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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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Mouse Brain Architecture Project Resource Report Resource Website 1+ mentions |
Mouse Brain Architecture Project (RRID:SCR_004683) | data or information resource, atlas, reference atlas, d spatial image | An atlas project whose goal is to enerate brainwide maps of inter-regional neural connectivity that specify the inputs and outputs of every brain region, at a "mesoscopic" level of analysis. A 3D injection viewer is used to view the mouse brain. To determine the outputs of a brain region, anterograde tracers are used which are taken up by neurons locally ("the input"), then transported actively down the axons to the "output regions." The whole brain is then sliced thinly, and each slice is digitally imaged. These 2-D images are reconstructed in 3D. The majority of the resulting 3-D brain image is unlabeled. Only the injected region and its output regions have tracer in them, allowing for identification of this small fraction of the connectivity map. This procedure is repeated identically, to account for individual variability. To determine the inputs to the same brain region as above, a retrograde tracer is injected in the same stereotaxic location ("the input"), and the process is repeated. In order to accumulate data from different mice (each of whom has a slightly different brain shape and size), 3-D spatial normalization is performed using registration algorithms. These gigapixel images of whole-brain sections can be zoomed to show individual neurons and their processes, providing a "virtual microscope." Each sampled brain is represented in about 500 images, each image showing an optical section through a 20 micron-thick slice of brain tissue. A multi-resolution viewer permits users to journey through each brain, following the pathways taken through three-dimensional brain space by tracer-labeled neuronal pathways. A key point is that at the mid-range "mesoscopic" scale, the team expects to assemble a picture of connections that are stereotypical and probably genetically determined in a species-specific manner. By dividing the volume of a hemisphere of the mouse brain into 250 equidistant, predefined grid-points, and administering four different kinds of tracer injections at each grid point -- in different animals of the same sex and age a complete wiring diagram that will be stitched together in "shotgun" fashion from the full dataset. | atlas, brain, brain architecture, connectivity, mouse brain architecture, neuroanatomy |
is related to: Brain Architecture Project has parent organization: Brain Architecture Project |
NIH Office of the Director ; NIMH RC1MH088659; NIMH R01MH087988 |
Fully accessible to the neuroscience community as well as interested members of the general public, Acknowledgement requested | nlx_146201 | http://www.brainarchitecture.org | http://www.brainarchitecture.org/mouse/about | SCR_004683 | MBA Project, Mouse Brain Architecture | 2026-02-14 02:01:00 | 5 | |||||
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Mutant Mouse Resource and Research Center Resource Report Resource Website 1000+ mentions |
Mutant Mouse Resource and Research Center (RRID:SCR_002953) | MMRRC | biomaterial supply resource, organism supplier, material resource | National public repository system for mutant mice. Archives and distributes scientifically valuable spontaneous and induced mutant mouse strains and ES cell lines for use by biomedical research community. Includes breeding/distribution facilities and information coordinating center. Mice strains are cryopreserved, unless live colony must be established. Live mice are supplied from production colony, from colony recovered from cryopreservation, or via micro-injection of cell line into host blastocysts. MMRRC member facilities also develop technologies to improve handling of mutant mice, including advances in assisted reproductive techniques, cryobiology, genetic analysis, phenotyping and infectious disease diagnostics. | RIN, Resource Information Network, stem cell, mouse strain, embryonic stem cell, embryonic stem cell line, cryopreserved, mutant mouse strain, mutant, transgenic, database, FASEB list, RRID Community Authority |
is used by: Integrated Animals is listed by: One Mind Biospecimen Bank Listing is listed by: Biositemaps is listed by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases is listed by: NIDDK Research Resources is listed by: NIDDK Information Network (dkNET) is listed by: Resource Information Network is affiliated with: MUGA is affiliated with: MegaMUGA is related to: Federation of International Mouse Resources is related to: Mouse Mutagenesis Center for Developmental Defects is related to: MGI strains has parent organization: Jackson Laboratory has parent organization: University of California at Davis; California; USA has parent organization: University of Missouri; Missouri; USA has parent organization: University of North Carolina at Chapel Hill; North Carolina; USA has parent organization: National Institutes of Health is parent organization of: Deltagen and Lexicon Knockout Mice and Phenotypic Data Resource provides: Knockout Mouse Project Repository has organization facet: University of California at Davis Mutant Mouse Resource and Research Center has organization facet: Mutant Mouse Resource and Research Center - University of North Carolina has organization facet: Mutant Mouse Resource and Research Center - University of Missouri has organization facet: Mutant Mouse Resource and Research Center - Jackson Laboratory |
NIH Office of the Director U42 OD012210; NIH Office of the Director U42 OD010918; NIH Office of the Director U42 OD010924; NIH Office of the Director U42 OD010921; NCRR RR026296; NIH Blueprint for Neuroscience Research |
Restricted | nif-0000-00045 | SCR_002953 | Mutant Mouse Regional Resource Center | 2026-02-14 02:00:36 | 1025 | ||||||
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Sal-Site Resource Report Resource Website 50+ mentions |
Sal-Site (RRID:SCR_002850) | Sal-Site | data analysis service, organism-related portal, image collection, portal, analysis service resource, data or information resource, production service resource, service resource, topical portal, database | Portal that supports Ambystoma-related research and educational efforts. It is composed of several resources: Salamander Genome Project, Ambystoma EST Database, Ambystoma Gene Collection, Ambystoma Map and Marker Collection, Ambystoma Genetic Stock Center, and Ambystoma Research Coordination Network. | gene, genomic, expressed sequence tag, blast, model organism, genome, salamander, animal model, genetic map, genetic marker, gene expression, limb regeneration, microarray, quantitative-pcr, rna-seq, nanostring, husbandry, embryo, limb, mutant, strain, neural, olfaction, phentotype, regeneration, renal, retina, sequence, vision, human, chicken, xenopus tropicalis, FASEB list | has parent organization: University of Kentucky; Kentucky; USA | NSF OB0242833; NSF DBI0443496; NCRR R24 RR016344; NIH Office of the Director R24 OD010435 |
PMID:16359543 | Free, Freely available | nif-0000-25309 | https://orip.nih.gov/comparative-medicine/programs/vertebrate-models | SCR_002850 | Ambystoma Resources for Model Amphibians Database | 2026-02-14 02:00:33 | 92 | ||||
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Special Mouse Strains Resource Resource Report Resource Website |
Special Mouse Strains Resource (RRID:SCR_002885) | SMSR | biomaterial supply resource, organism supplier, material resource | Resource of special strains of mice that are valuable tools for genetic analysis of complex diseases. They include panels of recombinant inbred (RI) and chromosome substitution (CS) strains. | strain panel, frozen, cryopreserved, recombinant inbred mouse, chromosome substitution mouse, consomic strain, gene, disease, strain |
is listed by: One Mind Biospecimen Bank Listing is related to: One Mind Biospecimen Bank Listing is related to: Mouse Phenome Database (MPD) has parent organization: Jackson Laboratory |
Recombinant inbred mouse, Chromosome substitution mouse, Consomic strain | NCRR P40 RR016049; NIH Office of the Director P40 OD011102 |
THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-25593 | SCR_002885 | Special Mouse Strains Resource (SMSR) | 2026-02-14 02:00:34 | 0 | |||||
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LUMPY Resource Report Resource Website 100+ mentions |
LUMPY (RRID:SCR_003253) | data processing software, data analysis software, software application, software resource, simulation software, standalone software | Software package as probabilistic framework for structural variant discovery. Capable of integrating any number of SV detection signals including those generated from read alignments or prior evidence. Simplified wrapper for standard analyses, LUMPY Express, can also be executed. | probabilistic, framework, structural, variant, discovery |
is listed by: OMICtools is listed by: Debian has parent organization: University of Virginia; Virginia; USA |
NHGRI R01 HG006693; NIH Office of the Director DP2 OD006493; Burroughs Wellcome Fund Career Award |
PMID:24970577 | Free, Available for download, Freely available | OMICS_04674 | https://sources.debian.org/src/lumpy-sv/ | SCR_003253 | lumpy-sv, LUMPY Express | 2026-02-14 02:00:24 | 447 | |||||
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BrainInfo Resource Report Resource Website 10+ mentions |
BrainInfo (RRID:SCR_003142) | portal, data or information resource, atlas, narrative resource, database, topical portal, standard specification | Portal to neuroanatomical information on the Web that helps you identify structures in the brain and provides a variety of information about each structure by porting you to the best of 1500 web pages at 100 other neuroscience sites. BrainInfo consists of three basic components: NeuroNames, a developing database of definitions of neuroanatomic structures in four species, their most common acronyms and their names in eight languages; NeuroMaps, a digital atlas system based on 3-D canonical stereotaxic atlases of rhesus macaque and mouse brains and programs that enable one to map data to standard surface and cross-sectional views of the brains for presentation and publication; and the NeuroMaps precursor: Template Atlas of the Primate Brain, a 2-D stereotaxic atlas of the longtailed (fascicularis) macaque brain that shows the locations of some 250 architectonic areas of macaque cortex. The NeuroMaps atlases will soon include a number of overlays showing the locations of cortical areas and other neuroscientific data in the standard frameworks of the macaque and mouse atlases. Viewers are encouraged to use NeuroNames as a stable source of unique standard terms and acronyms for brain structures in publications, illustrations and indexing systems; to use templates extracted from the NeuroMaps macaque and mouse brain atlases for presenting neuroscientific information in image format; and to use the Template Atlas for warping to MRIs or PET scans of the macaque brain to estimate the stereotaxic locations of structures. | brain, neuroanatomy |
is used by: NIF Data Federation is listed by: Biositemaps is related to: INIA19 Primate Brain Atlas has parent organization: University of Washington; Seattle; USA has parent organization: University of California at San Diego; California; USA |
The Human Brain Project ; NIBIB ; NLM LM/OD-06243; NIH Office of the Director LM/OD-06243; NIMH MHO69259; NCRR RR-00166 |
PMID:21789500 PMID:21163300 PMID:18368361 PMID:15055392 |
Free, Freely available | nif-0000-00019 | SCR_003142 | Brain Info | 2026-02-14 02:00:30 | 16 | ||||||
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National Gnotobiotic Rodent Resource Center Resource Report Resource Website 10+ mentions |
National Gnotobiotic Rodent Resource Center (RRID:SCR_002768) | biomaterial supply resource, organism supplier, material resource | Material resource that provides germ-free and selectively colonized rodents to requesting investigators. Germ-free rodents are axenic, with no detectible bacteria, yeast, molds, parasites or viruses (except retroviruses). | embryo, axenic, bacteria, germ, mold, mouse, parasite, rat, retrovirus, rodent, specie, strain, virus, yeast | has parent organization: University of North Carolina at Chapel Hill; North Carolina; USA | NIH Office of the Director P40 OD010995 | Free | nif-0000-24375 | SCR_002768 | NGRRC | 2026-02-14 02:00:26 | 10 | |||||||
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Biological General Repository for Interaction Datasets (BioGRID) Resource Report Resource Website 1000+ mentions |
Biological General Repository for Interaction Datasets (BioGRID) (RRID:SCR_007393) | BioGRID | data or information resource, database | Curated protein-protein and genetic interaction repository of raw protein and genetic interactions from major model organism species, with data compiled through comprehensive curation efforts. | budding yeast, fission yeast, protein, gene, protein interaction, genetic interaction, model organism, interaction, dataset, gene annotation, phenotype, orthologous interaction, yeast, cellular interaction network, physical interaction, protein-peptide, protein-rna, protein-protein interaction, genetics, publication, raw protein, genetic interaction, web service, pathway, network, biology, gene mapping, statistics, bio.tools, FASEB list |
is used by: NIF Data Federation is recommended by: National Library of Medicine is recommended by: NIDDK Information Network (dkNET) is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases is listed by: re3data.org is listed by: OMICtools is listed by: DataCite is listed by: NIH Data Sharing Repositories is listed by: bio.tools is listed by: Debian is related to: TissueNet - The Database of Human Tissue Protein-Protein Interactions is related to: Pathway Commons is related to: Cytoscape is related to: Interaction Reference Index is related to: ConsensusPathDB is related to: FlyMine is related to: IMEx - The International Molecular Exchange Consortium is related to: Integrated Molecular Interaction Database is related to: PSICQUIC Registry is related to: PSI-MI is related to: NIH Data Sharing Repositories is related to: Agile Protein Interactomes DataServer is related to: Integrated Manually Extracted Annotation has parent organization: Princeton University; New Jersey; USA has parent organization: University of Edinburgh; Scotland; United Kingdom has parent organization: University of Montreal; Quebec; Canada works with: IMEx - The International Molecular Exchange Consortium |
NCRR R01 RR024031; NHGRI HG02223; Canadian Institutes of Health Research ; BBSRC ; NIH Office of the Director R24 OD011194 |
PMID:23203989 PMID:21071413 PMID:16381927 PMID:12620108 |
Free, Freely available | nif-0000-00432, r3d100010350, OMICS_01901, biotools:the_grid | https://orip.nih.gov/comparative-medicine/programs/genetic-biological-and-information-resources https://bio.tools/the_grid https://doi.org/10.17616/R34C7G |
SCR_007393 | , BioGRID, Biological General Repository for Interaction Datasets | 2026-02-14 02:01:30 | 2554 | ||||
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University of Pittsburgh Department of Neuroscience Resource Report Resource Website |
University of Pittsburgh Department of Neuroscience (RRID:SCR_007985) | data or information resource, organization portal, portal, department portal | The Department of Neuroscience in the School of Arts and Sciences at the University of Pittsburgh provides outstanding undergraduate and graduate education with innovative independent and collaborative research, a well-rounded curriculum, and a seminar series by the world''s most renowned leaders in the field of neuroscience. The Department has become successful and prominent based on the determination, energy, imagination, and skills of its faculty as investigators and as mentors, and on the support of the institution and the funding agencies. Consequently, morale is high and so is our optimism that we will continue to develop and maintain a world-class department. | NIH Office of the Director P40 OD010996 | nif-0000-04000 | SCR_007985 | U Pitt, UPitt Department of Neuroscience, UPitt Neuroscience | 2026-02-14 02:01:31 | 0 | ||||||||||
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Tulane National Biomedical Research Center Resource Report Resource Website 500+ mentions |
Tulane National Biomedical Research Center (RRID:SCR_008167) | TNPRC | portal, data or information resource, organization portal, disease-related portal, topical portal | Center focused on understanding human health problems, including infectious diseases that require the use of nonhuman primates to develop diagnostics, therapeutics and preventive strategies. Primary research interests include developing vaccines, treatments and diagnostic tools for infectious diseases such as AIDS, tuberculosis, CMV, COVID-19, Lyme disease, and malaria. TNPRC has both biosafety level 2 and biosafety level 3 laboratories facilities to accommodate various research needs, and is the only National Primate Research Center with Regional Biosafety Laboratory. | NPRC, NPRC Consortium, ORIP, primate research, |
is listed by: National Primate Research Center Consortium has parent organization: Tulane University; Louisiana; USA |
NIH Office of the Director P51 OD011104; NIH Office of the Director U42 OD010568; NIH Office of the Director U42 OD024282 |
nif-0000-24360 | https://orip.nih.gov/comparative-medicine/programs/vertebrate-models | SCR_008167 | Tulane National Primate Research Center | 2026-02-14 02:01:34 | 853 | ||||||
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Caribbean Primate Research Center Resource Report Resource Website 1+ mentions |
Caribbean Primate Research Center (RRID:SCR_008345) | CPRC | biomaterial supply resource, organism supplier, material resource | Center for the study of non-human primates. Its mission is the study and use of non-human primates as models for studies of social and biological interactions and for the discovery of methods of prevention, diagnosis and treatment of diseases that afflict humans. Through the stewardship of three unique facilities—Cayo Santiago Field Station, Sabana Seca Field Station, and the Laboratory of Primate Morphology supports a diverse range of research programs that enhance understanding of primate biology and behavior, with direct applications in biomedical and translational research. | NPRC, NPRC Consortium, ORIP, environment, genetic, antigen, behavior, biological, biomedical, birth, blood, conception, dengue, disease, human, immune system, laboratory, macaca mulatta, macaque, model, monkey, morphology, movement, pathology, primate, reproductive biology, researcher, rh, rhesus, scientific, serological, siv, skeletal system, vaccine, variation, virology |
is listed by: National Primate Research Center Consortium has parent organization: University of Puerto Rico; Puerto Rico; USA |
NIH Office of the Director P40 OD012217 | nif-0000-25870 | https://orip.nih.gov/comparative-medicine/programs/vertebrate-models | SCR_008345 | Caribbean Primate Research Center Program | 2026-02-14 02:01:32 | 1 | ||||||
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Xiphophorus Genetic Stock Center Resource Report Resource Website 100+ mentions |
Xiphophorus Genetic Stock Center (RRID:SCR_008340) | biomaterial supply resource, organism supplier, material resource | Supplier of xiphophorus (platyfish or swordtails) from pedigreed parental lines, representing variety of species. In addition to supplying strains and providing consultation on husbandry and genetic questions, the XGSC produces custom interspecies hybrids (both first generation F1, and backcross hybrid generation BC1) for a variety of projects. | RIN, Resource Information Network, est, fish, cryopreservation, microsatellite, swordtail, RRID Community Authority |
is used by: Integrated Animals is listed by: Resource Information Network has parent organization: Texas State University; Texas; USA |
NCI P01 CA75137; NIH Office of the Director R24 OD011120; University of Texas MD Anderson Center |
nif-0000-24971 | https://orip.nih.gov/comparative-medicine/programs/vertebrate-models | SCR_008340 | XGSC | 2026-02-14 02:01:39 | 109 | |||||||
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Southwest National Primate Research Center Resource Report Resource Website 50+ mentions |
Southwest National Primate Research Center (RRID:SCR_008292) | data or information resource, portal, topical portal | Center that supports studies of nonhuman primate models of human diseases, including common chronic diseases and infectious diseases and the effects that genetics and the environment have on physiological processes and disease susceptibility. SNPRC encourages the use of its resources by investigators from the national and international biomedical research communities. | NPRC, NPRC Consortium, ORIP, environment, genetic, aids, animal, baboon, biomedical, breeding, chimpanzee, chronic, colony, disease, human, infectious, macaques, marmoset, nonhuman, physiological, population, primate, process, research, rhesus, specie, study, susceptibility, veterinary, spf, specific, pathogen, free |
is listed by: National Primate Research Center Consortium has parent organization: Texas Biomedical Research Institute; Texas; USA |
NIH Office of the Director P51 OD011133; NIH Office of the Director U42 OD010442 |
nif-0000-24359 | https://orip.nih.gov/comparative-medicine/programs/vertebrate-models | SCR_008292 | SNPRC | 2026-02-14 02:01:31 | 85 | |||||||
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National Xenopus Resource Resource Report Resource Website 100+ mentions |
National Xenopus Resource (RRID:SCR_013731) | NXR | biomaterial supply resource, organism supplier, material resource | National stock center for X. laevis and X. tropicalis and training center for advanced technologies (e.g. husbandry, cell biology, imaging, genetics, transgenesis, genomics). | RIN, Resource Information Network, Xenopus, laevis, tropicalis, RRID Community Authority |
is used by: Integrated Animals is listed by: Resource Information Network |
NIH Office of the Director P40 OD010997; NIH Office of the Director R24 OD030008 |
https://orip.nih.gov/comparative-medicine/programs/vertebrate-models | SCR_013731 | 2026-02-14 02:02:34 | 308 | ||||||||
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Bloomington Drosophila Stock Center Resource Report Resource Website 1000+ mentions |
Bloomington Drosophila Stock Center (RRID:SCR_006457) | BDSC | biomaterial supply resource, organism supplier, material resource | Collects, maintains and distributes Drosophila melanogaster strains for research. Emphasis is placed on genetic tools that are useful to a broad range of investigations. These include basic stocks of flies used in genetic analysis such as marker, balancer, mapping, and transposon-tagging strains; mutant alleles of identified genes, including a large set of transposable element insertion alleles; defined sets of deficiencies and a variety of other chromosomal aberrations; engineered lines for somatic and germline clonal analysis; GAL4 and UAS lines for targeted gene expression; enhancer trap and lacZ-reporter strains with defined expression patterns for marking tissues; and a collection of transposon-induced lethal mutations. | RIN, Resource Information Network, disease model, deficiency, deletion, transposon insertion, sequenced strain, duplication, protein trap, human disease model, transposon, fly, gene, genetic, genetic analysis, database, deficiency, germline, insertion, invertebrate, scientist, somatic, stock, transposon, mutation, genetic construct, FASEB list, RRID Community Authority |
is used by: Integrated Animals is listed by: One Mind Biospecimen Bank Listing is listed by: Resource Information Network is related to: One Mind Biospecimen Bank Listing is related to: NIF Data Federation has parent organization: Indiana University; Indiana; USA |
Human disease model | NIH Office of the Director P40 OD018537 | nif-0000-00241 | https://orip.nih.gov/comparative-medicine/programs/invertebrate-models | http://flystocks.bio.indiana.edu/bloomhome.htm | SCR_006457 | Bloomington Drosophila Stock Center at Indiana University | 2026-02-14 02:01:10 | 3164 | ||||
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Wake Forest Vervet Research Colony Resource Report Resource Website 10+ mentions |
Wake Forest Vervet Research Colony (RRID:SCR_006678) | VRC, WFSM VRC | material storage repository, storage service resource, biospecimen repository, material resource, service resource, biomaterial supply resource, tissue bank | NIH funded national research resource to provide biomedical research community with access to US born, known age, pedigreed, genomically sequenced, pathogen free Caribbean origin vervet monkeys also known as African green monkeys. Provides access to animals, extensive multisystem clinical phenotyping, sample and data repositories, expertise in use of nonhuman primate models for translational studies, serves as platform for training veterinarians and other professionals in biomedical research, husbandry, clinical care, and the colony behavioral management. | blood, tissue, chlorocebus, aethiops, sabaeus, animal, model, green, monkey |
is listed by: One Mind Biospecimen Bank Listing has parent organization: Wake Forest Primate Center |
NIH Office of the Director OD010965 | nif-0000-25872, nlx_146208, SCR_012849 | SCR_006678 | Wake Forest Vervet Research Colony, Wake Forest School of Medicine Vervet Research Colony, Vervet Research Colony | 2026-02-14 02:01:20 | 10 | |||||||
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Zebrafish International Resource Center Resource Report Resource Website 100+ mentions |
Zebrafish International Resource Center (RRID:SCR_005065) | ZIRC | biomaterial supply resource, organism supplier, material resource | Center that supplies access to wild-type, mutant, and transgenic zebrafish lines, EST's/cDNAs, antibodies and fish health services. ZIRC Health Services include diagnostic pathology testing for zebrafish and other small laboratory fish species. | RIN, Resource Information Network, zebrafish line, expressed sequence tag, cdna, fish, antibody, pathology, research, embryo, adult, RRID Community Authority |
is used by: Integrated Animals is listed by: One Mind Biospecimen Bank Listing is listed by: Resource Information Network is related to: One Mind Biospecimen Bank Listing is related to: ZMP is related to: NIF Data Federation is related to: Zebrafish Information Network (ZFIN) is related to: zfishbook has parent organization: University of Oregon; Oregon; USA |
NICHD HD12546; NCRR RR12546; W.M. Keck Foundation ; NIH Office of the Director P40 OD011021 |
Restricted | nif-0000-00242 | http://zebrafish.org/home/guide.php | SCR_005065 | Zebrafish International Resource Center | 2026-02-14 02:04:31 | 445 | |||||
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National Resource for Aplysia Resource Report Resource Website 10+ mentions |
National Resource for Aplysia (RRID:SCR_008361) | National Resource for Aplysia | biomaterial supply resource, organism supplier, material resource | Center where Aplysia californica are cultured and raised for research purposes. Aplysia from the facility serve in research on genomics, human brain function, toxicology for developmental studies, natural products, chemistry for isolation of novel anti-tumor and antibacterial compounds, in the study of transport by digestive tissues and have potential for use in studies of substance addiction and nerve senescence and regeneration. | disease, genomics, aplysia californica, research, brain | has parent organization: University of Miami; Florida; USA | NIH Office of the Director P40 OD010952; NCRR |
nif-0000-25472 | http://aplysia.miami.edu/ | SCR_008361 | 2026-02-14 02:04:48 | 14 | |||||||
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Database of Immune Cell Epigenomes Resource Report Resource Website 50+ mentions |
Database of Immune Cell Epigenomes (RRID:SCR_018259) | DICE | web service, data or information resource, data access protocol, software resource, database | Database of Immune Cell Expression, Expression quantitative trait loci (eQTLs) and Epigenomics. Collection of identified cis-eQTLs for 12,254 unique genes, which represent 61% of all protein-coding genes expressed in human cell types. Datasets to help reveal effects of disease risk associated genetic polymorphisms on specific immune cell types, providing mechanistic insights into how they might influence pathogenesis. | Data set, immune cell expression, expression quantitative trait loci, epigenomics, data, cis-eQLC, gene, protein coding gene, human cell type, genetic polymorphism disease, immune cell, pathogenesis | has parent organization: La Jolla Institute for Immunology | William K. Bowes Jr Foundation ; NIAID R24 AI108564; NCRR S10 RR027366; NIH Office of the Director S10 OD016262 |
PMID:30449622 | Free, Freely available | SCR_018259 | Database of Immune Cell Expression, Expression quantitative trait loci (eQTLs) and Epigenomics | 2026-02-14 02:03:35 | 59 | ||||||
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Monocle3 Resource Report Resource Website 100+ mentions |
Monocle3 (RRID:SCR_018685) | data processing software, data analysis software, software toolkit, software application, software resource | Software analysis toolkit for single cell RNA-seq. Used for single cell RNA-Seq experiments. Unsupervised algorithm that increases temporal resolution of transcriptome dynamics using single-cell RNA-Seq data collected at multiple time points. | Data analysis, singel cell RNAseq data, single cell RNAseq experiment, transcriptome dynamics | has parent organization: University of Washington; Seattle; USA | NIH Office of the Director DP2 OD00667; NIGMS P01 GM099117; NIH Office of the Director DP2 0D008514; NHGRI P50 HG006193; Single Cell Genomics initiative |
PMID:24658644 | Free, Available for download, Freely available | https://github.com/cole-trapnell-lab/monocle3 | SCR_018685 | Monocle, Monocle 3 | 2026-02-14 02:03:23 | 270 |
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