Searching the RRID Resource Information Network
Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.
SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3D Printed Superfusion Chamber Resource Report Resource Website |
3D Printed Superfusion Chamber (RRID:SCR_022901) | data or information resource, project portal, portal, instrument resource | Project consists of suite of 3D-printed tools including superfusion chamber with independent brain presser and animal stand. Modular device that facilitates transfer of pharmacological agents and brain access for electrodes and/or lenses for imaging. Provides stable conditions for electrophysiological and neuroimaging recordings. Device can be print either in-house or through 3d-printing service. | Open Behavior, electrophysiological and neuroimaging recordings, 3D-printed tools, superfusion chamber, brain presser, animal stand | is listed by: OpenBehavior | DOI:10.1523/ENEURO.0305-22.2022 | https://gitlab.com/lab-equipment-assemblies1/superfusion-chamber/-/tree/master | SCR_022901 | 3D Printed Superfusion Chamber project | 2026-02-17 10:04:27 | 0 | ||||||||
|
Variational Embedding of Animal Motion Resource Report Resource Website 1+ mentions |
Variational Embedding of Animal Motion (RRID:SCR_022477) | VAME | data visualization software, data processing software, software application, software resource | Software Python tool to cluster behavioral signals obtained from pose estimation tools. Unsupervised probabilistic deep learning framework capable of finding behavioral motifs in pose estimation data. Capable of augmenting quantitative behavioral analyses of data derived from standard pose-estimation software packages. Written based on core functions from DeepLabCut, and readily works with pose data from that package. Can also work with data from other pose estimation packages such as SLEAP. | OpenBehavior, vame, variational embedding of animal motion, pytorch, pose estimation |
is listed by: OpenBehavior is related to: DeepLabCut is related to: SLEAP, LEAP and MotionMapper project |
Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/vame/ | SCR_022477 | Variational Animal Motion Embedding, VAME: Variational Embedding of Animal Motion | 2026-02-17 10:04:20 | 2 | |||||||
|
DANNCE Resource Report Resource Website 1+ mentions |
DANNCE (RRID:SCR_023061) | 3d visualization software, software application, data processing software, software resource, data visualization software | Convolutional neural network that calculates 3D positions of user-defined anatomical landmarks on behaving animals from videos taken at multiple angles. Works on recorded video data from multiple cameras. Used for 3D markerless pose estimation and tracking. | OpenBehavior, track animals, pose information, 3D positions, video data, multiple cameras, 3D markerless pose estimation and tracking, | is listed by: OpenBehavior | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/?s=DANNCE | SCR_023061 | 3-Dimensional Aligned Neural Network for Computational Ethology | 2026-02-17 10:04:16 | 1 | ||||||||
|
PyMouseTracks Resource Report Resource Website |
PyMouseTracks (RRID:SCR_024453) | PMT | source code, software resource, instrument resource | Open source, adaptable tracking system for multiple rodents. Scalable and customizable system for tracking and behavior assessment consists of Raspberry Pi based video and RFID acquisition. Maximum of six rodents of any coat color can be tracked simultaneously in any user defined arena with few restrictions. For pose estimation and travel trajectory analysis, PyMouseTracks supports interfacing with open source packages such as DeepLabCut and Traja. | OpenBehavior, tracking system, tracking system for multiple rodents, Raspberry Pi based video, RFID acquisition, |
is listed by: OpenBehavior is related to: DeepLabCut |
Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/pymousetracks/ | SCR_024453 | 2026-02-17 10:04:44 | 0 | ||||||||
|
LFP Monitoring Resource Report Resource Website |
LFP Monitoring (RRID:SCR_024428) | source code, software resource, instrument resource | Low cost platform for multianimal chronic Local Field Potential video monitoring with Graphical User Interface for seizure detection and behavioral scoring. Enables chronic monitoring of several animals simultaneously, synchronizes bilateral local field potential and video streams in real time, and parses recorded data into manageable file sizes. Hardware solution leverages Intan and Open Ephys acquisition systems and software solution is implemented in Bonsai. Data are synchronized and parsed in Bonsai, allowing for flexibility and scalability of up to 128 channels per animal. The use of Intan adapter board for LFP video recordings allows compatibility with large variety of recording devices. Custom made electrodes and cables were components for the chronic LFP recordings. Used as acquisition system for long term video neurophysiology recordings. | OpenBehavior, acquisition system, long term video neurophysiology recordings, seizure detection, behavioral scoring, multianimal chronic Local Field Potential, video monitoring, LFP video recording, Graphical User Interface for seizure detection and behavioral scoring, Intan adapter board, Open Ephys acquisition system, Bonsai, custom made electrodes and cables, instrument, device, | is listed by: OpenBehavior | PMID:36192155 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/lfpmonitoring/ | SCR_024428 | Local Field Potential video Monitoring | 2026-02-17 10:04:48 | 0 | |||||||
|
MotionMapper Resource Report Resource Website 1+ mentions |
MotionMapper (RRID:SCR_021384) | data analysis software, software application, data processing software, software resource | Software tool to work on videos (not poses).Uses image analysis and multivariate statistical methods to find stereotyped behaviors in flies, mice, and other species. | Find stereotyped behaviors, organisms behaviors, Behavior Measurement, Video Analysis, Behavior Video Analysis, Behavioral Data Analysis, OpenBehavior |
is listed by: OpenBehavior is related to: SLEAP, LEAP and MotionMapper project has parent organization: Princeton University; New Jersey; USA |
Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/sleap/ | SCR_021384 | 2026-02-17 10:03:22 | 2 | |||||||||
|
Behavioral Segmentation of Open-field in DeepLabCut Resource Report Resource Website 1+ mentions |
Behavioral Segmentation of Open-field in DeepLabCut (RRID:SCR_021385) | B-SOiD | software application, data processing software, data analysis software, software resource, software toolkit | Software pipeline that pairs unsupervised pattern recognition with supervised classification to achieve fast predictions of behaviors that are not predefined by users.Unsupervised learning algorithm that discovers and classifies actions based on inherent statistics of data points provided. | OpenBehavior, pairs unsupervised pattern recognition, supervised classification, behavior predictions, discovers actions, classifies actions |
is listed by: OpenBehavior is related to: Behavioral Segmentation of Open-field in DeepLabCut project is related to: Closed Loop Automated Reaching Apparatus |
DOI:10.1101/770271 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/b-soid-unsupervised-behavior-analysis/ | SCR_021385 | B-SOiD v2.0 | 2026-02-17 10:04:00 | 6 | ||||||
|
Attys project Resource Report Resource Website |
Attys project (RRID:SCR_021461) | data or information resource, project portal, portal, instrument resource | Portal related to biomedical signals.Provides wearable data acquisition device with special focus on biomedical signals such as heart activity (ECG), muscle activity (EMG) and brain activity (EEG).Open source high precision bluetooth data acquisition device. | Biomedical signals acquire, heart activity data acquire, muscle activity data acquire, brain activity data acquire, data acquisition device, bluetooth data acquisition device, OpenBehavior, Instrument | is listed by: OpenBehavior | Free, Freely available | SCR_021461 | Attys | 2026-02-17 10:03:23 | 0 | |||||||||
|
AutonoMouse project Resource Report Resource Website |
AutonoMouse project (RRID:SCR_021462) | data or information resource, project portal, portal, instrument resource | Project related to self initiated conditioning and behavior tracking in mice. Provides automated system that can track large numbers (over 25) of socially housed mice through implanted RFID chips on mice. With RFID trackers and other analyses, behavior of mice can be tracked as they train and are subsequently tested on (or self-initiate testing in) odor discrimination task over months with thousands of trials performed every day. | AutonoMouse system control, PyQt5 control GUI, schedule ordering, experiment monitoring, OpenBehavior, Instrument | is listed by: OpenBehavior | DOI:10.1371/journal.pone.0211571 | Free, Freely available | SCR_021462 | AutonoMouse | 2026-02-17 10:04:01 | 0 | ||||||||
|
Autoreward2 project Resource Report Resource Website |
Autoreward2 project (RRID:SCR_021460) | data or information resource, project portal, portal, instrument resource | Project related to detection and rewarding rodents in modified T-maze task. System designed to detect and reward rodents in modified T maze provided by Ruhr University Bochum, Germany scientists. | Infrared triggered dual reward system, Autoreward2 system, detect rodents, reward rodents, Tmaze, OpenBehavior, Instrument |
is listed by: OpenBehavior has parent organization: Ruhr University Bochum; North Rhine-Westphalia; Germany |
Free, Freely available | SCR_021460 | Autoreward2 | 2026-02-17 10:04:05 | 0 | |||||||||
|
BPM Biosignals project Resource Report Resource Website |
BPM Biosignals project (RRID:SCR_021459) | data or information resource, project portal, portal, instrument resource | Portal as educational resource regarding construction and implementation of bioamplifiers as well as interpretation of biosignals. | Bioamplifier construction, bioamplifier implementation, biosignals interpretation, OpenBehavior, Instrument | is listed by: OpenBehavior | Free, Freely available | SCR_021459 | BPM Biosignals | 2026-02-17 10:03:48 | 0 | |||||||||
|
Automated mouse homecage two bottle choice test project Resource Report Resource Website |
Automated mouse homecage two bottle choice test project (RRID:SCR_021457) | data or information resource, project portal, portal, instrument resource | Project related to assessing preferences by mice among fluids in their homecages.Provided system includes homecage fitted apparatus for automated, photobeam based detection of licks in two bottle choice task. Used for automated mouse homecage two bottle choice test. | Homecage fitted apparatus, licks automated detection, licks photobeam based detection, two bottle choice task, instrument, equipment, USEDit, OpenBehavior, Instrument | is listed by: OpenBehavior | Free, Freely available | SCR_021457 | Automated mouse homecage two bottle choice test | 2026-02-17 10:03:23 | 0 | |||||||||
|
Closed Loop System project Resource Report Resource Website |
Closed Loop System project (RRID:SCR_021475) | data or information resource, project portal, portal, instrument resource | Portal includes system for combined behavioral tracking, electrophysiology, and closed loop stimulation provided by University of Oslo scientists.Integrates Bonsai and Open Ephys with multiple modules.Provides guide for setting up this system. | Combined behavioral tracking, electrophysiology, closed loop stimulation, OpenBehavior, Instrument |
is listed by: OpenBehavior has parent organization: University of Oslo; Oslo; Norway |
DOI:10.1088/1741-2552/aacf45 | Free, Freely available | SCR_021475 | Closed Loop System | 2026-02-17 10:03:49 | 0 | ||||||||
|
Ultrasonic Vocalizations Detector project Resource Report Resource Website |
Ultrasonic Vocalizations Detector project (RRID:SCR_021471) | data or information resource, project portal, portal, instrument resource | Project related to ultrasonic vocalizations detection. Provides device designed for automatic detection of 50kHz ultrasonic vocalizations. | Automated detection, 50 kHz, ultrasonic vocalizations, template matching in XBAT, Ultrasonic Vocalization Detector, OpenBehavior, Instrument | is listed by: OpenBehavior | DOI:10.1016/j.jneumeth.2014.08.007 | Free, Freely available | SCR_021471 | Ultrasonic Vocalizations Detector | 2026-02-17 10:03:23 | 0 | ||||||||
|
EthoWatcher Resource Report Resource Website 1+ mentions |
EthoWatcher (RRID:SCR_021504) | data analysis software, software application, data processing software, software resource | Software tool for behavioral and video tracking analysis in laboratory animals. Used to support detailed ethography, video tracking, and extraction of kinematic variables from digital video files of laboratory animals. | Video tracking, kinematic variables extraction. digital video files, laboratory animals, OpenBehavior |
is listed by: OpenBehavior is related to: EthoWatcher project |
DOI:10.1016/j.compbiomed.2011.12.002 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/ethowatcher/ | SCR_021504 | ETHOWATCHER | 2026-02-17 10:03:49 | 2 | |||||||
|
Feldman Lab Lickometer project Resource Report Resource Website |
Feldman Lab Lickometer project (RRID:SCR_021469) | data or information resource, project portal, portal, instrument resource | Project related to function of cerebral cortex. Included model system for studying cortical function is provided by UC Berkeley scientists. System includes lickometer which employs infrared beam and sensor to minimize electrical noise artifacts during neurophysiology experiments and can be easily mounted in micromanipulator for precise and repeatable positioning.Open source lickometer was designed in conjunction with open source water delivery system.Together, these provide basic hardware for DIY behavioral assay and reward system for mice. | Infrared beam, infrared sensor, neurophysiology experiment, DIY behavioral assay device, reward system for mice, OpenBehavior, Instrument |
is listed by: OpenBehavior has parent organization: University of California at Berkeley; Berkeley; USA |
Free, Freely available | SCR_021469 | Feldman Lab Lickometer | 2026-02-17 10:04:05 | 0 | |||||||||
|
Mousecam Resource Report Resource Website |
Mousecam (RRID:SCR_021503) | data analysis software, software application, data processing software, software resource | Software Python package with functions for extracting and analyzing data recorded using camera system.Used to monitor behaviors including eye position, whisking, and ear movements in unrestrained animals.Can be mounted in combination with neural implants for recording brain activity. | Lightweight head mounted camera system, head movement sensors, monitor eye position, monitor pupil dilation, monitor whisking, monitor pinna movements, monitor head motion, unrestrained mice, freely behaving mice, multichannel electrophysiology, OpenBehavior |
is listed by: OpenBehavior is related to: Mousecam project |
DOI:10.1016/j.neuron.2018.09.020 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/mousecam/ | SCR_021503 | 2026-02-17 10:04:01 | 0 | ||||||||
|
Hao Chen Lab Repository project Resource Report Resource Website |
Hao Chen Lab Repository project (RRID:SCR_021467) | data or information resource, project portal, portal, instrument resource | Project aims to establish computing platform for rodent behavior research using Raspberry Pi computer. They have built several devices for conducting operant conditioning and monitoring environmental data. | Computing platform, rodent behavior, Raspberry Pi computer, OpenBehavior, Instrument | is listed by: OpenBehavior | SCR_021467 | Hao Chen Lab Repository | 2026-02-17 10:04:01 | 0 | ||||||||||
|
PiDose project Resource Report Resource Website |
PiDose project (RRID:SCR_021441) | data or information resource, project portal, portal, instrument resource | Project related to oral drug administration to group housed mice. Provides open source system for oral drug administration to group housed mice. System includes home cage attached device that weighs individual animals and administers daily dosage of drug solution based on each animal bodyweight through their drinking water. Group housed mice are identified through use of RFID tagging and receive both regular water and drug solution drops by licking at spout within PiDose module. | Oral drug administration, group housed mice, OpenBehavior, Instrument | is listed by: OpenBehavior | DOI:10.1038/s41598-020-68477-2 | Free, Freely available | SCR_021441 | PiDose | 2026-02-17 10:04:05 | 0 | ||||||||
|
Autonomous Training of a Forelimb Motor Task project Resource Report Resource Website |
Autonomous Training of a Forelimb Motor Task project (RRID:SCR_021562) | data or information resource, project portal, portal, instrument resource | Portal related to individualized tracking of self directed motor learning in group housed mice performing skilled lever positioning task in home cage. Provides system for fully autonomous training of group housed mice on forelimb motor task. Task is run and controlled by Raspberry Pi microcomputer, which allows for cages to be monitored remotely through active internet connection. System was developed by University of Ottawa scientists. | Instrument, individualized tracking, self directed motor learning, group housed mice, skilled lever positioning task, home cage, forelimb motor task, OpenBehavior |
is listed by: OpenBehavior is related to: Autonomous Training of a Forelimb Motor Task has parent organization: University of Ottawa; Ontario; Canada |
DOI:10.1152/jn.00115.2017 | Free, Freely available | SCR_021562 | Autonomous Training of a Forelimb Motor Task | 2026-02-17 10:03:50 | 0 |
Can't find your Tool?
We recommend that you click next to the search bar to check some helpful tips on searches and refine your search firstly. Alternatively, please register your tool with the SciCrunch Registry by adding a little information to a web form, logging in will enable users to create a provisional RRID, but it not required to submit.
Welcome to the SPARC SAWG Resources search. From here you can search through a compilation of resources used by SPARC SAWG and see how data is organized within our community.
You are currently on the Community Resources tab looking through categories and sources that SPARC SAWG has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.
If you have an account on SPARC SAWG then you can log in from here to get additional features in SPARC SAWG such as Collections, Saved Searches, and managing Resources.
Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:
If you are logged into SPARC SAWG you can add data records to your collections to create custom spreadsheets across multiple sources of data.
Here are the facets that you can filter the data by.
If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.
