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Plasmid Name Proper Citation Insert Name Organism Bacterial Resistance Defining Citation Comments Vector Backbone Description Relevant Mutation Record Last Update Mentions Count
R6K_BAD_mCherry-GFP_ChInt--
 
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RRID:Addgene_187396 GFP, mCherry Synthetic Other PMID: This plasmid requires a pir+ strain for growth and transformation. It will be distributed in MFDpir E. coli. MFDpir strain is auxotrophic for DAP (diaminopimelic acid), so it must be added to the media to grow and extract the plasmid (0.3 mM working concentration). Vector Backbone:R6Kgamma; Vector Types:Bacterial Expression; Bacterial Resistance:Other 2023-09-15 01:08:42 0
R6K_tac_GFPmut3_ChInt
 
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RRID:Addgene_187381 GFPmut3 Synthetic Other PMID: This plasmid requires a pir+ strain for growth and transformation. It will be distributed in MFDpir E. coli. MFDpir strain is auxotrophic for DAP (diaminopimelic acid), so it must be added to the media to grow and extract the plasmid (0.3 mM working concentration). Vector Backbone:R6Kgamma; Vector Types:Bacterial Expression; Bacterial Resistance:Other 2023-09-15 01:08:41 0
R6K_tac_dGFPmut3_ChInt
 
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RRID:Addgene_187388 dGFPmut3_AAV Synthetic Other PMID: This plasmid requires a pir+ strain for growth and transformation. It will be distributed in MFDpir E. coli. MFDpir strain is auxotrophic for DAP (diaminopimelic acid), so it must be added to the media to grow and extract the plasmid (0.3 mM working concentration). Vector Backbone:R6Kgamma; Vector Types:Bacterial Expression; Bacterial Resistance:Other C-terminal AAV tail 2023-09-15 01:08:41 0
pNR-DEST
 
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RRID:Addgene_90101 Other PMID: Backbone Size:10902; Vector Backbone:pPtPBR1; Vector Types:Other, Gateway Destination vector for protein expression in diatoms; Bacterial Resistance:Other 2023-05-10 01:06:39 0
p49202-DEST
 
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RRID:Addgene_90100 Other PMID: Backbone Size:11457; Vector Backbone:pPtPBR1; Vector Types:Other, Gateway Destination vector for protein expression in diatoms; Bacterial Resistance:Other 2023-05-10 01:06:39 0
pH4-DEST
 
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RRID:Addgene_90099 Other PMID: Backbone Size:10591; Vector Backbone:pPtPBR1; Vector Types:Other, Gateway Destination vector for protein expression in diatoms; Bacterial Resistance:Other 2023-05-10 01:06:39 0
KJ740(DE3)
 
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RRID:Addgene_179486 none Other Other PMID:35639414 λDE3 [lacI, lacUV5-T7 gene 1, ind1, sam7, nin5] F- araC14 fhuA31 lacY1 tsx-78 ΔompF480 zcb-222::Tn10 rfbC1 mgl-51 ΔompC178 rpsL136(StrR) xylA5 mtl-1 thiE1 KJ740(DE3) is a λDE3 derivative of the OmpC- & OmpF-deficient strain KJ740 that was described in Ingham C, Buechner M, Adler J, 1990, J Bacteriol 172:3577-3583. Due to the presence of the lambda (DE3) lysogen, KJ740(DE3) is compatible with expression from the T7 promoter. The (DE3) lysogen of the parent strain KJ740 was made by Debra T. Hansen using the λDE3 Lysogenization Kit 538 (EMD Millipore #69734-3). The parent strain KJ740 was obtained from the Yale E. coli Genetic Stock Center (CGSC) as strain number 12151. In contrast to BL21 derivative strains, KJ740(DE3) is not deficient in the proteases Lon and OmpT. The presence of (DE3) was confirmed by PCR by Felicia M. Craciunescu. PCR primers that may be used to verify the presence of the (DE3) lysogen: These primer pairs are expected to generate a PCR product from each of 3 genes within the (DE3) sequence, GenBank accession no. AM946981.2. There are two primer pairs per gene, therefore 6 possible PCR products. The presence of the PCR product of the expected size indicates the presence of the (DE3) lysogen. The PCR reactions will also be run on the negative control non-(DE3) parent strain, KJ740, which is expected to not generate these PCR product sizes. gene A F1 GACTACATCCGTGAGGTGAATGTGG gene A R1 GATGACGCAGGCATTATGCTCGCAG Product size = 645 bp gene A F2 CCTTTCACATCTGGACAGCGTACAG gene A R2 GTTGCTGCACCATCCTCTTCCTGC Product size = 904 bp gene H F1 GACATCTGGAATCTGCGCAAGGATGA gene H R1 CTGCAGGATTTTCCCGTCTTTCAGTG Product size = 291 bp gene H F2 GTGCGCTGGCGTATGCCTGGTATC gene H R2 CTGTTCCGTGGCTTCCCGTTCTGC Product size = 1388 bp gene J F1 CTTTACCTTCGGTGTACAGGCACTGGTG gene J R1 GTCCTGCACGAACGTCAGCGTCTG Product size = 748 bp gene J F2 CAGACAGGTTGAAACCAGCACGCGTTATC gene J R2 GTTTGCCTTCCTCCGTGTCCTCCATG Product size = 407 bp Please visit https://www.biorxiv.org/content/10.1101/2021.08.26.457821v2 for bioRxiv preprint. Vector Backbone:N/A; Vector Types:; Bacterial Resistance:Other 2024-02-11 12:03:46 0
pBC118
 
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RRID:Addgene_202279 bc145 Synthetic Other PMID:38503974 This plasmid can be transformed into E. coli BW29427 supplemented with 50 µg/mL of diaminopimelic acid (DAP) or any Pir1 strain. Please visit https://doi.org/10.1101/2023.04.20.537712 for bioRxiv preprint. Vector Backbone:pBCC096; Vector Types:Bacterial Expression; Bacterial Resistance:Other 2024-04-10 01:05:33 0
pBC155
 
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RRID:Addgene_202274 bc182 Synthetic Other PMID:38503974 This plasmid can be transformed into E. coli BW29427 supplemented with 50 µg/mL of diaminopimelic acid (DAP) or any Pir1 strain. Please visit https://doi.org/10.1101/2023.04.20.537712 for bioRxiv preprint. Vector Backbone:pBCC106; Vector Types:Bacterial Expression; Bacterial Resistance:Other 2024-04-10 01:05:33 0
pBC114
 
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RRID:Addgene_202276 bc141 Synthetic Other PMID:38503974 This plasmid can be transformed into E. coli BW29427 supplemented with 50 µg/mL of diaminopimelic acid (DAP) or any Pir1 strain. Please visit https://doi.org/10.1101/2023.04.20.537712 for bioRxiv preprint. Vector Backbone:pBCC091; Vector Types:Bacterial Expression; Bacterial Resistance:Other 2024-04-10 01:05:33 0
pBC117
 
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RRID:Addgene_202278 bc144 Synthetic Other PMID:38503974 This plasmid can be transformed into E. coli BW29427 supplemented with 50 µg/mL of diaminopimelic acid (DAP) or any Pir1 strain. Please visit https://doi.org/10.1101/2023.04.20.537712 for bioRxiv preprint. Vector Backbone:pBCC096; Vector Types:Bacterial Expression; Bacterial Resistance:Other 2024-04-10 01:05:33 0
pBC115
 
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RRID:Addgene_202277 bc142 Synthetic Other PMID:38503974 This plasmid can be transformed into E. coli BW29427 supplemented with 50 µg/mL of diaminopimelic acid (DAP) or any Pir1 strain. Please visit https://doi.org/10.1101/2023.04.20.537712 for bioRxiv preprint. Vector Backbone:pBCC091; Vector Types:Bacterial Expression; Bacterial Resistance:Other 2024-04-10 01:05:33 0
pBC071
 
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RRID:Addgene_202235 bc098 Synthetic Other PMID:38503974 This plasmid can be transformed into E. coli BW29427 supplemented with 50 µg/mL of diaminopimelic acid (DAP) or any Pir1 strain. Please visit https://doi.org/10.1101/2023.04.20.537712 for bioRxiv preprint. Vector Backbone:pBCC088; Vector Types:Bacterial Expression; Bacterial Resistance:Other 2024-04-10 01:05:32 0
pBC079
 
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RRID:Addgene_202238 bc106 Synthetic Other PMID:38503974 This plasmid can be transformed into E. coli BW29427 supplemented with 50 µg/mL of diaminopimelic acid (DAP) or any Pir1 strain. Please visit https://doi.org/10.1101/2023.04.20.537712 for bioRxiv preprint. Vector Backbone:pBCC090; Vector Types:Bacterial Expression; Bacterial Resistance:Other 2024-04-10 01:05:32 0
pBC073
 
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RRID:Addgene_202237 bc100 Synthetic Other PMID:38503974 This plasmid can be transformed into E. coli BW29427 supplemented with 50 µg/mL of diaminopimelic acid (DAP) or any Pir1 strain. Please visit https://doi.org/10.1101/2023.04.20.537712 for bioRxiv preprint. Vector Backbone:pBCC088; Vector Types:Bacterial Expression; Bacterial Resistance:Other 2024-04-10 01:05:32 0
pBC080
 
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RRID:Addgene_202239 bc107 Synthetic Other PMID:38503974 This plasmid can be transformed into E. coli BW29427 supplemented with 50 µg/mL of diaminopimelic acid (DAP) or any Pir1 strain. Please visit https://doi.org/10.1101/2023.04.20.537712 for bioRxiv preprint. Vector Backbone:pBCC090; Vector Types:Bacterial Expression; Bacterial Resistance:Other 2024-04-10 01:05:32 0
pBC069
 
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RRID:Addgene_202233 bc096 Synthetic Other PMID:38503974 This plasmid can be transformed into E. coli BW29427 supplemented with 50 µg/mL of diaminopimelic acid (DAP) or any Pir1 strain. Please visit https://doi.org/10.1101/2023.04.20.537712 for bioRxiv preprint. Vector Backbone:pBCC088; Vector Types:Bacterial Expression; Bacterial Resistance:Other 2024-04-10 01:05:32 0
pBC108
 
Resource Report
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RRID:Addgene_202247 bc135 Synthetic Other PMID:38503974 This plasmid can be transformed into E. coli BW29427 supplemented with 50 µg/mL of diaminopimelic acid (DAP) or any Pir1 strain. Please visit https://doi.org/10.1101/2023.04.20.537712 for bioRxiv preprint. Vector Backbone:pBCC086; Vector Types:Bacterial Expression; Bacterial Resistance:Other 2024-04-10 01:05:32 0
pBC107
 
Resource Report
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RRID:Addgene_202246 bc134 Synthetic Other PMID:38503974 This plasmid can be transformed into E. coli BW29427 supplemented with 50 µg/mL of diaminopimelic acid (DAP) or any Pir1 strain. Please visit https://doi.org/10.1101/2023.04.20.537712 for bioRxiv preprint. Vector Backbone:pBCC086; Vector Types:Bacterial Expression; Bacterial Resistance:Other 2024-04-10 01:05:32 0
pBC160
 
Resource Report
Resource Website
RRID:Addgene_202248 bc187 Synthetic Other PMID:38503974 This plasmid can be transformed into E. coli BW29427 supplemented with 50 µg/mL of diaminopimelic acid (DAP) or any Pir1 strain. Please visit https://doi.org/10.1101/2023.04.20.537712 for bioRxiv preprint. Vector Backbone:pBCC087; Vector Types:Bacterial Expression; Bacterial Resistance:Other 2024-04-10 01:05:32 0

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