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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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3D DTI Atlas of the Rat Brain In Postnatal Day 5 14 and Adulthood Resource Report Resource Website 1+ mentions |
3D DTI Atlas of the Rat Brain In Postnatal Day 5 14 and Adulthood (RRID:SCR_009437) | 3D DTI Atlas of the Rat Brain | atlas, data or information resource, reference atlas | 3D DTI anatomical rat brain atlases have been created by the UNC- Chapel Hill Department of Psychiatry and the CAMID research collaboration. There are three age groups, postnatal day 5, postnatal day 14, and postnatal day 72. The subjects were Sprague-Dawley rats that were controls in a study on cocaine abuse and development. The P5 and P14 templates were made from scans of twenty rats each (ten female, ten male); the P72, from six females. The individual cases have been resampled to isotropic resolution, manually skull-stripped, and deformably registered via an unbiased atlas building method to create a template for each age group. Each template was then manually segmented using itk-SNAP software. Each atlas is made up of 3 files, a template image, a segmentation, and a label file. | magnetic resonance, adult rat, newborn rat, infant rat, young rat, sprague dawley, male, female |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: University of North Carolina at Chapel Hill; North Carolina; USA |
Control, Normal | UNC Neurodevelopment Disorders Research Center ; NICHD HD 03110; NINDS R41 NS059095; NIDA IP01DA022446-02 |
nlx_155577 | SCR_009437 | 3-Dimensional Diffusion Tensor Imaging (DTI) Atlas of the Rat Brain In Postnatal Day 5 14 and Adulthood | 2026-02-15 09:19:44 | 2 | ||||||
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powereQTL Resource Report Resource Website 1+ mentions |
powereQTL (RRID:SCR_021653) | software application, data processing software, software resource, data analytics software, software toolkit, data analysis software | Software R package and shiny application for sample size and power calculation of bulk tissue and single-cell eQTL analysis. | sample size calculation, bulk tissue, calculation, single-cell eQTL analysis | is listed by: CRAN | NINDS U01 NS120637; American Parkinson Disease Association ; NINDS R01 NS115144; NINDS U01 NS095736; NINDS U01 NS10 0603; Michael J. Fox Foundation for Parkinson Research |
DOI:10.1093/bioinformatics/btab385 | Free, Available for download, Freely available | https://cran.r-project.org/web/packages/powerEQTL/index.html https://github.com/sterding/powerEQTL |
SCR_021653 | 2026-02-15 09:22:39 | 3 | |||||||
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Minian Resource Report Resource Website 1+ mentions |
Minian (RRID:SCR_022601) | software application, data processing software, software resource, software toolkit, data analysis software | Software miniscope analysis pipeline that requires low memory and computational demand so it can be run without specialized hardware. Offers interactive visualization that allows users to see how parameters in each step of pipeline affect output. | Miniscope, analysis pipeline, calcium imaging, mouse, Visualization, OpenBehavior |
is listed by: OpenBehavior has parent organization: Icahn School of Medicine at Mount Sinai; New York; USA |
NIMH DP2MH122399; NIMH R01MH120162; NIBIB R01EB028166; NSF 1926800; NSF 2046583; NINDS U01NS094286; NSF 1700408; NIA F32AG067640; NINDS R03 NS111493; NIDA R21 DA049568; NINDS R01 NS116357 |
PMID:35642786 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/minian/ | SCR_022601 | 2026-02-15 09:22:58 | 4 | |||||||
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nTracer Resource Report Resource Website |
nTracer (RRID:SCR_023032) | software application, image processing software, data processing software, software resource | Software tool as plug-in for ImageJ software. Used for tracing microscopic images. | tracing microscopic images | is a plug in for: ImageJ | Michigan miBRAIN initiative ; NIAID R01AI130303; NSF NSF-1707316; NIMH R01MH110932; NIGMS F31GM116517; NINDS R01NS095367; NIMH P50MH09427; NIH Office of the Director DP2OD006514; NINDS R01NS076467; NINDS U01NS090449; NIGMS P41GM10371; Multidisciplinary University Research Initiative Army Research Office |
PMID:30715234 | Free, Available for download, Freely available | SCR_023032 | 2026-02-15 09:23:02 | 0 | ||||||||
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Voxelation Map of Gene Expression in a Coronal Section of the Mouse Brain Resource Report Resource Website |
Voxelation Map of Gene Expression in a Coronal Section of the Mouse Brain (RRID:SCR_008065) | Voxelation Map of Gene Expression in a Coronal Section of the Mouse Brain | atlas, data or information resource, database | Two-dimensional images of gene expression for 20,000 genes in a coronal slice of the mouse brain at the level of the striatum by using microarrays in combination with voxelation at a resolution of 1 cubic mm gene expression patterns in the brain obtained through voxelation. Voxelation employs high-throughput analysis of spatially registered voxels (cubes) to produce multiple volumetric maps of gene expression analogous to the images reconstructed in biomedical imaging systems. | molecular neuroanatomy resource, gene expression, striatum, voxelation, gene, brain, coronal, microarray, adult mouse, male, c57bl/6j | has parent organization: David Geffen School of Medicine at UCLA; California; USA | Staglin Music Festival and NARSAD Young Investigator Award ; Tobacco-Related Disease Research Program 11RT-0172; Alzheimer's Association IIRG-02-3609; NIDA RO1-DA-015802; NINDS RO1-NS-050148 |
PMID:17504947 | nif-0000-10493 | SCR_008065 | 2026-02-15 09:19:42 | 0 | |||||||
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The NINDS Human Cell and Data Repository (NHCDR) Resource Report Resource Website 10+ mentions |
The NINDS Human Cell and Data Repository (NHCDR) (RRID:SCR_016319) | NHCDR | material resource, tissue bank, biomaterial supply resource | Cell sources currently include fibroblasts and/or induced pluripotent stem cells for Alzheimer's Disease, Amyotrophic Lateral Sclerosis (ALS), Ataxia-telangiectasia, Frontotemporal Lobar Degeneration (FTD), Huntington's Disease, Parkinson's Disease, and healthy controls. Cell sources, including isogenic cell lines for current and new diseases covered by the NINDS will be added over the next several years. | Stem, cell, fibroblast, plutipotent, isogenic |
is used by: NIH Heal Project is recommended by: National Library of Medicine is listed by: re3data.org works with: Cellosaurus |
Alzheimer's Disease, Amyotrophic Lateral Sclerosis (ALS), Ataxia-telangiectasia, Frontotemporal Lobar Degeneration (FTD), Huntington's Disease, Parkinson's Disease | NLM ; NINDS |
Restricted | https://nindsgenetics.org/ | SCR_016319 | NINDS Human Cell and Data Repository (NHCDR) | 2026-02-15 09:21:51 | 16 | |||||
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VALiDATe29 Squirrel Monkey Brain Atlas Resource Report Resource Website 1+ mentions |
VALiDATe29 Squirrel Monkey Brain Atlas (RRID:SCR_015542) | atlas, data or information resource | Atlas was created from MRI scans of squirrel monkey brains. The atlas is currently comprised of multiple anatomical templates, diffusion MRI templates, and ex vivo templates. In addition, the templates are combined with histologically defined cortical labels, and diffusion tractography defined white matter labels. | squirrel brain, squirrel monkey brain, squirrel brain atlas, squirrel mri | has parent organization: Vanderbilt University; Tennessee; USA | NINDS RO1 NS058639; NINDS RO1 NS069909; NINDS RO1 NS078680; NCRR 1S10 RR 17789 |
Available for download | SCR_015542 | VALiDATe29 Atlas | 2026-02-15 09:21:32 | 1 | ||||||||
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Penn Hippocampus Atlas Resource Report Resource Website 1+ mentions |
Penn Hippocampus Atlas (RRID:SCR_000421) | Penn Hippocampus Atlas | atlas, data or information resource | Atlas of segmented and normalized high-resolution postmortem MRI of the human hippocampus. Additional data (raw images) is available through the SCM link. It requires knowing how to use CVS. | magnetic resonance, nifti, hippocampus, mri, postmortem |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: University of Pennsylvania; Philadelphia; USA |
NIA AG027785; NINDS NS061111; NINDS NS058386; NINDS NS045839 |
PMID:18840532 | Free, Available for download, Freely available | nlx_155920 | SCR_000421 | 2026-02-15 09:17:55 | 2 | ||||||
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UCSF Brain Tumor Tissue Bank Resource Report Resource Website |
UCSF Brain Tumor Tissue Bank (RRID:SCR_000647) | material resource, tissue bank, biomaterial supply resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 4th,2023. Brain Tumor Research Center Tissue Bank began collecting tissue in 1978 and has established an organized repository of characterized tissues--frozen, paraffin-embedded, blood and cultures--that are maintained in a manner useful for a wide range of studies. Samples are collected only from patients who have agreed to have their tissues banked and used for future research. Consent documents are maintained in a secure area and associated clinical data are held in a double-password protected computer database. Each sample received into the Tissue Bank is non-identifying number. No protected health information (PHI) is released. To obtain samples, investigators submit a request form to the Manager. The request form requires an explanation of the tissue requested (type, number of samples, justification), description of the study, CHR approval (see new policy regarding human vs. non-human research) and Project Leader authorization. The Manager reviews each request for feasibility before presentation to the Scientific Core Committee. The UCSF Neurosurgery Tissue Bank makes its inventory of stock cell lines available to all investigators. Requested cells are grown in T-25 flasks and shipped FedEx Priority Overnight at the receipient's expense. However, if you prefer, we can ship the frozen cells, packed in dry ice. (Note: some countries restrict dry ice shipments.) | tissue, frozen, paraffin-embedded, blood, culture, frozen tissuefrozen serum, serum, paraffin embedded tissue, research, cell, cell line |
is listed by: One Mind Biospecimen Bank Listing has parent organization: University of California at San Francisco; California; USA |
Tumor | NINDS P01 NS94297; NCI P-50-CA97257 |
THIS RESOURCE IS NO LONGER IN SERVICE | nlx_33528, SCR_006439, nlx_143683 | https://gnome.ucsf.edu/tbank/ | SCR_000647 | UCSF Brain Tumor Research Center Tissue Bank, UCSF Brain Tumor Research Center Tissue Core, UCSF Neurosurgery Tissue Bank, UCSF Neurological Surgery Tissue Bank, UCSF BTRC Tissue Core | 2026-02-15 09:17:58 | 0 | |||||
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Emory ADRC Tissue and Biospecimen Banking Facility Resource Report Resource Website |
Emory ADRC Tissue and Biospecimen Banking Facility (RRID:SCR_000551) | material resource, tissue bank, biomaterial supply resource | The Alzheimer's Disease Research Center at Emery University maintains an active brain bank to facilitate the acquisition, storage, handling and distribution of well-characterized autopsy brain tissue and other materials to investigators. It contains frozen tissue and brain specimens, formalin fixed tissue, paraformaldehyde fixed tissue, and cryopreserved tissue. The ADRC also has access to tissues and samples related to other neurodegenerative diseases. It contains plasma samples, serum samples, lymphoblast cell lines, and cerebrospinal fluid. | brain bank, biomaterial supply resource, brain tissue, plasma, cerebral spinal fluid, serum, lymphoblast cell line, buffy coat isolate, buffy coat, frozen, paraffin block, paraformaldehyde-fixed, cryopreserved, alzheimer's disease, parkinson's disease, neurodegenerative disease, tauopathy, huntington's disease, normal control |
is listed by: One Mind Biospecimen Bank Listing is affiliated with: Emory Alzheimer's Disease Research Center is related to: Emory Neurology Database has parent organization: Emory University School of Medicine; Atlanta; Georgia; USA |
Alzheimer's disease, Parkinson's disease, Neurodegenerative disease, Tauopathy, Huntington's disease, Creutzfeldt-Jakob Syndrome, Dementia, Movement disorder, Sleep disorder, Stroke, Neuromuscular disease, Nervous system disease, Amyotrophic Lateral Sclerosis, Restless Leg Syndrome | NINDS P30 NS055077 | Public, Investigators must notify the ADRC of data use, Investigators must send a final copy of any accepted manuscript that used data or recruited research participations from the ADRC, Grant acknowledgement required, Institution acknowledgement required | nlx_144036 | SCR_000551 | Emory Tissue and Biospecimen Banking Facilities, Emory Tissue & Biospecimen Banking Facility, Emory ADRC Tissue & Biospecimen Banking Facility | 2026-02-15 09:17:57 | 0 | ||||||
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WTCHG Genome Scan Viewer Resource Report Resource Website 1+ mentions |
WTCHG Genome Scan Viewer (RRID:SCR_001635) | GSCANDB | data or information resource, database, service resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 23,2022. Database / display tool of genome scans, with a web interface that lets the user view the data. It does not perform any analyses - these must be done by other software, and the results uploaded into it. The basic features of GSCANDB are: * Parallel viewing of scans for multiple phenotypes. * Parallel analyses of the same scan data. * Genome-wide views of genome scans * Chromosomal region views, with zooming * Gene and SNP Annotation is shown at high zoom levels * Haplotype block structure viewing * The positions of known Trait Loci can be overlayed and queried. * Links to Ensembl, MGI, NCBI, UCSC and other genome data browsers. In GSCANDB, a genome scan has a wide definition, including not only the usual statistical genetic measures of association between genetic variation at a series of loci and variation in a phenotype, but any quantitative measure that varies along the genome. This includes for example competitive genome hybridization data and some kinds of gene expression measurements. | genome, gene, snp, trait, genotype, phenotype, visualization, region, chromosome, quantitative trait locus, hybridization, gene expression | has parent organization: University of Oxford; Oxford; United Kingdom | NIAAA U01AA014425; NCRR R24RR015116; NIGMS R01GM072863; NINDS R01NS049445; NIMH P20-MH 62009; NIAAA U24AA13513 |
THIS RESOURCE IS NO LONGER IN SERVICE | nlx_153902 | SCR_001635 | Wellcome Trust Centre for Human Genetics Genome Scan Viewer, Genome Scan Viewer, Genome Scan Database | 2026-02-15 09:18:08 | 3 | ||||||
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NeuroMorpho.Org Resource Report Resource Website 50+ mentions |
NeuroMorpho.Org (RRID:SCR_002145) | database, service resource, storage service resource, data repository, data or information resource | Centrally curated inventory of digitally reconstructed neurons associated with peer-reviewed publications that contains some of the most complete axonal arborizations digitally available in the community. Each neuron is represented by a unique identifier, general information (metadata), the original and standardized ASCII files of the digital morphological reconstruction, and a set of morphometric features. It contains contributions from over 100 laboratories worldwide and is continuously updated as new morphological reconstructions are collected, published, and shared. Users may browse by species, brain region, cell type or lab name. Users can also download morphological reconstructions for research and analysis. Deposition and distribution of reconstruction files ultimately prevents data loss. Centralized curation and annotation aims at minimizing the effort required by data owners while ensuring a unified format. It also provides a one-stop entry point for all available reconstructions, thus maximizing data visibility and impact. | neuron, morphological reconstruction, morphometry, axonal arborization, digital neuronal reconstruction, neuronal reconstruction, neuronal morphology, data sharing, annotation, brain region, neocortex, digital reconstruction, neurogenetics, neurochemistry, neuroscience, neurology, FASEB list |
is used by: NIF Data Federation is used by: BICCN is recommended by: National Library of Medicine is recommended by: NIDDK Information Network (dkNET) is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases is listed by: re3data.org is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: DONE: Detection of Outlier NEurons is related to: NIF Literature is related to: Computational Neurobiology and Imaging Center is related to: Integrated Manually Extracted Annotation is related to: xyz2swc is related to: Allen Institute for Brain Science has parent organization: George Mason University; Virginia; USA is parent organization of: NeuroMorpho.Org species ontology is parent organization of: NeuroMorpho.Org species ontology old |
NINDS R01 NS39600; MURI ONR N000141010198 |
PMID:17728438 PMID:16552417 PMID:18949582 |
Free, Available for download, Freely available | nif-0000-00006, r3d100010107 | http://www.nitrc.org/projects/neuromorpho_org http://neuromorpho.org/ https://doi.org/10.17616/R3WW2K |
SCR_002145 | Neuro Morpho, NeuroMorpho.org, NeuroMorpho | 2026-02-15 09:18:15 | 96 | |||||
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KESM brain atlas Resource Report Resource Website 1+ mentions |
KESM brain atlas (RRID:SCR_001559) | KESMBA | atlas, data or information resource, source code, software resource | A web-based, light-weight 3D volume viewer that serves large volumes (typically the whole brain) of high-resolution mouse brain images (~1.5 TB per brain, ~1 um resolution) from the Knife-Edge Scanning Microscope (KESM), invented by Bruce H. McCormick. Currently, KESMBA serves the following data sets: * Mouse: Whole-brain-scale Golgi (acquired 2008 spring): neuronal morphology: Choe et al. (2009) * Mouse: Whole-brain India Ink (acquired 2008 spring): vascular network: Choe et al. (2009); Mayerich et al. (2011); * Mouse: Whole-brain Golgi (acquired 2011 summer): neuronal morphology: Choe et al. (2011); Chung et al. (2011); * Mouse: Whole-brain Nissl (acquired 2009-2010 winter): somata (Choe et al. 2010) (Coming soon) They will ship you the full data set on a hard drive if you provide them with the hard drive and shipping cost. | golgi stain, 3d image, brain, connectomics, data set | has parent organization: Texas A and M University; Texas; USA | NINDS 1R01-NS54252 | PMID:22275895 | Free, Freely available | nlx_152869 | SCR_001559 | KESMBA: Knife-Edge Scanning Microscope Brain Atlas, Knife-Edge Scanning Microscope Brain Atlas | 2026-02-15 09:18:07 | 3 | |||||
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PD-DOC Resource Report Resource Website |
PD-DOC (RRID:SCR_001596) | PD-DOC | portal, database, service resource, storage service resource, data repository, data or information resource, topical portal | THIS RESOURCE IS NO LONGER IN SERVICE, documented on December 02, 2011. Notice: This domain name expired on 10/29/11 and is pending renewal or deletion PD-DOC is a portal and a database resource, hosting a database and linking to other databases and data sets of clinical and translational data. PD-DOC functions to organize and facilitate clinical and translational research in Parkinson's disease. The PD-DOC Database contains standardized data collected by user institutions on large numbers of patients with Parkinsons disease and other parkinsonian disorders. In some cases, data is obtained at a single point in time, while in others data is collected repeatedly over time. The PD-DOC Database is composed of the Core Data Set (CDS) which consists of those variables required to be gathered for each subject whose data is entered into the PD-DOC database. In 2005, working groups of Udall Center and invited experts deliberated to establish the components of each CDS section (e.g. General Clinical, Cognitive/Behavioral, Postmortem Brain Neuropathological Findings). The PD-DOC CDS was established and designed to optimize data analyses and data mining for large numbers of subjects participating in a variety of research studies. In most cases corresponding DNA samples are available form the NINDS Human Genetic Repository (at Coriell). Much of the website is publicly available for viewing. To request access to sections of the website dealing with downloading or requesting data, requesting a consultation, or submitting data or other information you will need to register. Before registering, you should read the PD-DOC Policies. Note that PD-DOC data can be used for research purposes only. Once your registration is successfully completed you will be automatically logged into the website. | data, parkinson's disease, translational research, clinical, gds-15, cowat, dna, hoehn and yahr, idiopathic pd, lnst, merq, mmse, npi-q, parkinsonism, se/adl, updrs |
is related to: NINDS Repository has parent organization: University of Rochester; New York; USA |
NINDS U01NS050095 | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-10109 | SCR_001596 | The Parkinson's Disease Data and Organizing Center (PD-DOC), Parkinson's Disease Data and Organizing Center, The Parkinson's Disease Data and Organizing Center | 2026-02-15 09:18:08 | 0 | ||||||
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Diffusion MRI of Traumatic Brain Injury Resource Report Resource Website |
Diffusion MRI of Traumatic Brain Injury (RRID:SCR_001637) | Diffusion MRI of TBI | topical portal, data or information resource, portal | Project to define a roadmap for diffusion MR imaging of traumatic brain imaging and design an infrastructure to implement the recommendations and tested to ensure feasibility, disseminate results, and facilitate deployment and adoption. The research roadmap and infrastructure development will concentrate on three areas: 1) standardization of diffusion imaging methodology, 2) trial design and patient selection for acute or chronic therapy, and 3) development of multi-center collaborations and repositories for evaluating whether advanced diffusion imaging does improve decision making and TBI patients' outcomes. # DTI MRI reproducability: One of the major areas of investigation in this project is to study the reproducibility of data acquisition and image analysis algorithms. Understanding reproducibility defines a base level of deviation from which scans can be analyzed with statistical significance. As part of this work they are also developing site qualification criteria with the intention of setting limits on the MR system minimal performance for acceptable use in TBI evaluation. # Infrastructure for image storage, analysis and visualization: There is a continuing need to refine and extend software methods for diffusion MRI data analysis and visualization. Not only to translate tools into clinical practice, but also to encourage continuation of the innovation and development of new tools and techniques. To deliver upon these goals they are designing and implementing a storage and computational infrastructure to provide access to shared datasets and intuitive interfaces for analysis and visualization through a variety of tools. A strong emphasis has been placed on providing secure data sharing and the ability to add community defined common data elements. The infrastructure is built upon a Software-as-a-Service model, in which tools are hosted and managed remotely allowing users access through well-defined interfaces. The final service will also facilitate composition or orchestration of workflows composed of different analysis and processing tasks (for example using LONI or XNAT pipelines) with the ultimate goal of providing automated no-click evaluations of diffusion MRI data. # Tool development: The final aspect of this project aims to facilitate and encourage tool development and contribution. By providing access to open datasets, they will create a platform on which tool developers can compare and improve and their tools. When tools are sufficiently mature they can be exposed in the infrastructure mentioned above and used by researchers and other developers. | diffusion tensor imaging, diffusion mri, standard specification, image repository, analysis, visualization, data sharing, common data element, service resource, data set |
is related to: vIST/e is related to: Camino is related to: DTI and Fibertools Software Package is related to: Diffusion Tensor Imaging ToolKit is related to: ExploreDTI is related to: Connectome Mapping Toolkit is related to: TORTOISE is related to: MITK Diffusion is related to: MRtrix is related to: MIPAV: Medical Image Processing and Visualization is related to: DTI Blog is related to: FSL has parent organization: University of Chicago; Illinois; USA |
Traumatic brain injury | NINDS | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_153906 | SCR_001637 | 2026-02-15 09:18:08 | 0 | ||||||
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NIH Pediatric MRI Data Repository Resource Report Resource Website |
NIH Pediatric MRI Data Repository (RRID:SCR_014149) | NIHPD | image collection, data or information resource, database | A database which contains longitudinal structural MRIs, spectroscopy, DTI and correlated clinical/behavioral data from approximately 500 healthy, normally developing children, ages newborn to young adult. | database, image collection, structural mri, dti, spectroscopy, human brain, child |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: National Institutes of Health |
NICHD ; National Institute on Drug Abuse ; NIMH ; NINDS |
Available to the research community, Access must be granted | http://pediatricmri.nih.gov/nihpd/info/index.html | SCR_014149 | Pediatric MRI Data Repository, NIH MRI Study of Normal Brain Development Pediatric MRI Data Repository | 2026-02-15 09:20:49 | 0 | ||||||
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Intrinsic Unscented Kalman Filter (IUKF) Tractography Software v1.0 Resource Report Resource Website |
Intrinsic Unscented Kalman Filter (IUKF) Tractography Software v1.0 (RRID:SCR_014127) | software application, data visualization software, data processing software, software resource, 3d visualization software | A tractography algorithm for HARDI which provides a relatively accurate and efficient fiber tracking mechanism by reconstructing a bi-tensor model for underlying signals and exploiting intrinsic operations on the space of diffusion tensors. Given HARDI data sets, IUKF is capable of tracking in the presence of complex local geometries, such as crossing and kissing fibers. Reconstruction is only performed at the voxels along estimated fibers. | filter, data visualization software, 3d visualization, tractography, algorithm, fiber tracking, HARDI |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: University of Florida; Florida; USA |
NINDS NS066340 | Available for download | http://www.cise.ufl.edu/~salehian/Softwares.html | SCR_014127 | IUKF Tractography Software v1.0, IUKF Tractography Software, Intrinsic Unscented Kalman Filter Tractography Software, Intrinsic Unscented Kalman Filter Tractography Software v1.0 | 2026-02-15 09:20:38 | 0 | |||||||
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PAGODA Resource Report Resource Website |
PAGODA (RRID:SCR_017099) | software application, data processing software, data analysis software, software resource | Software tool for analyzing transcriptional heterogeneity to detect statistically significant ways in which measured cells can be classified. Used to resolve multiple, potentially overlapping aspects of transcriptional heterogeneity by testing gene sets for coordinated variability among measured cells. | heterogeneity, transcriptional, detect, statistically, cell, classified, overlapping, gene, set, coordinated, variability |
is related to: pagoda2 has parent organization: Harvard University; Cambridge; United States |
Ellison Medical Foundation ; NSF NSF-14-532; NSF DGE1144152; NIMH U01 MH098977; NINDS R01 NS084398; NIA T32 AG00216 |
PMID:26780092 | Free, Available for download, Freely available | http://hms-dbmi.github.io/scde/index.html | SCR_017099 | Pathway And Gene set OverDispersion Analysis, pagoda | 2026-02-15 09:21:15 | 0 | ||||||
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seqNMF Resource Report Resource Website 1+ mentions |
seqNMF (RRID:SCR_017068) | software application, data processing software, data analysis software, software resource | Software tool for unsupervised discovery of sequential structure. Used to detect sequences in neural data generated by internal behaviors, such as animal thinking or sleeping. Used for unsupervised discovery of temporal sequences in high dimensional datasets in neuroscience without reference to external markers. | sequence, structure, high, dimention, dataset, neuroscience, repeated, sequential, pattern, data | has parent organization: Massachusetts Institute of Technology; Massachusetts; USA; | Simons Foundation Simons Collaboration for the Global Brain ; NIDCD R01 DC009183; G Harold and Leila Y. Mathers Foundation ; U.S. Department of Defense NDSEG Fellowship program ; Department of Energy ; Labor and Economic Growth Computational Science Graduate Fellowship ; NIBIB T32 EB019940; NINDS U19 NS10 4648; NIMH R25 MH062204 |
PMID:30719973 | Free, Available for download, Freely available | SCR_017068 | 2026-02-15 09:21:57 | 5 | ||||||||
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SBFSEM-tools Resource Report Resource Website 1+ mentions |
SBFSEM-tools (RRID:SCR_017350) | software application, data visualization software, data processing software, software resource, 3d visualization software, data analysis software | Data analysis and 3D visualization for connectomics and serial electron microscopy. This toolbox provides missing 3D visualization and analysis tools for cylinder-based annotations. Integration with contour, skeleton based annotations and common morphology file formats is also supported. | Data analysis, 3D visualization, connectomics, serial electron microscopy, annotation, morphology |
is related to: MATLAB has parent organization: University of Washington; Seattle; USA |
NEI EY027859; NINDS NS099578; NEI EY07031; NEI EY001730 |
DOI:10.1101/667204 | Free, Available for download, Freely available | https://github.com/neitzlab/SBFSEM-tools | SCR_017350 | 2026-02-15 09:22:03 | 9 |
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