Searching the RRID Resource Information Network
SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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GenePaint E15 Atlas Resource Report Resource Website |
GenePaint E15 Atlas (RRID:SCR_002786) | GenePaint Map E15.5 | data or information resource, reference atlas, atlas | Abbreviated reference atlas for the Embryonic 15.5 post conception day mouse. All sections were nissl stained and digitized. To assist in the initial identification of sites of gene expression sites, maps of brains are available for E15.5, P7 and the adult. These maps depict the boundaries of major brain regions (cortex, thalamus, striatum, globus pallidus, ventral striatum, septum, basal forebrain, hippocampus, midbrain, pons, medulla, cerebellum) and also show the more prominent nerve tracts. Maps are most efficiently used by placing the window depicting the map of interest next to the gene expression image. Browsing between planes of sectioning is permitted thus allowing the most appropriate plane to be selected. The annotation of anatomical details such as brain nuclei is currently beyond the scope of the GenePaint database. Hence, such information on the anatomy of the brain and embryo should be obtained from published atlases of mouse anatomy (Kaufman, 1995; Paxinos and Franklin, 2001; Jacobowitz and Abbott, 1997; Schambra et al., 1992; Valverde1998). | expression, gene, gene expression, anatomical, anatomy, basal forebrain, brain, cerebellum, cortex, developmental, digitized, globus pallidus, hippocampus, map, medulla, midbrain, mouse, nerve, nissl staining protocol, nucleus, pons, prenatal, region, septum, striatum, thalamus, tract, ventral striatum, image, nissl stain, embryonic mouse, thalamus, nerve tract, development |
is related to: GenePaint P7 Atlas is related to: GenePaint P56 Mouse Atlas has parent organization: GenePaint |
Free, Freely available | nif-0000-24447 | SCR_002786 | GenePaint E15.5 Mouse Atlas | 2026-02-17 10:00:03 | 0 | |||||||
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Center for the Neural Basis of Cognition Resource Report Resource Website 10+ mentions |
Center for the Neural Basis of Cognition (RRID:SCR_002301) | data or information resource, portal, organization portal | CNBC is joint venture of University of Pittsburgh and Carnegie Mellon University. Our center leverages the strengths of the University of Pittsburgh in basic and clinical neuroscience and those of Carnegie Mellon in cognitive and computational neuroscience to support a coordinated cross-university research and educational program of international stature. In addition to our Ph.D. program in Neural Computation, we sponsor a graduate certificate program in cooperation with a wide variety of affiliated Ph.D. programs. | brain, cognition, cognitive abilities, development, disorders, human, human thought, learning, mind, multidisciplinary, neural activity, neural mechanisms, neurobasis, normal, training | has parent organization: Carnegie Mellon University; Pennsylvania; USA | nif-0000-00370 | SCR_002301 | CNBC | 2026-02-17 09:59:45 | 16 | |||||||||
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DPARSF Resource Report Resource Website 500+ mentions |
DPARSF (RRID:SCR_002372) | DPARSF | software application, data processing software, software resource, software toolkit | A MATLAB toolbox forpipeline data analysis of resting-state fMRI that is based on Statistical Parametric Mapping (SPM) and a plug-in software within DPABI. After the user arranges the Digital Imaging and Communications in Medicine (DICOM) files and click a few buttons to set parameters, DPARSF will then give all the preprocessed (slice timing, realign, normalize, smooth) data and results for functional connectivity, regional homogeneity, amplitude of low-frequency fluctuation (ALFF), fractional ALFF, degree centrality, voxel-mirrored homotopic connectivity (VMHC) results. DPARSF can also create a report for excluding subjects with excessive head motion and generate a set of pictures for easily checking the effect of normalization. In addition, users can also use DPARSF to extract time courses from regions of interest. DPARSF basic edition is very easy to use while DPARSF advanced edition (alias: DPARSFA) is much more flexible and powerful. DPARSFA can parallel the computation for each subject, and can be used to reorient images interactively or define regions of interest interactively. Users can skip or combine the processing steps in DPARSF advanced edition freely. | magnetic resonance, fmri, resting-state fmri, matlab, analysis, brain |
is used by: DPABI is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: Beijing Normal University; Beijing; China has parent organization: RFMRI.ORG |
PMID:20577591 | GNU General Public License | nlx_155735 | http://www.nitrc.org/projects/dparsf | SCR_002372 | Data Processing Assistant for Resting-State fMRI | 2026-02-17 09:59:55 | 564 | |||||
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Mindboggle Resource Report Resource Website 100+ mentions |
Mindboggle (RRID:SCR_002438) | Mindboggle | software application, data processing software, software resource | Mindboggle (http://mindboggle.info) is open source software for analyzing the shapes of brain structures from human MRI data. The following publication in PLoS Computational Biology documents and evaluates the software: Klein A, Ghosh SS, Bao FS, Giard J, Hame Y, Stavsky E, Lee N, Rossa B, Reuter M, Neto EC, Keshavan A. (2017) Mindboggling morphometry of human brains. PLoS Computational Biology 13(3): e1005350. doi:10.1371/journal.pcbi.1005350 | analyze, anatomic, atlas application, console (text based), labeling, python, magnetic resonance, os independent, region of interest, segmentation, brain, label, mri, anatomy, cerebral cortex, human brain, parcellation, morphometry, shape measures, cortical thickness, cortical depth, Laplace-Beltrami spectra, Zernike moments | is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) | NIMH MH084029-02 | Free, Available for download, Freely available | nlx_155813 | http://www.nitrc.org/projects/mindboggle | SCR_002438 | 2026-02-17 09:59:56 | 211 | ||||||
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SRI24 Atlas: Normal Adult Brain Anatomy Resource Report Resource Website 10+ mentions |
SRI24 Atlas: Normal Adult Brain Anatomy (RRID:SCR_002551) | SRI24 Atlas, SRI24, sri24-atlas | data or information resource, reference atlas, atlas | An MRI-based atlas of normal adult human brain anatomy, generated by template-free nonrigid registration from images of 24 normal control subjects. The atlas comprises T1, T2, and PD weighted structural MRI, tissue probability maps (GM, WM, CSF), maximum-likelihood tissue segmentation, DTI-based measures (FA, MD, longitudinal and transversal diffusivity), and two labels maps of cortical regions and subcortical structures. The atlas is provided at 1mm isotropic image resolution in Analyze, NIFTI, and Nrrd format. We are also providing an experimental packaging for use with SPM8. | analyze, model, magnetic resonance, nifti, nrrd, neuroanatomy, adult human, brain, mri, dti |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: Stanford Research Institute International |
Normal | NIAAA AA005965; NIAAA AA012888; NIAAA AA017347; NIAAA AA017168; NIA AG017919 |
PMID:20017133 | Free, Available for download, Freely available | nlx_155957 | SCR_002551 | sri24-atlas - MRI-based brain atlas of normal adult human brain anatomy, SRI24 Multi-Channel Atlas of Normal Adult Human Brain Structure | 2026-02-17 09:59:59 | 10 | ||||
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NeuroMab Resource Report Resource Website 1000+ mentions |
NeuroMab (RRID:SCR_003086) | NeuroMab | data or information resource, portal, organization portal | A national mouse monoclonal antibody generating resource for biochemical and immunohistochemical applications in mammalian brain. NeuroMabs are generated from mice immunized with synthetic and recombinant immunogens corresponding to components of the neuronal proteome as predicted from genomic and other large-scale cloning efforts. Comprehensive biochemical and immunohistochemical analyses of human, primate and non-primate mammalian brain are incorporated into the initial NeuroMab screening procedure. This yields a subset of mouse mAbs that are optimized for use in brain (i.e. NeuroMabs): for immunocytochemical-based imaging studies of protein localization in adult, developing and pathological brain samples, for biochemical analyses of subunit composition and post-translational modifications of native brain proteins, and for proteomic analyses of native brain protein networks. The NeuroMab facility was initially funded with a five-year U24 cooperative grant from NINDS and NIMH. The initial goal of the facility for this funding period is to generate a library of novel NeuroMabs against neuronal proteins, initially focusing on membrane proteins (receptors/channels/transporters), synaptic proteins, other neuronal signaling molecules, and proteins with established links to disease states. The scope of the facility was expanded with supplements from the NIH Blueprint for Neuroscience Research to include neurodevelopmental targets, the NIH Roadmap for Medical Research to include epigenetics targets, and NIH Office of Rare Diseases Research to include rare disease targets. These NeuroMabs will then be produced on a large scale and made available to the neuroscience research community on an inexpensive basis as tissue culture supernatants or purified immunoglobulin by Antibodies Inc. The UC Davis/NIH NeuroMab Facility makes NeuroMabs available directly to end users and is unable to accommodate sales to distributors for third party distribution. Note, NeuroMab antibodies are now offered through antibodiesinc. | antibody, brain, channel, disease-related protein, k channel subunit, mab, mammalian, membrane protein, monoclonal antibody, mouse, neuronal monoclonal antibody, neuronal protein, neuronal signaling molecule, reagent, receptor, research reagent, synaptic protein, transporter |
is used by: NIF Data Federation is listed by: OMICtools has parent organization: University of California at Davis; California; USA |
NINDS ; NIMH ; NIH Blueprint for Neuroscience Research ; NIH Roadmap for Medical Research ; Office of Rare Diseases Research ; Antibodies Inc. |
Free, Freely available | grid.482686.6, nif-0000-00175 | https://ror.org/00fyrp007 | SCR_003086 | UCDavis/NIH NeuroMab Facility, antibodies.inc, antibodiesinc.com, antibodiesinc | 2026-02-17 09:59:55 | 1810 | |||||
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GenePaint P7 Atlas Resource Report Resource Website |
GenePaint P7 Atlas (RRID:SCR_002787) | GenePaint Map P7 | data or information resource, reference atlas, atlas | Abbreviated reference atlas for the P56 mouse. All sections were nissl stained and digitized. To assist in the initial identification of sites of gene expression sites, maps of brains are available for E15.5, P7 and the adult. These maps depict the boundaries of major brain regions (cortex, thalamus, striatum, globus pallidus, ventral striatum, septum, basal forebrain, hippocampus, midbrain, pons, medulla, cerebellum) and also show the more prominent nerve tracts. Maps are most efficiently used by placing the window depicting the map of interest next to the gene expression image. Browsing between planes of sectioning is permitted thus allowing the most appropriate plane to be selected. The annotation of anatomical details such as brain nuclei is currently beyond the scope of the GenePaint database. Hence, such information on the anatomy of the brain and embryo should be obtained from published atlases of mouse anatomy (Kaufman, 1995; Paxinos and Franklin, 2001; Jacobowitz and Abbott, 1997; Schambra et al., 1992; Valverde1998). | gene, anatomical, anatomy, annotation, atlas, basal forebrain, brain, cerebellum, cortex, developmental, digitized, globus pallidus, hippocampus, map, medulla, midbrain, mouse, nerve, nissl staining protocol, nucleus, pons, region, septum, stained, striatum, thalamus, tract, ventral striatum, image, gene expression, young mouse |
is related to: GenePaint E15 Atlas is related to: GenePaint P56 Mouse Atlas is related to: GenePaint P56 Mouse Atlas has parent organization: GenePaint |
Free, Freely available | nif-0000-24449 | SCR_002787 | GenePaint Mouse Brain Map P7, GenePaint P7 Atlas | 2026-02-17 10:00:04 | 0 | |||||||
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Allen Institute for Brain Science Sleep Study Resource Report Resource Website 1+ mentions |
Allen Institute for Brain Science Sleep Study (RRID:SCR_002983) | Allen Sleep Study | data or information resource, data set, atlas | Collection of gene expression data in mouse brain for five different conditions of sleep and wakefulness to understand sleep deprivation and dynamic changes underlying sleep and wake cycles. Platform to generate cellular resolution expression data. | gene, expression, brain, data, image, mice, microarray, nissl, sleep, deprivation, wake, cycle, wakefulness, neuroanatomy |
is listed by: 3DVC has parent organization: Allen Institute for Brain Science |
Free, Public | nif-0000-00507 | SCR_002983 | Sleep Study | 2026-02-17 09:59:54 | 2 | |||||||
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Virtual Fly Brain Resource Report Resource Website 10+ mentions |
Virtual Fly Brain (RRID:SCR_004229) | VFB | data or information resource, neurons, expression, atlas | An interactive tool for neurobiologists to explore the detailed neuroanatomy, neuron connectivity and gene expression of the adult Drosophila melanogaster brain. | Drosophila, brain, neurons, innervation patterns, gene expression, transgene expression, phenotypes, neuroanatomy, neurobiology |
uses: Drosophila Gross Anatomy Ontology uses: Drosophila Development Ontology is related to: FlyBase is related to: Flycircuit is related to: Janelia Research has parent organization: University of Edinburgh; Scotland; United Kingdom has parent organization: University of Cambridge; Cambridge; United Kingdom has parent organization: European Bioinformatics Institute |
Wellcome Trust | PMID:22180411 | nlx_143644 | http://www.virtualflybrain.org/site/vfb_site/home.htm | SCR_004229 | VirtualFlyBrain.org, VFB, Virtual Fly Brain | 2026-02-17 10:00:12 | 45 | |||||
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UNC Human Brain Atlas Resource Report Resource Website 1+ mentions |
UNC Human Brain Atlas (RRID:SCR_002606) | UNC Human Brain Atlas | data or information resource, reference atlas, atlas | Human brain atlases for adult, pediatric and elderly populations, by iterative joint deformable registration of training datasets into a single unbiased average image. Atlases packages include T1-weighted images, tissue priors (WM,GM,CSF), lobar parcellation maps and subcortical structures. Current available atlases: * Adult atlas: Symmetric atlas generated from 50+ healthy adult subjects (20-59 year old). * UNC-MNI Pediatric 1-year-old atlas: Symmetric atlas generated from 104 1-year-old subjects, combining children at high familial risk of autism and controls. * Pediatric 4-year-old atlas: Symmetric atlas generated from 10 4-year-old healthy subjects. * Elderly atlas: Atlas generated from 27 healthy elderly subjects (60+ years old). Additional information and acknowledgment for their usage can be found by clicking on the release notes. | atlas data, magnetic resonance, nrrd, adult human, young human, pediatric, infant, late adult human, brain |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: INCF Software Center is related to: NeoSegPipeline has parent organization: University of North Carolina at Chapel Hill; North Carolina; USA |
Free, Available for download, Freely available | nlx_156009 | SCR_002606 | 2026-02-17 10:00:00 | 4 | ||||||||
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Centre for Vision Research Resource Report Resource Website |
Centre for Vision Research (RRID:SCR_002879) | data or information resource, portal, organization portal | The Centre for Vision Research focuses on interdisciplinary research into human and machine vision and visual processes, into vision's interactions with other senses and with motor and cognitive processes, and in applications such as visually-guided robotics or clinical diagnosis and treatment. The Centre for Vision Research includes the following major research themes: - Human Visual Performance - Visual Human-Computer Interaction, Graphics and Virtual Reality - Visual Psychophysics - Eye Movements and Hand-Eye Coordination - Computational Modeling and Computer Vision - Electrophysiology - Clinical and Developmental Studies - Brain Imaging | electrophysiology, engineering, eye, biology, brain, clinical, cognition, cognitive, computer, computer science, coordination, developmental, graphic, health science, human, imaging, interaction, kinesiology, machine, modeling, motor, performance, psychology, psychophysics, research, sense, technology, virtual, vision | has parent organization: York University; Ontario; Canada | Free, Freely available | nif-0000-25614 | SCR_002879 | CVR | 2026-02-17 10:00:06 | 0 | ||||||||
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BrainColor: Collaborative Open Labeling Online Resource Resource Report Resource Website 1+ mentions |
BrainColor: Collaborative Open Labeling Online Resource (RRID:SCR_006377) | BrainCOLOR | data or information resource, knowledge environment | This resource was created to host descriptions of protocols, definitions and rules for the reliable identification and localization of human brain anatomy and discussions of best practices in brain labeling. Project for manual anatomical labeling of human brain MRI data, and the visual presentation of labeled brain images. | atlas, curation, map, mapping, mri, image, brain, label, neurolabel, neuroanatomy |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: Neuromorphometrics has parent organization: Columbia University; New York; USA |
NIMH R43 MH084358; NIMH MH084029 |
Free, Available for download, Freely available | nif-0000-07727 | https://www.binarybottle.com/braincolor/ https://github.com/binarybottle/braincolor |
http://www.braincolor.org/ | SCR_006377 | Neurolabels, Collaborative Open Labeling Online Resource, Neuroanatomical Labeling Methods | 2026-02-17 10:01:06 | 3 | ||||
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BRAIN Initiative Resource Report Resource Website 10+ mentions |
BRAIN Initiative (RRID:SCR_006770) | NIH BRAIN Initiative | data or information resource, portal, organization portal | Project aimed at revolutionizing understanding of human brain, to show how individual cells and complex neural circuits interact, enable rapid progress in development of new technologies and data analysis tools to treat and prevent brain disorders. BRAIN Initiative encourages collaborations between neurobiologists and scientists from disciplines such as statistics, physics, mathematics, engineering, and computer and information sciences. Institutes and centers contributing to NIH BRAIN Initiative support those research efforts. | brain, connectomics, disorder, cell, neural, circuit, neurotechnology, data, repository, analysis |
uses: Single Cell Portal recommends: Human Neocortical Neurosolver recommends: Brain Gene Expression Analysis toolbox recommends: clusterExperiment recommends: BioWheel recommends: iELVis recommends: Mediation Analysis of Causality under Confounding recommends: MCell recommends: microMS recommends: MIIVsem recommends: MountainSort recommends: Myriads recommends: nelpy recommends: NetPyNE recommends: Neural Ideal recommends: NEURON recommends: Neuron Tools recommends: Neuroscience Gateway recommends: NUTMEG recommends: PetaVision recommends: PyNWB recommends: pyRayleighCuda recommends: ScanImage recommends: Scope recommends: Seizure-Waves recommends: Silver Lab Microscopy Software recommends: StimVision recommends: TReNA recommends: ALICE recommends: BioImage Suite recommends: EyeWire recommends: GIMME recommends: GMA recommends: Homer2 recommends: Brain Image Library recommends: Data Archive BRAIN Initiative recommends: OpenNeuro recommends: Brain Observatory Storage Service and Database (BossDB) recommends: 1000 Functional Connectomes Project recommends: FastProject recommends: Autopatcher recommends: cytoNet recommends: DiffuserCam recommends: gene Expression Analysis Resource recommends: NeMOarchive recommends: Distributed Archives for Neurophysiology Data Integration recommends: NIDA Data Share recommends: HED Tags lists: University of North Carolina Neuroscience Center and the BRAIN Initiative Viral Vector Core Facility is related to: Brain Image Library is related to: OpenNeuro is related to: Distributed Archives for Neurophysiology Data Integration is related to: NeMO Analytics is related to: Brainome portal is related to: CEMBA MethylC Seq Pipeline is related to: Seattle Alzheimer Disease Brain Cell Atlas is related to: EBRAINS has parent organization: National Institutes of Health is parent organization of: Data Archive BRAIN Initiative is parent organization of: OpenNeuro is parent organization of: Brain Observatory Storage Service and Database (BossDB) is parent organization of: Ecosystem for Multi-modal Brain-behavior Experimentation and Research has organization facet: 3D Developmental Mouse Brain Common Coordinate Framework |
Alzheimer's disease, Schizophrenia, Autism, Epilepsy, Traumatic brain injury | BRAIN Initiative | nlx_155554 | http://braininitiative.nih.gov/ http://www.whitehouse.gov/share/brain-initiative http://en.wikipedia.org/wiki/BRAIN_Initiative |
SCR_006770 | , Brain Research through Advancing Innovative Neurotechnologies Initiative, NIH Brain Research through Advancing Innovative Neurotechnologies Initiative | 2026-02-17 10:01:07 | 18 | |||||
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SenseLab Resource Report Resource Website 10+ mentions |
SenseLab (RRID:SCR_007276) | SenseLab | data or information resource, portal, database, organization portal | The SenseLab Project is a long-term effort to build integrated, multidisciplinary models of neurons and neural systems. It was founded in 1993 as part of the original Human Brain Project, which began the development of neuroinformatics tools in support of neuroscience research. It is now part of the Neuroscience Information Framework (NIF) and the International Neuroinformatics Coordinating Facility (INCF). The SenseLab project involves novel informatics approaches to constructing databases and database tools for collecting and analyzing neuroscience information, using the olfactory system as a model, with extension to other brain systems. SenseLab contains seven related databases that support experimental and theoretical research on the membrane properties: CellPropDB, NeuronDB, ModelDB, ORDB, OdorDB, OdorMapDB, BrainPharmA pilot Web portal that successfully integrates multidisciplinary neurocience data. | neuron, model, olfactory system, brain, disease, neuronal, olfactory |
is related to: Neuroscience Information Framework is related to: International Neuroinformatics Coordinating Facility has parent organization: Yale University; Connecticut; USA is parent organization of: SimToolDB |
Aging | Human Brain Project ; Multidisciplinary University Research Initiative ; NIMH ; NIA ; NICD ; NINDS ; NIDCD RO1 DC 009977 |
nif-0000-00017 | SCR_007276 | SenseLab Project, The SenseLab Project | 2026-02-17 10:01:13 | 41 | ||||||
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ICBM 152 Nonlinear atlases version 2009 Resource Report Resource Website 100+ mentions |
ICBM 152 Nonlinear atlases version 2009 (RRID:SCR_008796) | data or information resource, reference atlas, atlas | Unbiased standard magnetic resonance imaging template brain volume for normal population. These volumes were created using data from ICBM project. 6 different templates are available: * ICBM 2009a Nonlinear Symmetric - template which includes T1w,T2w,PDw modalities, also T2 relaxometry (T2 values calculated for each subject using single dual echo PD/T2 scan), and tissue probabilities maps. Also included lobe atlas used for ANIMAL+INSECT segmentation, brain mask, eye mask and face mask. Intensity inhomogeneity was performed using N3 version 1.10.1. * ICBM 2009a Nonlinear Asymmetric template - template which includes T1w,T2w,PDw modalities, and tissue probabilities maps. Intensity inhomogeneity was performed using N3 version 1.10.1. Also included brain mask, eye mask and face mask. * ICBM 2009b Nonlinear Symmetric - template which includes only T1w,T2w and PDw modalities. * ICBM 2009b Nonlinear Asymmetric - template which includes only T1w,T2w and PDw modalities. * ICBM 2009c Nonlinear Symmetric - template which includes T1w,T2w,PDw modalities, and tissue probabilities maps. Also included lobe atlas used for ANIMAL+INSECT segmentation, brain mask, eye mask and face mask. Intensity inhomogeneity was performed using N3 version 1.11. Sampling is different from 2009a template. * ICBM 2009c Nonlinear Asymmetric template - template which includes T1w,T2w,PDw modalities, and tissue probabilities maps. Intensity inhomogeneity was performed using N3 version 1.11 Also included brain mask, eye mask and face mask.Sampling is different from 2009a template. All templates are describing the same anatomy, but sampling is different. Also, different versions of N3 algorithm produces slightly different tissue probability maps. Tools for using these atlases can be found in the Software section. Viewing the multiple atlas volumes online requires Java browser support. You may also download the templates - see licensing information. | magnetic resonance imaging, brain, human, normal |
is related to: MINC/Atlases is related to: bic-mni-models has parent organization: McConnell Brain Imaging Center |
nlx_144297 | SCR_008796 | , BIC ICBM 152 Nonlinear atlases version 2009 | 2026-02-17 10:01:24 | 243 | |||||||||
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NIHPD Objective 1 atlases (4.5 - 18.5y) Resource Report Resource Website 10+ mentions |
NIHPD Objective 1 atlases (4.5 - 18.5y) (RRID:SCR_008794) | NIHPD Objective 1 atlases (4.518.5y) | data or information resource, reference atlas, atlas | An unbiased standard magnetic resonance imaging template brain volume for pediatric data from the 4.5 to 18.5y age range. These volumes were created using data from 324 children enrolled in the NIH-funded MRI study of normal brain development (Almli et al., 2007, Evans and Group 2006). Tools for using these atlases can be found in the Software section. To view the atlases online, click on the appropriate JIV2 link in the Download section. You can download templates constructed for different age ranges. For each age range you will get an average T1w, T2w, PDw maps normalized between 0 and 100 and tissue probability maps, with values between 0 and 1. Also each age range includes a binary brain mask. | pediatric, human, mri, brain, child, young human | has parent organization: McConnell Brain Imaging Center | Normal brain development, Aging | PMID:20656036 | nlx_144295 | SCR_008794 | BIC NIHPD Objective 1 atlases (4.518.5y), McConnell Brain Imaging Center NIHPD Objective 1 atlases (4.518.5y) | 2026-02-17 10:01:25 | 11 | ||||||
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UBC National Core for Neuroethics Resource Report Resource Website |
UBC National Core for Neuroethics (RRID:SCR_008063) | data or information resource, portal, job resource, organization portal | It is an interdisciplinary research group dedicated to tackling the ethical, legal, policy and social implications of frontier technological developments in the neurosciences. Our objective is to align innovations in the brain sciences with societal, cultural and individual human values through high impact research, education and outreach. The Core''s major research projects are focused on high impact, high visibility areas including the use of drugs and devices for neuroenhancement, ethics in neurodegenerative disease and regenerative medicine research, international and cross-cultural challenges in brain research, neuroimaging in the private sector, and the ethics of personalized medicine, among others. Members of the Core also lead initiatives aside from their research projects. Sponsors: This Core is supported by the University of Brititsh Columbia. | drug, education, ethic, ethical, brain, brain science, human, implication, legal, neurodegenerative disease, neuroenhancement, neuroethics, neuroscience, outreach, policy, regenerative medicine, social, technological development, neuroimaging | has parent organization: University of British Columbia; British Columbia; Canada | nif-0000-10478 | SCR_008063 | University of British Columbia, UBC Neuroethics, National Core for Neuroethics | 2026-02-17 10:01:18 | 0 | |||||||||
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NYU Institute for Pediatric Neuroscience Sample Resource Report Resource Website |
NYU Institute for Pediatric Neuroscience Sample (RRID:SCR_010458) | NYU IPN Sample, NYUIQ | data or information resource, data set | Datasets including a collection of scans from 49 psychiatrically evaluated neurotypical adults, ranging in age from 6 to 55 years old, with age, gender and intelligence quotient (IQ) information provided. Future releases will include more comprehensive phenotypic information, and child and adolescent datasets, as well as individuals from clinical populations. The following data are released for every participant: * At least one 6-minute resting state fMRI scan (R-fMRI) * * One high-resolution T1-weighted mprage, defaced to protect patient confidentiality * Two 64-direction diffusion tensor imaging scans * Demographic information (age, gender) and IQ-measures (Verbal, Performance, and Composite; Weschler Abbreviated Scale of Intelligence - WASI) * Most participants have 2 R-fMRI scans, collected less than 1 hour apart in the same scanning session. Rest_1 is always collected first. | adult human, young human, intelligence quotient, child, adolescent, clinical, resting state fmri, t1-weighted, mprage, diffusion tensor imaging, fsiq, viq, piq, neuroimaging, brain, image collection |
has parent organization: 1000 Functional Connectomes Project has parent organization: New York University; New York; USA |
Neurotypical, Aging | Autism Speaks ; Stavros Niarchos Foundation ; Leon Levy Foundation ; Phyllis Green and Randolph Cwen ; NIMH R01MH083246 |
Creative Commons Attribution-NonCommercial License | nlx_157644 | SCR_010458 | NYU Phyllis Green and Randolph Cwen Institute for Pediatric Neuroscience Sample | 2026-02-17 10:01:46 | 0 | |||||
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Virginia Tech Carilion Research Institute Sample Resource Report Resource Website |
Virginia Tech Carilion Research Institute Sample (RRID:SCR_010459) | VTCRI Sample | data or information resource, data set | Dataset including a T1 weighted anatomical image as well as two 10-minute resting state scans acquired during the same session from 25 psychiatrically screened healthy adults (community sample) ranging in age from 18 to 65 years old, with age, sex, education level, and ethnicity provided. Some subjects also returned several weeks after the first scan for a second scanning session. The number of days between scan sessions, for subjects that had two sessions, is indicated in the demographics spreadsheet. The study scanning protocol included: # 13 sec localizer # 4 minute 38 second T1 weighted anatomical # Subject given instructions for resting state scan #1 # 10 minute 4 second resting state scan #1 # Subject given instructions for resting state scan #2 # 10 minute 4 second resting state scan #2 Scanning was performed on one of three different 3T Siemens TIM TRIOs at the Human Neuroimaging Lab at Baylor College of Medicine in Houston, Texas. All scans were acquired using the standard Siemen''s TIM 12-channel head matrix. The resting state scans were acquired with a custom sequence that is a slight modification to the standard Siemen''s EPI sequence that supports real-time fMRI. Images were acquired slightly oblique to minimize dephasing in the orbito-frontal cortex. Detailed scanning parameters are included in separate .pdf files. | resting state fmri, t1-weighted, mprage, adult human, early adult human, late adult human, middle adult human, image collection, neuroimaging, brain, demographic, fmri, aging |
has parent organization: 1000 Functional Connectomes Project has parent organization: Virginia Polytechnic Institute and State University; Virginia; USA |
Healthy | Creative Commons Attribution-NonCommercial License | nlx_157645 | SCR_010459 | Virginia Tech CRI Sample | 2026-02-17 10:01:53 | 0 | ||||||
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Network-based Prediction of Human Tissue-specific Metabolism Resource Report Resource Website 1+ mentions |
Network-based Prediction of Human Tissue-specific Metabolism (RRID:SCR_007392) | data or information resource, data set | THIS RESOURCE IS NO LONGER IN SERVICE, documented August 23, 2016. Network visualizations in which the expression and predicted flux data are projected over the global human network. These network visualizations are accessible through the supplemental website using the publicly available Cytoscape software (Cline, Smoot et al. 2007). Since many high degree nodes exist in the network, special layouts are required to produce network visualizations that are readily interpretable. To this end we produced network visualizations in which hub nodes are repeated multiple times and hence layouts with a small number of edge crossings can be generated. Contains entries for brain compartments and brain pathways. | molecular neuroanatomy resource, brain, pathway, tissue-specific metabolism, human, network-based prediction, cytoscape 2.5, tissue-specific metabolic behavior, network visualization, high degree nodes, hub nodes, currency metabolites, cellular-compartments, cellular compartment, metabolite, cytoplasm, extracellular, lysosome, mitochondrion, nucleus, endoplasmic, peroxisome, metabolic flux |
is related to: Cytoscape has parent organization: Tel Aviv University; Ramat Aviv; Israel |
THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-00431 | SCR_007392 | Network-based Prediction of Human Tissue-specific Metabolism | 2026-02-17 10:01:06 | 1 |
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