02-13 10:56:13 1
Xiphophorus Genetic Stock Center
 
Resource Report
Resource Website
100+ mentions
Xiphophorus Genetic Stock Center (RRID:SCR_008340) biomaterial supply resource, organism supplier, material resource Supplier of xiphophorus (platyfish or swordtails) from pedigreed parental lines, representing variety of species. In addition to supplying strains and providing consultation on husbandry and genetic questions, the XGSC produces custom interspecies hybrids (both first generation F1, and backcross hybrid generation BC1) for a variety of projects. RIN, Resource Information Network, est, fish, cryopreservation, microsatellite, swordtail, RRID Community Authority is used by: Integrated Animals
is listed by: Resource Information Network
has parent organization: Texas State University; Texas; USA
NCI P01 CA75137;
NIH Office of the Director R24 OD011120;
University of Texas MD Anderson Center
nif-0000-24971 https://orip.nih.gov/comparative-medicine/programs/vertebrate-models SCR_008340 XGSC 2026-02-13 10:56:09 109
trRosetta
 
Resource Report
Resource Website
50+ mentions
trRosetta (RRID:SCR_021181) software resource, simulation software, service resource, software application Software tool for fast and accurate protein structure prediction. Builds protein structure based on direct energy minimizations with restrained Rosetta. Restraints include inter-residue distance and orientation distributions, predicted by deep residual neural network. Homologous templates are included in network prediction to improve accuracy for easy targets. protein structure, restraint-guided structure generation, protein structure prediction uses: Rosetta National Natural Science Foundation of China ;
Fok Ying-Tong Education Foundation ;
Key Laboratory for Medical Data Analysis and Statistical Research of Tianjin ;
Thousand Youth Talents Plan of China ;
China Scholarship Council ;
NIGMS R01 GM092802;
NIH Office of the Director DP5 OD026389
PMID:31896580 Free, Freely available https://github.com/gjoni/trRosetta SCR_021181 transformed restrained Rosetta 2026-02-13 10:58:29 67
Texas A and M Health Science Center MSC Distribution
 
Resource Report
Resource Website
10+ mentions
Texas A and M Health Science Center MSC Distribution (RRID:SCR_005522) Texas A&M MSC Distribution biomaterial supply resource, cell repository, material resource THIS RESOURCE IS NO LONGER IN SERVICE. Documented on October 29,2025. Center for cell line distribution and stock at Texas A&M Health Science Center College of Medicine Institute for Regenerative Medicine. Scott & White have received a grant funded by the NIH to provide well-characterized human adult stem cells, rat stem cells, and mouse stem cells to academic researchers worldwide upon request. stem cell, bone marrow mesenchymal stem cell, multipotent mesenchymal stromal cell, marrow stromal cell, frozen, bone marrow, adult, adult human, adult rat, lewis rat, c57bl/6j, experimental protocol is listed by: One Mind Biospecimen Bank Listing
has parent organization: Texas A and M Health Science Center College of Medicine; Texas; USA
NIH Office of the Director P40 OD011050 THIS RESOURCE IS NO LONGER IN SERVICE. nlx_144619, SCR_013734 SCR_005522 Texas A&M Health Science Center MSC Distribution, Texas A M Health Science Center MSC Distribution, Institute for Regenerative Medicine at Scott & White MSC Distribution, Texas A&M Health Science Center College of Medicine Institute for Regenerative Medicine MSC Distribution, Adult Mesenchymal Stem Cell Resource 2026-02-13 10:55:38 19
California National Primate Research Center
 
Resource Report
Resource Website
10+ mentions
California National Primate Research Center (RRID:SCR_006426) CNPRC data or information resource, organization portal, portal Center for investigators studying human health and disease, offering the opportunity to assess the causes of disease, and new treatment methods in nonhuman primate models that closely recapitulate humans. Its mission is to provide interdisciplinary programs in biomedical research on significant human health-related problems in which nonhuman primates are the models of choice. NPRC, NPRC Consortium, ORIP, drug, genetic, animal, biology, cause, cell, cynamolous, developmental, disease, health, human, immunology, model, nonhuman primate, physiology, primate, procedure, psychology, reproductive, surgery, surgical, therapy, titi, treatment, veterinarian, virology is listed by: Biositemaps
is listed by: National Primate Research Center Consortium
has parent organization: University of California at Davis; California; USA
is parent organization of: California National Primate Research Center Analytical and Resource Core
NCRR P51 RR000169;
NIH Office of the Director P51 OD011107;
NIH Office of the Director U42 OD010990
Free, Freely available, nif-0000-24356 https://orip.nih.gov/comparative-medicine/programs/vertebrate-models http://www.cnprc.ucdavis.edu SCR_006426 2026-02-13 10:55:50 21
Nonhuman Primate Reagent Resource
 
Resource Report
Resource Website
100+ mentions
Nonhuman Primate Reagent Resource (RRID:SCR_012986) NHPRR material resource, antibody supplier, reagent supplier Center that facilitates the optimal use of nonhuman primate models in biomedical research by identifying, developing, characterizing and producing reagents for monitoring or modulating immune responses. They distribute non-human primate-specific antibodies for in vitro diagnostics, as well as develop and produce primate recombinant antibodies for in vivo cell depletion or modulating immune responses. anti-ig, antibody, biomedical, cell, depletion, diagnostic, immune, immunoglobulin, in vitro, in vivo, macaque, monkey, nonhuman, primate, reagent, recombinant, research, response, specie NIH Office of the Director R24 OD010976;
NIH HHSN272200900037C;
NIH HHSN286200400101C;
NIH HHSN2722001300031C;
NIAID AI126683;
NCRR RR016001;
NIAID AI040101;
NIH 272200900037C;
NIH 286200400101C;
NIH AI-126683;
NIH OD-010976;
NIH RR-016001;
NIH 2722001300031C;
NIH 272201300031C;
NIH AI-040101;
NIH NHPRR
nif-0000-24368 https://orip.nih.gov/comparative-medicine/programs/vertebrate-models
http://www.nhpreagents.org/NHP/contact.aspx
http://nhpreagents.bidmc.harvard.edu/NHP/default.aspx SCR_012986 nhp reagents, Nonhuman Primate Reagent Resources, Non-human primate repository, Non human Primate Reagent Resources, NHP Reagent Resource, nhpreagents, NIH Nonhuman Primate Reagent Resource, NHP Reagent, nhpreagent, Non-human Primate Reagent Resources 2026-02-13 10:57:03 221
Squirrel Monkey Breeding and Research Resource
 
Resource Report
Resource Website
10+ mentions
Squirrel Monkey Breeding and Research Resource (RRID:SCR_006291) SMBRR material resource, portal, data or information resource, tissue bank, biomaterial supply resource, project portal SMBRR maintains the only self-sustaining national research resource of laboratory-born squirrel monkeys, their tissues and other biological materials, as well as the expertise to carry out research on this animal. Scientists with NIH grants utilize squirrel monkeys to study many diseases that threaten human health including Alzheimer's disease and other disorders of the central nervous system, drug addiction, malaria, and viral diseases. Center that carries out research on squirrel monkey biology and its research uses. It meets the needs of the biomedical research community in three ways: providing national resource for laboratory-born squirrel monkeys, having active research component that continues to add new information about the biology of the squirrel monkey with a particular emphasis on reproduction and colony management, and acts as a source of expertise for squirrel monkey biology, management and husbandry. ORIP, Office of Research Infrastructure Programs, reproductive biology, behavior, reproduction, disease, colony management, tissue, live animal, bodily fluid is listed by: One Mind Biospecimen Bank Listing
has parent organization: University of Texas MD Anderson Cancer Center
NIH Office of the Director P40 OD010938 Public nlx_151947 https://reporter.nih.gov/search/oopkAZDMqkCSLpwC7X2hHg/project-details/10558468
https://orip.nih.gov/comparative-medicine/programs/vertebrate-models
http://www.kccmr.org/
SCR_006291 Keeling Center for Comparative Medicine and Research Squirrel Monkey Breeding and Research Resource, KCCMR SMBRR, KCCMR Squirrel Monkey Breeding and Research Resource 2026-02-13 10:55:49 33
X2K Web
 
Resource Report
Resource Website
10+ mentions
X2K Web (RRID:SCR_023624) X2K data access protocol, software resource, web service Web service to predict involvement of upstream cell signaling pathways, given signature of differentially expressed genes. Used to linking expression signatures to upstream cell signaling networks. predicts involvement of upstream cell signaling pathways, differentially expressed genes, linking expression signatures, upstream cell signaling networks, has parent organization: Icahn School of Medicine at Mount Sinai; New York; USA NHLBI U54 HL127624;
NCI U24 CA224260;
NIH Office of the Director OT3 OD025467
PMID:29800326 Free, Freely available https://github.com/MaayanLab/x2k_web SCR_023624 eXpression2Kinases (X2K) Web 2026-02-13 10:59:00 10
Transgenic Huntington's Disease Monkey Resources
 
Resource Report
Resource Website
Transgenic Huntington's Disease Monkey Resources (RRID:SCR_014560) THDMR biomaterial supply resource, material resource Center for resources to facilitate basic and preclinical applications of the transgenic Huntington's disease (HD) monkey model to advance scientific knowledge and the discovery of a cure for HD. Their resources include longitudinal biomaterials and MRI data, postmortem biomaterials, and research proposal assistance. monkey, biomaterial supply resource, transgenic, huntington's disease, longitudinal, postmortem, mri, research assistance has parent organization: Emory University; Georgia; USA Huntington's disease NIH Office of the Director R24 OD010930 Biomaterials are available via request https://orip.nih.gov/comparative-medicine/programs/vertebrate-models SCR_014560 Transgenic Huntington's Disease Monkey Resources (THDMR) 2026-02-13 10:57:21 0
University of California at Davis Mutant Mouse Resource and Research Center
 
Resource Report
Resource Website
100+ mentions
University of California at Davis Mutant Mouse Resource and Research Center (RRID:SCR_016448) MMRRC UCD, UCD MMRRC biomaterial supply resource, material resource Center that imports, archives, maintains, and distributes mutant mouse alleles as live mice, frozen germplasm, stem cells, and molecular vectors for use in biomedical research. The MMRRC Davis receives transgenics, knockouts, and other kinds of mutant mouse lines at no cost to the donor, and after re-derivation and cryopreservation, distributes breeding stock, germplasm, cells, or tissues of genetically-defined and pathogen-free mice for a small fee to requesting investigators. ABRF, USEDit, mouse, mice, research, genetic, mutant, mutation, transgenic, knockout, research, animal, behavior is listed by: ABRF CoreMarketplace
is related to: USEDit
is organization facet of: Mutant Mouse Resource and Research Center
NIH Office of the Director U42 OD012210;
NIH Office of the Director U42 OD010983
ABRF_1650 https://coremarketplace.org/?FacilityID=1650&citation=1 SCR_016448 Mutant Mouse Resource and Research Center UC Davis, Davis MMRRC, UCD Mutant Mouse Resource and Research Center, UC Davis MMRRC, UC Davis Mutant Mouse Resource and Research Center, Mutant Mouse Resource and Research Center - UCD, Mutant Mouse Resource and Research Center - University of California at Davis, California MMRRC 2026-02-13 10:57:49 186
Mutant Mouse Resource and Research Center - University of Missouri
 
Resource Report
Resource Website
50+ mentions
Mutant Mouse Resource and Research Center - University of Missouri (RRID:SCR_016447) UM MMRRC, MMRRC UM biomaterial supply resource, material resource Center that supplies mice and conducts research projects focused on the role of mice as animal models. Some of these projects include refinement of models to ensure study reproducibility, as well as development and improvement of economical methods for cryopreservation of mouse strains. mice, mouse, supply, genetic, transgenic, knockout, research, mutant is organization facet of: Mutant Mouse Resource and Research Center NIH Office of the Director U42 OD010918 SCR_016447 Mutant Mouse Resource and Research Center - UM, UM Mutant Mouse Resource and Research Center, University of Missouri MMRRC, MMRRC University of Missouri 2026-02-13 10:57:46 53
Referral Center for Animal Models of Human Genetic Diseases
 
Resource Report
Resource Website
Referral Center for Animal Models of Human Genetic Diseases (RRID:SCR_016453) biomaterial supply resource, material resource Center that aims to discover, characterize, maintain breeding colonies, and make available dog and cat models with hereditary diseases homologous to those found in human patients that can be used to translate preclinical trials from kennel to clinic. The animal models represent true orthologs of their respective human disease, involving defects in homologous genes resulting in similar molecular, biochemical, pathological, and clinical phenotype as in human patients. animal, dog, cat, disease, homologue, genetic, colony, breed, model has parent organization: University of Pennsylvania; Philadelphia; USA NIH Office of the Director P40 OD011189 SCR_016453 University of Pennsylvania School of Veterinary Medicine Referral Center for Animal Models of Human Genetic Diseases, UPenn Referral Center for Animal Models of Human Genetic Diseases, PennVet Referral Center for Animal Models of Human Genetic Diseases 2026-02-13 10:57:42 0
Human Tissue and Organ for Research Resource (HTORR)
 
Resource Report
Resource Website
Human Tissue and Organ for Research Resource (HTORR) (RRID:SCR_002859) HTORR biomaterial supply resource, tissue bank, material resource NDRI’s Human Tissue and Organs for Research Resource (HTORR) Program has been funded by the National Institutes of Health (NIH) for over 30 consecutive years to support research programs across multiple disciplines. It is through the HTORR program that NDRI provides academic biomedical investigators with donated normal and diseased human tissues and organs recovered from a diverse donor pool using customized procurement, processing, and preservation and distribution protocols. Our HTORR Program supports academic biomedical research investigators needs by providing: Access to a wide array of human biospecimens from any body system * Customized procurement in a variety of preservation formats including fresh, frozen, and fixed suitable for various analytical techniques * Reduced costs for tissue procurement * Technical support to design your studies utilizing human biospecimens * Letters of support and budgetary information for grant applications tissue, organ, nervous system, pulmonary system, cardiovascular system, endocrine system, eye, bone, cartilage, normal, diseased, human immunodeficiency virus, heart, kidney, lung, brain, liver, eye, bone, joint, disease, rare disease, endocrinology, eye bank, immunology, infectious disease, nephrology, nervous system, ophthalmology, pathology, pulmonary system, research, specimen, toxicology, transplantation, catalog is listed by: One Mind Biospecimen Bank Listing
is listed by: Collaborating for the Advancement of Interdisciplinary Research in Benign Urology
has parent organization: National Disease Research Interchange
has parent organization: National Center for Research Resources
Normal, Disease, Human immunodeficiency virus, Rare disease NIH Office of the Director U42 OD011158 Free, Freely available nif-0000-25417 https://orip.nih.gov/comparative-medicine/programs/genetic-biological-and-information-resources http://www.ncrr.nih.gov/clinical%5Fresearch%5Fresources/resource%5Fdirectory/human_tissue_and_organ_resource_for_research/ SCR_002859 Human Tissue Organ Resource for Research, Human Tissues and Organs for Research, Human Tissues and Organs for Research (HTOR), Human Tissues Organs for Research 2026-02-13 10:55:08 0
SigCom LINCS
 
Resource Report
Resource Website
1+ mentions
SigCom LINCS (RRID:SCR_022275) data access protocol, software resource, web service Web server that serves over million gene expression signatures processed, analyzed, and visualized from LINCS, GTEx, and GEO. Data and metadata search engine for gene expression signatures. FAIR data, data and metadata search engine, gene expression signatures, gene expression signature processed, analyzed, and visualized, LINCS, GTEx, GEO, gene expression signatures, NHLBI U54HL127624;
NIDDK R01DK131525;
NIH Office of the Director OT2OD030160
PMID:35524556 Free, Freely available https://github.com/MaayanLab/sigcom-lincs SCR_022275 SigCom Library of Integrated Network-based Cellular Signatures 2026-02-13 10:58:46 7
Database of Immune Cell Epigenomes
 
Resource Report
Resource Website
50+ mentions
Database of Immune Cell Epigenomes (RRID:SCR_018259) DICE web service, data or information resource, data access protocol, software resource, database Database of Immune Cell Expression, Expression quantitative trait loci (eQTLs) and Epigenomics. Collection of identified cis-eQTLs for 12,254 unique genes, which represent 61% of all protein-coding genes expressed in human cell types. Datasets to help reveal effects of disease risk associated genetic polymorphisms on specific immune cell types, providing mechanistic insights into how they might influence pathogenesis. Data set, immune cell expression, expression quantitative trait loci, epigenomics, data, cis-eQLC, gene, protein coding gene, human cell type, genetic polymorphism disease, immune cell, pathogenesis has parent organization: La Jolla Institute for Immunology William K. Bowes Jr Foundation ;
NIAID R24 AI108564;
NCRR S10 RR027366;
NIH Office of the Director S10 OD016262
PMID:30449622 Free, Freely available SCR_018259 Database of Immune Cell Expression, Expression quantitative trait loci (eQTLs) and Epigenomics 2026-02-13 10:58:09 59

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