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https://edspace.american.edu/openbehavior/project/openfeeder/
Project related to studying reward and feeding behavior. Provides open source automatic feeding system that can be customized for food types from seeds to pellets.System integrates plexiglass tubes, Arduino Uno, motor driver, and piezo sensor to reliably deliver accurate amounts of food, and can also be built using 3D printed parts.
Proper citation: OpenFeeder (RRID:SCR_021552) Copy
Project related to auditory behavioral task data collection.Provided high throughput operant conditioning in mouse homecage system was developed by University of Maryland,College Park, scientists.Automated system for training up to hundreds of mice in auditory behavioral task features custom Matlab GUI running on desktop which connects to Raspberry Pi to administer auditory stimuli from USB soundcard and collects auditory data as well as licking data from water spout with commercially available capacitive sensors. Parts list and build instructions are readily available from paper and associated GitHub repository.
Proper citation: ToneBox (RRID:SCR_021548) Copy
https://github.com/cMadan/stl-toolbox
Software toolbox for visualizing and quantifying movement from pre-recorded videos.Used for summarizing animal movement data as single image ( spectral time lapse algorithm) as well as automate analysis of animal movement data.
Proper citation: Quantifying Animal Movement from Pre-recorded Videos (RRID:SCR_021515) Copy
https://github.com/ikodvanj/ratPASTA/
Software package for processing and visualising data from startle experiments in rodents or experiments measuring grip strength in rodents.
Proper citation: Platform for Acoustic STArtle (RRID:SCR_021516) Copy
https://github.com/MouseLand/facemap
Software toolbox for unsupervised video analysis of rodent behavior.Used for videographic processing of head fixed rodent behavior.
Proper citation: FaceMap (RRID:SCR_021513) Copy
https://github.com/kscottz/SkinnerBox
Software tool for data logging and analysis.
Proper citation: Skinner Box (RRID:SCR_021514) Copy
https://github.com/ratcave/ratcave
Software 3D graphics python package for cognitive psychology experiments. Open source, cross platform Python library that adds 3D stimulus support to all OpenGL-based 2D Python stimulus libraries. These libraries include VisionEgg, Psychopy, Pyglet, and PyGam.
Proper citation: Ratcave (RRID:SCR_021599) Copy
https://github.com/bonsai-rx/bonsai
Software tool as event based framework for processing and controlling data streams. Open source software tool as visual language for reactive programming.Used for composing reactive and asynchronous data streams coming from video cameras, microphones, electrophysiology systems or data acquisition boards.
Proper citation: Bonsai (RRID:SCR_021512) Copy
https://github.com/cortex-lab/Rigbox
Open source software MATLAB toolbox for running behavioral neuroscience experiments and managing data.Used for probing neurons and behavior. Used for managing behavioral neuroscience experiments and acquiring experiment related data.
Proper citation: Rigbox (RRID:SCR_021517) Copy
https://github.com/mne-tools/mne-cpp
Software tool for real time processing of electrophysiological data.
Proper citation: MNE Scan (RRID:SCR_021530) Copy
https://edspace.american.edu/openbehavior/project/ardbark/
Project related to fear conditioning studies.Includes hardware and software tools. Provides Arduino based device for producing naturalistic stimuli which can be integrated with existing commercial operant chambers with few modifications.. Stores custom made .wav files on SD card, interfaces with Med System and plays the .wav files through ceiling mounted speakers.
Proper citation: Ardbark project (RRID:SCR_021494) Copy
https://edspace.american.edu/openbehavior/project/novel-gustometer/
Project related to taste sensory system research in humans on behavioral, electrophysiological and hemodynamic activity levels.Provided system includes hardware and software tools.
Proper citation: Novel Gustometer for Human Taste Research project (RRID:SCR_021495) Copy
https://edspace.american.edu/openbehavior/project/hasra/
Project includes system for individualized training of group housed mice in single pellet reaching task.System allows user to host up to 5 mice in their home environment and automatically administer single pellet reaching test to those animals.Platform for training and assessing skilled reaching in mice with minimal need for experimenter handling.
Proper citation: Home Cage Automated Skilled Reaching Apparatus project (RRID:SCR_021492) Copy
https://github.com/yorambenshaul/optimouse
Software tool for analysis of mouse position data.Open source software to analyze positions of individual mice, specifically their nose positions, in behavioral arena with the goal of minimizing error.
Proper citation: Optimouse (RRID:SCR_021527) Copy
https://edspace.american.edu/openbehavior/project/diynamic/
Project is related to measurement of complex phenotypes in homecage. Homecage automated open source behavioral testing sytem to enable high throughput 24h testing of many standard operant paradigms. Using Arduino platform and easily sourced inexpensive components system can display light cues and dispense liquid rewards and has nosepoke receptacles with infrared detectors for operant responses, within homecage.Method provided by Dartmouth College scientists.
Proper citation: DIY-NAMIC project (RRID:SCR_021489) Copy
https://github.com/mtu-most/linear-actuator
Code and model files for open source linear actuator. Part of Pearce Lab Syringe Pump system.
Proper citation: linear actuator (RRID:SCR_021613) Copy
https://github.com/KravitzLab/ROBucket
Software tool as ROBucket source code.
Proper citation: Rodent Operant Bucket (RRID:SCR_021610) Copy
https://github.com/jf-lab/chendoscope
Software tool as part of CHEndoscope. Acquisition software that interfaces with CHEndoscope Ximea USB camera. This code is compatible with Linux and Windows systems.
Proper citation: chendoscope (RRID:SCR_021616) Copy
https://github.com/jamieboyd/AutoHeadFix
Software Python code for automated control of behavioural apparatus and imaging for mice in home cage environment.Part of Homecage Task Training and Mesoscale Imaging system.
Proper citation: AutoHeadFix (RRID:SCR_021617) Copy
https://github.com/bsbrl/craniobot
Software tool as part of Craniobot system.Generates, sends, and receives commands to communicate with the Craniobot.
Proper citation: craniobot (RRID:SCR_021609) Copy
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