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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.

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Resource Name Proper Citation Abbreviations Resource Type Description Keywords Resource Relationships Related Condition Funding Defining Citation Availability Website Status Alternate IDs Alternate URLs Old URLs Parent Organization Resource ID Synonyms Record Last Update Mentions Count
AutonoMouse project
 
Resource Report
Resource Website
AutonoMouse project (RRID:SCR_021462) data or information resource, project portal, portal, instrument resource Project related to self initiated conditioning and behavior tracking in mice. Provides automated system that can track large numbers (over 25) of socially housed mice through implanted RFID chips on mice. With RFID trackers and other analyses, behavior of mice can be tracked as they train and are subsequently tested on (or self-initiate testing in) odor discrimination task over months with thousands of trials performed every day. AutonoMouse system control, PyQt5 control GUI, schedule ordering, experiment monitoring, OpenBehavior, Instrument is listed by: OpenBehavior DOI:10.1371/journal.pone.0211571 Free, Freely available SCR_021462 AutonoMouse 2026-02-15 09:22:30 0
Autoreward2 project
 
Resource Report
Resource Website
Autoreward2 project (RRID:SCR_021460) data or information resource, project portal, portal, instrument resource Project related to detection and rewarding rodents in modified T-maze task. System designed to detect and reward rodents in modified T maze provided by Ruhr University Bochum, Germany scientists. Infrared triggered dual reward system, Autoreward2 system, detect rodents, reward rodents, Tmaze, OpenBehavior, Instrument is listed by: OpenBehavior
has parent organization: Ruhr University Bochum; North Rhine-Westphalia; Germany
Free, Freely available SCR_021460 Autoreward2 2026-02-15 09:22:04 0
BPM Biosignals project
 
Resource Report
Resource Website
BPM Biosignals project (RRID:SCR_021459) data or information resource, project portal, portal, instrument resource Portal as educational resource regarding construction and implementation of bioamplifiers as well as interpretation of biosignals. Bioamplifier construction, bioamplifier implementation, biosignals interpretation, OpenBehavior, Instrument is listed by: OpenBehavior Free, Freely available SCR_021459 BPM Biosignals 2026-02-15 09:22:35 0
Automated mouse homecage two bottle choice test project
 
Resource Report
Resource Website
Automated mouse homecage two bottle choice test project (RRID:SCR_021457) data or information resource, project portal, portal, instrument resource Project related to assessing preferences by mice among fluids in their homecages.Provided system includes homecage fitted apparatus for automated, photobeam based detection of licks in two bottle choice task. Used for automated mouse homecage two bottle choice test. Homecage fitted apparatus, licks automated detection, licks photobeam based detection, two bottle choice task, instrument, equipment, USEDit, OpenBehavior, Instrument is listed by: OpenBehavior Free, Freely available SCR_021457 Automated mouse homecage two bottle choice test 2026-02-15 09:22:36 0
Closed Loop System project
 
Resource Report
Resource Website
Closed Loop System project (RRID:SCR_021475) data or information resource, project portal, portal, instrument resource Portal includes system for combined behavioral tracking, electrophysiology, and closed loop stimulation provided by University of Oslo scientists.Integrates Bonsai and Open Ephys with multiple modules.Provides guide for setting up this system. Combined behavioral tracking, electrophysiology, closed loop stimulation, OpenBehavior, Instrument is listed by: OpenBehavior
has parent organization: University of Oslo; Oslo; Norway
DOI:10.1088/1741-2552/aacf45 Free, Freely available SCR_021475 Closed Loop System 2026-02-15 09:22:35 0
Ultrasonic Vocalizations Detector project
 
Resource Report
Resource Website
Ultrasonic Vocalizations Detector project (RRID:SCR_021471) data or information resource, project portal, portal, instrument resource Project related to ultrasonic vocalizations detection. Provides device designed for automatic detection of 50kHz ultrasonic vocalizations. Automated detection, 50 kHz, ultrasonic vocalizations, template matching in XBAT, Ultrasonic Vocalization Detector, OpenBehavior, Instrument is listed by: OpenBehavior DOI:10.1016/j.jneumeth.2014.08.007 Free, Freely available SCR_021471 Ultrasonic Vocalizations Detector 2026-02-15 09:22:35 0
Feldman Lab Lickometer project
 
Resource Report
Resource Website
Feldman Lab Lickometer project (RRID:SCR_021469) data or information resource, project portal, portal, instrument resource Project related to function of cerebral cortex. Included model system for studying cortical function is provided by UC Berkeley scientists. System includes lickometer which employs infrared beam and sensor to minimize electrical noise artifacts during neurophysiology experiments and can be easily mounted in micromanipulator for precise and repeatable positioning.Open source lickometer was designed in conjunction with open source water delivery system.Together, these provide basic hardware for DIY behavioral assay and reward system for mice. Infrared beam, infrared sensor, neurophysiology experiment, DIY behavioral assay device, reward system for mice, OpenBehavior, Instrument is listed by: OpenBehavior
has parent organization: University of California at Berkeley; Berkeley; USA
Free, Freely available SCR_021469 Feldman Lab Lickometer 2026-02-15 09:22:36 0
Hao Chen Lab Repository project
 
Resource Report
Resource Website
Hao Chen Lab Repository project (RRID:SCR_021467) data or information resource, project portal, portal, instrument resource Project aims to establish computing platform for rodent behavior research using Raspberry Pi computer. They have built several devices for conducting operant conditioning and monitoring environmental data. Computing platform, rodent behavior, Raspberry Pi computer, OpenBehavior, Instrument is listed by: OpenBehavior SCR_021467 Hao Chen Lab Repository 2026-02-15 09:22:35 0
PiDose project
 
Resource Report
Resource Website
PiDose project (RRID:SCR_021441) data or information resource, project portal, portal, instrument resource Project related to oral drug administration to group housed mice. Provides open source system for oral drug administration to group housed mice. System includes home cage attached device that weighs individual animals and administers daily dosage of drug solution based on each animal bodyweight through their drinking water. Group housed mice are identified through use of RFID tagging and receive both regular water and drug solution drops by licking at spout within PiDose module. Oral drug administration, group housed mice, OpenBehavior, Instrument is listed by: OpenBehavior DOI:10.1038/s41598-020-68477-2 Free, Freely available SCR_021441 PiDose 2026-02-15 09:22:35 0
openEyeTrack project
 
Resource Report
Resource Website
openEyeTrack project (RRID:SCR_021399) data or information resource, project portal, portal, instrument resource Project related to measurement of fast eye movement dynamics.Tracking eye position in head fixed applications system created by scientists from Boston University. Includes software tool as part of multithreaded eye tracker and Teledyne DALSA Camera with GigE-V framework APIs for Linux. Multithreaded eye tracker, tracking eye position system, head fixed application, OpenBehavior, Instrument is listed by: OpenBehavior
is related to: openEyeTrack
has parent organization: Boston University; Massachusetts; USA
DOI:10.21105/joss.01631 Free, Freely available SCR_021399 openEyeTrack 2026-02-15 09:22:35 0
Actifield project
 
Resource Report
Resource Website
1+ mentions
Actifield project (RRID:SCR_021452) data or information resource, project portal, portal, instrument resource Project related to measuring locomotor activity.System includes infrared motion detection and arduino to record activity in variety of chamber set ups. Provides actimeter and software tool to measure and record locomotor activity. Measure locomotor activity, record locomotor activity, rodent locomotor activity, OpenBehavior, Instrument is listed by: OpenBehavior DOI:10.1016/j.ohx.2018.e00047 Free, Freely available SCR_021452 Actifield 2026-02-15 09:22:04 1
Rodent Activity Detector project
 
Resource Report
Resource Website
Rodent Activity Detector project (RRID:SCR_021451) RAD data or information resource, project portal, portal, instrument resource Project related to tracking and recording activity in rodent home cages.Provides device that utilizes passive infrared (PIR) sensor to detect movement in cages and logs data to microSD card. Device is wireless and battery powered, and can record data for about 3 weeks on charge. Passive infrared sensor, detect movement in cages, logs data to microSD card, wireless device, battery powered device, record data, instrument, equipment, USEDit, OpenBehavior, Instrument is listed by: OpenBehavior DOI:10.1523/eneuro.0160-19.2019 Free, Freely available SCR_021451 Rodent Activity Detector 2026-02-15 09:22:35 0
Automated Home Cage Rodent Two bottle Choice Test project
 
Resource Report
Resource Website
Automated Home Cage Rodent Two bottle Choice Test project (RRID:SCR_021445) data or information resource, project portal, portal, instrument resource Project related to studies of liquid ingestive behaviors used in neuroscience to investigate reward related behavior, metabolism, and circadian biology. Provides automated home cage sipper device for monitoring liquid ingestive behavior in rodents developed by Washington University, St. Louis scientists. Homecage fitted apparatus for automated, photobeam based detection of licks in two bottle choice task. Automated home cage sipper device, Sipper, monitoring liquid, ingestive behavior, rodents, instrument, equipment, USEDit, OpenBehavior, Instrument is listed by: OpenBehavior
is related to: SipperViz
DOI:10.1523/eneuro.0292-19.2019 Free, Freely available SCR_021445 Automated Home Cage Rodent Two bottle Choice Test 2026-02-15 09:22:36 0
Platform for Acoustic STArtle project
 
Resource Report
Resource Website
Platform for Acoustic STArtle project (RRID:SCR_021446) PASTA, ratPASTA data or information resource, project portal, portal, instrument resource Project related to multifunctional neurobehavioral system developed by scientists at University of Zagreb School of Medicine, Zagreb, Croatia.System includes hardware and software tools.Provides software package for processing and visualising data from startle experiments in rodents or experiments measuring grip strength in rodents. Startle experiments, rodent, experiments measuring rodents grip strength, OpenBehavior, Instrument is listed by: OpenBehavior
is related to: Platform for Acoustic STArtle
DOI:10.1038/s41598-021-82710-6 Free, Freely available SCR_021446 Platform for Acoustic STArtle 2026-02-15 09:22:29 0
MotionMapper
 
Resource Report
Resource Website
1+ mentions
MotionMapper (RRID:SCR_021384) software application, data processing software, data analysis software, software resource Software tool to work on videos (not poses).Uses image analysis and multivariate statistical methods to find stereotyped behaviors in flies, mice, and other species. Find stereotyped behaviors, organisms behaviors, Behavior Measurement, Video Analysis, Behavior Video Analysis, Behavioral Data Analysis, OpenBehavior is listed by: OpenBehavior
is related to: SLEAP, LEAP and MotionMapper project
has parent organization: Princeton University; New Jersey; USA
Free, Available for download, Freely Available https://edspace.american.edu/openbehavior/project/sleap/ SCR_021384 2026-02-15 09:22:28 2
Behavioral Segmentation of Open-field in DeepLabCut
 
Resource Report
Resource Website
1+ mentions
Behavioral Segmentation of Open-field in DeepLabCut (RRID:SCR_021385) B-SOiD software application, data processing software, software resource, software toolkit, data analysis software Software pipeline that pairs unsupervised pattern recognition with supervised classification to achieve fast predictions of behaviors that are not predefined by users.Unsupervised learning algorithm that discovers and classifies actions based on inherent statistics of data points provided. OpenBehavior, pairs unsupervised pattern recognition, supervised classification, behavior predictions, discovers actions, classifies actions is listed by: OpenBehavior
is related to: Behavioral Segmentation of Open-field in DeepLabCut project
is related to: Closed Loop Automated Reaching Apparatus
DOI:10.1101/770271 Free, Available for download, Freely Available https://edspace.american.edu/openbehavior/project/b-soid-unsupervised-behavior-analysis/ SCR_021385 B-SOiD v2.0 2026-02-15 09:22:33 6
Stytra project
 
Resource Report
Resource Website
Stytra project (RRID:SCR_021416) data or information resource, project portal, portal, instrument resource Project related to involvement in larval zebrafish behavioral experiments.Provides integrated system for stimulation, tracking and closed loop behavioral experiments. Provides timed stimulus presentation, interfacing with external devices and simultaneous real time tracking of behavioral parameters such as position, orientation, tail and eye motion in both freely swimming and head restrained preparations. Control stimulation, track behaviour, closed loop behavioral experiments, larval zebrafish, behavioral parameters, position, orientation, tail, eye motion, freely swimming, head restrained, DeepLabCut, OpenBehavior, Instrument is listed by: OpenBehavior
is related to: Stytra
DOI:10.1371/journal.pcbi.1006699 Free, Freely available SCR_021416 Stytra 2026-02-15 09:22:03 0
Online Animal Tracker
 
Resource Report
Resource Website
1+ mentions
Online Animal Tracker (RRID:SCR_021412) OAT software application, image processing software, data processing software, software resource Software tool as real time position tracker for behavioral research. Used for processing images, extracting object position information, and streaming data to disk and/or the network in real time. Real time animal position tracking, experimental neuroscience, real time object tracking, processing images, extracting object position information, streaming data to disk, OpenBehavior is listed by: OpenBehavior
is related to: Online Animal Tracker project
Free, Available for download, Freely Available https://edspace.american.edu/openbehavior/project/oat/ SCR_021412 2026-02-15 09:22:03 2
LocoWhisk project
 
Resource Report
Resource Website
1+ mentions
LocoWhisk project (RRID:SCR_021430) data or information resource, project portal, portal, instrument resource Portable behavioural set up that incorporates both gait analysis (using pedobarograph) and whisker movements (using high speed video camera and infrared light source).Automatically records both whisker and gait information and provides added statistical tools to analyse data. LocoWhisk system includes ARTv2 software for simultaneous measurement of locomotion behaviours and whisker movements. Simultaneous measurement, locomotion behaviours, whisker movements, rodent behaviour, OpenBehavior, Instrument is listed by: OpenBehavior DOI:10.1016/j.jneumeth.2019.108440 Free, Freely available SCR_021430 LocoWhisk 2026-02-15 09:22:29 1
FaceSync project
 
Resource Report
Resource Website
FaceSync project (RRID:SCR_021393) data or information resource, project portal, portal, instrument resource Project related to emotions and facial expressions. Includes open source guide to building affordable head mount for camera to maintain high temporal and spatial resolution of face throughout duration of experiment. Device is paired with FaceSync, Python toolbox which automatically synchronizes recorded facial expressions to videos and events such as social interactions. Automatically synchronize videos, manually align audio, plot facial landmark movements, graph data, head mounted camera setup, 3D blueprints, recording facial expressions, OpenBehavior, Bio.Tools, Instrument is listed by: OpenBehavior
is related to: FaceSync
PMID:32185017 Free, Freely available SCR_021393 2026-02-15 09:22:33 0

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