Searching the RRID Resource Information Network
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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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University of North Dakota School of Medicine and Health Sciences Imaging Core Facility Resource Report Resource Website 1+ mentions |
University of North Dakota School of Medicine and Health Sciences Imaging Core Facility (RRID:SCR_017733) | service resource, core facility, access service resource | Provides advanced instrumentation for researchers interested in investigating biological processes at cellular, sub cellular and molecular level.Instrumentation include Confocal Microscope Systems :Zeiss LSM-510 Meta Confocal Microscope, Olympus FV1000 MPE Basic Multiphoton Microscope;Brightfield/Fluorescence: Nikon Eclipse TE300 (inverted) Fluorescent Microscope, Nikon Eclipse 80i (upright) Fluorescent Microscope, Leica Thunder Imager; TIRF Systems:Olympus TIRF Microscope; Transmission Electron Microscopy:Hitachi 7500 TEM, RCM MTX Ultramicrotomes;Scanning Electron Microscopy:Hitachi 4700 Field Emission SEM, Denton Desk II Sputter and Turbo-sputter Coaters.Light and electron microscopic facilities, complete with ancillary support equipment, are located in close proximity to each other within suite of rooms housed in medical school. | Light, electron, microscopy, imaging | NIGMS P20 GM113123; NIGMS U54 GM128729; UNDSMHS fund |
Open | ABRF_184 | SCR_017733 | Imaging Core | 2026-02-16 09:49:18 | 1 | ||||||||
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ProFunc Resource Report Resource Website 50+ mentions |
ProFunc (RRID:SCR_004450) | ProFunc | production service resource, service resource, data analysis service, analysis service resource | The ProFunc server had been developed to help identify the likely biochemical function of a protein from its three-dimensional structure. It uses both sequence- and structure-based methods including fold matching, residue conservation, surface cleft analysis, and functional 3D templates, to identify both the protein''''s likely active site and possible homologues in the PDB. Often, where one method fails to provide any functional insight another may be more helpful. You can submit your own structure, analyze an existing PDB entry, or retrieve the results of a previously submitted run. The files are usually stored for about 6 months before being deleted. However, they are stored on a partition that is not backed up; so, in principle, they could disappear at any time. | gold standard |
is related to: PDBsum has parent organization: European Bioinformatics Institute |
DOE contract W-31-109-Eng-38; NIGMS GM62414; European Union FP6 contract LHSG-CT-2003-503265 |
PMID:15980588 PMID:16019027 |
nlx_44430 | SCR_004450 | ProFunc - prediction of protein function from 3D structure, ProFunc: Analysis of a protein''''s 3D structure to help identify its likely biochemical function | 2026-02-16 09:46:22 | 63 | ||||||
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Subcellular Location Image Finder Resource Report Resource Website 1+ mentions |
Subcellular Location Image Finder (RRID:SCR_006723) | SLIF | data or information resource, database, image | SLIF finds fluorescence microscope images in on-line journal articles, and indexes them according to cell line, proteins visualized, and resolution. Images can be accessed via the SLIF Web database. SLIF takes on-line papers and scans them for figures that contain fluorescence microscope images (FMIs). Figures typically contain multiple FMIs, to SLIF must segment these images into individual FMIs. When the FMI images are extracted, annotations for the images (for instance, names of proteins and cell-lines) are also extracted from the accompanying caption text. Protein annotation are also used to link to external databases, such as the Gene Ontology DB. The more detailed process includes: segmentation of images into panels; panel classification, to find FMIs; segmentation of the caption, to find which portions of the caption apply to which panels; text-based entity extraction; matching of extracted entities to database entries; extraction of panel labels from text and figures; and alignment of the text segments to the panels. Extracted FMIs are processed to find subcellular location features (SLFs), and the resulting analyzed, annotated figures are stored in a database, which is accessible via SQL queries. | fluorescence, annotation, cell, journal, microscope, protein, subcellular, image, cell line, fluorescence microscope, information retrieval, data mining |
is listed by: Biositemaps has parent organization: Carnegie Mellon University; Pennsylvania; USA |
Commonwealth of Pennsylvania Tobacco Settlement Fund ; National Center for Integrative Biomedical Informatics ; NIGMS R01 GM078622; NIDA U54 DA021519 |
PMID:17990497 | nif-0000-10308 | SCR_006723 | SLIF - Subcellular Location Image Finder | 2026-02-16 09:46:47 | 1 | ||||||
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Wyoming University Jenkins Microscopy Core Facility Resource Report Resource Website |
Wyoming University Jenkins Microscopy Core Facility (RRID:SCR_017758) | service resource, core facility, access service resource | Core to assist researchers and students in their imaging needs of fluorescence and electron microscopy and to increase use of microscopes in science education. Consultation, training or touring facility is also available by appointment. | Microscopy, imaging, fluorescence, electron, consultation, training, service, core | NIGMS P20 GM121310; University of Wyoming Neuroscience COBRE and Neuroscience Core Center grant ; UW Sensory Biology COBRE grant |
Restricted | ABRF_268 | SCR_017758 | Jenkins Microscopy Facility | 2026-02-16 09:49:18 | 0 | ||||||||
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University of Nevada at Reno Nevada Proteomics Center Core Facility Resource Report Resource Website 1+ mentions |
University of Nevada at Reno Nevada Proteomics Center Core Facility (RRID:SCR_017761) | service resource, core facility, access service resource | Core offers mass spectral proteomic analysis. Assists with qualitative and quantitative characterization of proteins in biological matrices such as plasma/serum, tissue, cell lines and other biological material to gain understanding of physiological pathways, molecular interactions and regulatory signaling. | Mass, spectral, proteomic, analysis, qualitative, quantitative, protein, plasma, serum, tissue, cell, line, physiological, pathway, interaction, signaling, stury, service, core |
is listed by: ABRF CoreMarketplace has parent organization: University of Nevada at Reno; Nevada; USA |
NIGMS P20 GM103440 | Open | SCR_011043, SciEx_9701, ABRF_281 | https://coremarketplace.org/?FacilityID=281&citation=1 | SCR_017761 | Mick Hitchcock, Ph.D. Nevada Proteomics Center | 2026-02-16 09:49:18 | 6 | ||||||
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University of Delaware BioImaging Center Core Facility Resource Report Resource Website 1+ mentions |
University of Delaware BioImaging Center Core Facility (RRID:SCR_017814) | service resource, core facility, access service resource | Microscopy facility that houses equipment including confocal microscopes: LSM780 confocal microscope (Located at CBBI),LSM880 confocal microscope (Located at DBI 117),electron microscopes and their accessory instrumentation:Thermo Scientific Apreo VS SEM microscope,Hitachi S-4700, Leica EM ACE600 and Tousimis Autosamdri-815B,CX7 high content analysis system. Our staff has technical expertise across different microscopy platforms and methodologies. | Microscopy, bioimaging, confocal, electron, microscope, analysis, service, core |
is listed by: ABRF CoreMarketplace has parent organization: University of Delaware; Delaware; USA |
NIGMS P20 GM103446; NSF IIA 1301765; State of Delaware ; NCRR S10 RR027273; NIH Office of the Director S10 OD016361; NIH Office of the Director S10 OD025165; NIGMS P20 GM113125 |
Open | ABRF_537 | https://coremarketplace.org/?FacilityID=537&citation=1 | SCR_017814 | Delaware University BioImaging Center Core Facility, University of Delaware Bio-Imaging Center | 2026-02-16 09:49:19 | 1 | ||||||
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University of New England COBRE Histology and Imaging Core Facility Resource Report Resource Website |
University of New England COBRE Histology and Imaging Core Facility (RRID:SCR_017885) | service resource, core facility, access service resource | Core provides access to expertise, training and specialized instrumentation related to tissue processing, sectioning, staining, immunohistochemistry and microscopy. Offers services and training related to image analysis and image analysis software to guide investigators in choosing best methods for presenting their data.Services include Trimming of wet tissues,Tissue processing into paraffin, OCT and paraffin embedding, Sectioning of paraffin-embedded/frozen tissues, Routine and special histochemical staining, Immunohistochemistry/Immunofluorescence, Antibody optimization, Brightfield/ widefield/ confocal microscopy, Image capture and image analysis.Core has cryostats, microtomes and microscopes available for reservation. | Instrumentation, tissue, processing, sectioning, staining, immunochemistry, microscopy, training, expertise, image, analysis, data, trimming, wet, tissue, processing, paraffin, embedding, immunofluorescence, antibody, optimization, microscopy, cryostat, microtome, service, core | is listed by: ABRF CoreMarketplace | NIGMS P20 GM103643 | Open | ABRF_748 | https://coremarketplace.org/?FacilityID=748&citation=1 | SCR_017885 | Histology and Imaging Core | 2026-02-16 09:49:22 | 0 | ||||||
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Northwestern University Proteomics Core Facility Resource Report Resource Website 1+ mentions |
Northwestern University Proteomics Core Facility (RRID:SCR_017945) | service resource, core facility, access service resource | Core offers multiple types of experiments from simple protein identification to protein quantitation. Performs traditional bottom-up proteomics, where proteins are digested with enzyme prior to analysis and intact, top-down proteomics analyses. Services include proteins identification after in-gel or in-solution digestion, top-down mass spectrometry to preserve post-translationally modified forms of proteins present in vivo by measuring them intact, IP-MS Pulldown,BioID service to identify target of biotin ligase that has been tagged onto their protein via traditional cloning methods,Untargeted Quantitative Peptide Proteomics,Targeted Quantitative Peptide Proteomics,Epiproteomic Histone Modification Panel A,Epiproteomic Histone Modification Panel B,Untargeted Metabolomics,Phosphoproteomics,PTM Scan,ChIP-MS. | Protein, indentification, quantitation, proteomics, analysis, enzyme, digestion, mass, spectrometry, peptide, targeted, epiproteomic, histone, modification, untargeted, phosphoproteomics, PTM Scan, ChIP-MS, service, core, ABRF |
is listed by: ABRF CoreMarketplace is related to: USEDit has parent organization: Northwestern University; Illinois; USA |
NCI P30 CA060553; NIH Office of the Director S10 OD025194; NIGMS P41 GM108569 |
Open | SCR_017880, ABRF_944 | https://coremarketplace.org/?FacilityID=944 | https://coremarketplace.org/?FacilityID=738 | SCR_017945 | Northwestern Proteomics, Northwestern University Proteomics Center of Excellence Core Facility | 2026-02-16 09:49:22 | 5 | |||||
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Mount Desert Island Biological Laboratory Light Microscopy Core Facility Resource Report Resource Website 1+ mentions |
Mount Desert Island Biological Laboratory Light Microscopy Core Facility (RRID:SCR_019166) | LMF MDIBL | service resource, core facility, access service resource | Core provides professional scientific expertise in light microscopy. Offers access to hardware and software as well as expert guidance at any step of imaging project, from experimental design to image analysis.Comprises eight microscope systems including two laser scanning confocal microscopes including one Olympus inverted confocal microscope system (FV1000) and one Zeiss inverted confocal microscope system (LSM-980) equipped with Airy scan 2 for super resolution and 2-photon technology for in-vivo deep imaging with temperature controlled chamber. One spinning disk confocal including Nikon inverted spinning disk microscope system with incubation chamber (Eclipse Ti with Yokogawa disk CSU-W1), two Zeiss widefield microscopes for brightfield and epifluorescence illumination (Zeiss Apotome and Zeiss Colibri), three macroscopes systems to observe large samples or complete model organisms in brightfield and epifluorescence including one Olympus stereomicroscope system (MVX10) and two Zeiss stereomicroscope systems (SteREO Discovery V12), fully automated and one AxioZoom V16 , fully automated with ApoTome attachment. | USEDit, light microscopy, imaging project, image analysis, experimental design, ABRF |
is listed by: ABRF CoreMarketplace has parent organization: Mount Desert Island Biological Laboratory |
NIGMS GM103423 | ABRF_172 | https://coremarketplace.org/?FacilityID=172 | SCR_019166 | MDIBL Light Microscopy Facility, Light Microscopy Facility MDIBL | 2026-02-16 09:49:40 | 8 | ||||||
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Marshall University School of Medicine Genomics Core Facility Resource Report Resource Website 1+ mentions |
Marshall University School of Medicine Genomics Core Facility (RRID:SCR_018885) | service resource, core facility, access service resource | Core provides services including high throughput next generation sequencing (NGS) to support whole genome, whole exome, RNA-Seq, single cell RNA-Seq, microbiome and global chromatin and methylation studies, biostatistical and bioinformatic support for NGS projects, access to DNA/RNA sequence analysis software, automated Sanger DNA sequencing, genotyping and RNA/DNA quality assessment, access to shared instrumentation such as plate readers, real time thermal cyclers, Agilent Bioanalyzers, fluorimeters, and spectrophotometers. | USEDit, genomics, next generation sequencing, biostatistical and bioinformatic support, RNA-Seq, global chromatin and methylation studies, ABRF |
is listed by: ABRF CoreMarketplace is related to: USEDit has parent organization: Marshall University Joan C. Edwards School of Medicine; West Virginia; USA |
NIGMS P20GM103434; NIGMS 1P20GM121299; NIGMS 2U54GM104942 |
ABRF_163 | https://coremarketplace.org/?FacilityID=163 | SCR_018885 | Marshall University Genomics Core Facility, MU Genomics Core Facility, Marshall University Genomics and Bioinformatics Core Facilities | 2026-02-16 09:49:33 | 6 | |||||||
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Dartmouth Genomics and Molecular Biology Shared Resource (GMBSR) Resource Report Resource Website 10+ mentions |
Dartmouth Genomics and Molecular Biology Shared Resource (GMBSR) (RRID:SCR_021293) | service resource, core facility, access service resource | Genomics Section provides services and instrumentation that enable DNA/RNA extraction and quality control, next-generation Illumina and Nanopore sequencing, epigenetic profiling, and microarray analysis on a whole-genome scale, from the level organisms to single cells. Molecular Biology Section provides DNA fragment analysis qPCR, Sanger sequencing and NanoString Technology. | USEDit, ABRF, DNA fragment analysis qPCR, Sanger sequencing, NanoString Technology, |
is listed by: ABRF CoreMarketplace has parent organization: Dartmouth College; New Hampshire; USA |
NCI 5P30CA023108; NIGMS P20GM130454; NIH Office of the Director 1S10OD030242; NIH Office of the Director S10OD025235 |
ABRF_995 | https://coremarketplace.org/?FacilityID=995 | SCR_021293 | Molecular Biology Resource, Molecular Biology Shared Resource | 2026-02-16 09:49:59 | 37 | |||||||
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University of Vermont Integrative Genomics Resource Core Facility Resource Report Resource Website 1+ mentions |
University of Vermont Integrative Genomics Resource Core Facility (RRID:SCR_021775) | VIGR | service resource, core facility, access service resource | Core provides services for Experimental Design, Metagenomics, Comparative Expression Analyses, Variant Analyses, and Systems Biology. Overarching umbrella encompassing four distinct shared resource facility arms: DNA Analysis,Microarray,Massively Parallel Sequencing Facilities,Bioinformatics Shared Resource. | USEDit, ABRF, DNA Analysis, Microarray, Massively Parallel Sequencing Facilities, Bioinformatics Shared Resource |
is listed by: ABRF CoreMarketplace has parent organization: University of Vermont; Vermont; USA |
NIGMS GM103449 | open | ABRF_245 | https://coremarketplace.org/?FacilityID=245 | SCR_021775 | Vermont Integrative Genomics Resource | 2026-02-16 09:50:06 | 2 | |||||
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MAP Database Guide for Membrane Protein Solubilization Resource Report Resource Website 1+ mentions |
MAP Database Guide for Membrane Protein Solubilization (RRID:SCR_025656) | database, data or information resource | Open access web app that allows users to search for optimal condition for extraction of membrane proteins into membrane active polymers which allows for retention of native membrane environment around target protein. | optimal condition for extraction of membrane proteins, membrane active polymers, retention of native membrane environment, target protein, | has parent organization: Yale University; Connecticut; USA | NIGMS RM1GM149406; NIGMS R01GM141192; NIGMS R35GM147095; Michael J. Fox Foundation |
PMID:38405833 | Free, Freely available | SCR_025656 | Membrane Active Polymers Database Guide for Membrane Protein Solubilization | 2026-02-16 09:51:09 | 1 | |||||||
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SpaGCN Resource Report Resource Website |
SpaGCN (RRID:SCR_025978) | software application, software resource, source code | Software graph convolutional network to integrate gene expression and histology to identify spatial domains and spatially variable genes. SpaGCN integrates information from gene. | Integrating gene expression and histology, graph convolutional network, identify spatial domains, identify spatially variable genes, | NIGMS R01GM125301; NEI R01EY030192; NEI R01EY031209; NHLBI R01HL113147; NHLBI R01HL150359; NIA P01AG066597 |
PMID:34711970 | Free, Available for download, Freely available | SCR_025978 | 2026-02-16 09:51:03 | 0 | |||||||||
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LinDA Resource Report Resource Website 1+ mentions |
LinDA (RRID:SCR_025966) | software application, data processing software, data analysis software, source code, software resource | Software linear models for differential abundance analysis of microbiome compositional data. Used to tackle compositional effects in differential abundance analysis. It fits linear regression models on centered log2-ratio transformed data, identifies bias term due to transformation and compositional effect, and corrects bias using mode of regression coefficients. It could fit mixed-effect models. | differential abundance analysis, microbiome compositional data, differential abundance analysis, | NIGMS R01GM144351; NSF ; Mayo Clinic Center for Individualized Medicine |
PMID:35421994 | SCR_025966 | Linear models for differential abundance analysis of microbiome compositional data (LinDA), Linear models for differential abundance analysis of microbiome compositional data | 2026-02-16 09:51:03 | 1 | |||||||||
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Conditional AutoRegressive Deconvolution Resource Report Resource Website 1+ mentions |
Conditional AutoRegressive Deconvolution (RRID:SCR_026310) | CARD | software toolkit, source code, software resource | Software R package for spatial transcriptomics. Deconvolution method that combines cell-type-specific expression information from single-cell RNA sequencing (scRNA-seq) with correlation in cell-type composition across tissue locations. | Deconvolution method, spatial transcriptomics, cell-type-specific expression, single-cell RNA sequencing, cell-type composition across tissue locations, | NIGMS R01GM126553; NHGRI R01HG011883; NIGMS R01GM144960 |
PMID:35501392 | Free, Available for download, Freely available | SCR_026310 | , CARD: Conditional AutoRegressive Deconvolution, Conditional autoregressive-based deconvolution | 2026-02-16 09:51:08 | 3 | |||||||
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EndoMap Resource Report Resource Website 1+ mentions |
EndoMap (RRID:SCR_026690) | database, data or information resource | Structural interactome viewer. Interactive database of endosomal protein-protein interactions identified by cross-linking mass spectrometry and modeled by AlphaFold multimer. Structural protein interactome of human early endosomes. | Structural protein interactome, structural interactome viewer, endosomal protein-protein interactions, human early endosomes, | Aligning Science Across Parkinson ; NINDS R01NS110395; NIGMS RO1 GM132129; Michael J Fox Foundation |
DOI:10.1101/2025.02.07.636106 | Free, Freely available | SCR_026690 | EndoMAP.v1 | 2026-02-16 09:51:13 | 2 | ||||||||
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MeTPeak Resource Report Resource Website 10+ mentions |
MeTPeak (RRID:SCR_026533) | software toolkit, source code, software resource | Software package for finding the location of m6A sites in MeRIP-seq data. | finding location of m6A sites, MeRIP-seq data | NCI P30CA54174; NCI U54 CA113001; NIGMS R01 GM113245; Natural Science Foundation of China ; NSF |
PMID:27307641 | Free, Available for download, Freely available | SCR_026533 | 2026-02-16 09:51:11 | 10 | |||||||||
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iPOP Resource Report Resource Website 10+ mentions |
iPOP (RRID:SCR_008991) | iPOP | data set, data or information resource | Data set generated by personal omics profiling of Dr. Michael Snyder at Stanford University. It combines genomic, transcriptomic, proteomic, metabolomic, and autoantibody profiles from a single individual over a 14 month period. The analysis revealed various medical risks, including type II diabetes. It also uncovered extensive, dynamic changes in diverse molecular components and biological pathways across healthy and diseased conditions. | genomics, proteomics, transcriptional profiling, saliva, blood, maternal data, metabolomics, personalized medicine, adult human, genetics, transcriptome, male | has parent organization: Stanford University; Stanford; California | Healthy | Breetwor Family Foundation ; Korber Foundation ; Fundacion Marcelino Botin ; Fundacion Lilly ; NLM T15-LM007033; NIGMS R24-GM61374; NHLBI T32 HL094274; NHLBI KO8 HL083914; NIH New Investigator DP2 award OD004613; Spanish Ministry of Science and Innovation Projects ; Spanish Ministry of Science and Innovation Projects ; European Union FP7 Genica ; European Union FP7 TELOMARKER ; European Research Council Advanced Grant ; |
PMID:22424236 | Free for personal, Non-exclusive, Non-transferable, Non-commercial access., Please cite. | nlx_152492 | SCR_008991 | Snyderome, Integrated Personal Omics Profiling | 2026-02-16 09:47:19 | 12 | ||||
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National Resource for Biomedical Accelerator Mass Spectrometry Resource Report Resource Website |
National Resource for Biomedical Accelerator Mass Spectrometry (RRID:SCR_009006) | Resource for Biomedical AMS | service resource, access service resource, biomedical technology research center, training resource | Biomedical technology research center that develops and refines accelerator mass spectrometry methods and instrumentation for the precise, quantitative and cost-effective measurement of the effects of drugs and toxicants on humans at safe doses. It facilitates the use of accelerator mass spectrometry in biomedical research and provides training and access for researchers. | systems biology technology center, accelerator mass spectrometry, radioisotope, isotope | has parent organization: Lawrence Livermore National Laboratory | NCRR ; NIGMS |
nlx_152682 | SCR_009006 | 2026-02-16 09:47:19 | 0 |
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