Searching the RRID Resource Information Network

Our searching services are busy right now. Please try again later

  • Register
X
Forgot Password

If you have forgotten your password you can enter your email here and get a temporary password sent to your email.

X

Leaving Community

Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.

No
Yes
X
Forgot Password

If you have forgotten your password you can enter your email here and get a temporary password sent to your email.

Preparing word cloud

×

SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.

Search

Type in a keyword to search

Filter by records added date
See new records

Options


Current Facets and Filters

  • Funding Agency:nih (facet)

Facets


Recent searches

Snippet view Table view
Click the to add this resource to a Collection

293 Results - per page

Show More Columns | Download 293 Result(s)

Resource Name Proper Citation Abbreviations Resource Type Description Keywords Resource Relationships Related Condition Funding Defining Citation Availability Website Status Alternate IDs Alternate URLs Old URLs Parent Organization Resource ID Synonyms Record Last Update Mentions Count
Biomedical Resource Ontology
 
Resource Report
Resource Website
1+ mentions
Biomedical Resource Ontology (RRID:SCR_004443) BRO data or information resource, ontology, controlled vocabulary THIS RESOURCE IS NO LONGER IN SERVICE. Documented on April 27,2023. A controlled terminology of resources, which is used to improve the sensitivity and specificity of web searches. It includes ''resource_type'', ''area of research'', and ''activity''. It is under development by a number of NIH-funded researchers who have a combined interest in classification of biomedical resources. The biositemaps site is no longer available but the biomedical resource ontology is still available via bioportal Biomedical Resource Ontology (BRO). sitemap, resource type, owl, resource is listed by: BioPortal
is listed by: Biositemaps
is related to: Biositemaps
is related to: iBIOFind
is related to: bioDBcore
has parent organization: National Centers for Biomedical Computing
NIH THIS RESOURCE IS NO LONGER IN SERVICE nlx_143813 http://bioportal.bioontology.org/ontologies/1104
https://bioportal.bioontology.org/ontologies/BRO
SCR_004443 2026-02-17 10:00:43 3
Pathbase
 
Resource Report
Resource Website
10+ mentions
Pathbase (RRID:SCR_006141) Pathbase ontology, data access protocol, storage service resource, data or information resource, controlled vocabulary, image collection, database, service resource, software resource, web service, data repository, image repository Database of histopathology photomicrographs and macroscopic images derived from mutant or genetically manipulated mice. The database currently holds more than 1000 images of lesions from mutant mice and their inbred backgrounds and further images are being added continuously. Images can be retrieved by searching for specific lesions or class of lesion, by genetic locus, or by a wide set of parameters shown on the Advanced Search Interface. Its two key aims are: * To provide a searchable database of histopathology images derived from experimental manipulation of the mouse genome or experiments conducted on genetically manipulated mice. * A reference / didactic resource covering all aspects of mouse pathology Lesions are described according to the Pathbase pathology ontology developed by the Pathbase European Consortium, and are available at the site or on the Gene Ontology Consortium site - OBO. As this is a community resource, they encourage everyone to upload their own images, contribute comments to images and send them their feedback. Please feel free to use any of the SOAP/WSDL web services. (under development) histopathology, photomicrograph, macroscopic, mutant, genetically manipulated, pathology, transgenic, rodent, mpath ontology, mouse pathology ontology, skinbase, genotype, skin, gene, tissue, hair, mutant mouse strain, bio.tools is listed by: bio.tools
is listed by: Debian
is related to: Gene Ontology
has parent organization: University of Cambridge; Cambridge; United Kingdom
is parent organization of: Mouse Pathology Ontology
Lesion, Mutant mouse strain, Inbred mouse strain North American Hair Research Society ;
Ellison Medical Foundation ;
European Union QLRI-1999-00320;
European Union LSHG-CT-2006-037188;
NCI CA089713;
NCRR RR17436;
NIH AR49288
PMID:20587689
PMID:15623888
PMID:14681470
Except where otherwise noted, Creative Commons Attribution-NonCommercial-ShareAlike License, v3 Unported, Images on the database remain the property of the persons generously allowing their images to be used and are acknowledged within each record. Images should not be modified, Reproduced or disseminated without the express permission of the submitter. biotools:pathbase, nlx_151637 https://bio.tools/pathbase SCR_006141 Pathbase - European mutant mouse pathology database 2026-02-17 10:01:04 11
Human Reference Protein Interactome Project
 
Resource Report
Resource Website
10+ mentions
Human Reference Protein Interactome Project (RRID:SCR_015670) HuRI web application, data or information resource, project portal, database, software resource, portal Project portal for the Human Reference Protein Interactome Project, which aims generate a first reference map of the human protein-protein interactome network by identifying binary protein-protein interactions (PPIs). It achieves this by systematically interrogating all pairwise combinations of predicted human protein-coding genes using proteome-scale technologies. protein interactome, protein-protein interaction, ppi, pairwise combination, proteome, human reference NHGRI R01/U01HG001715;
NHGRI P50HG004233;
NHLBI U01HL098166;
NHLBI U01HL108630;
NCI U54CA112962;
NCI R33CA132073;
NIH RC4HG006066;
NICHD ARRA R01HD065288;
NICHD ARRA R21MH104766;
NICHD ARRA R01MH105524;
NIMH R01MH091350;
NSF CCF-1219007;
NSERC RGPIN-2014-03892
PMID:25416956 Freely Available, Free, Available for download SCR_015670 HuRI: The Human Reference Protein Interactome Mapping Project 2026-02-17 10:03:18 20
Kids First Data Resource Portal
 
Resource Report
Resource Website
1+ mentions
Kids First Data Resource Portal (RRID:SCR_016493) DRP organization portal, storage service resource, data or information resource, topical portal, disease-related portal, database, service resource, portal, data repository Portal for analysis and interpretation of pediatric genomic and clinical data to advance personalized medicine for detection, therapy, and management of childhood cancer and structural birth defects. For patients, researchers, and clinicians to create centralized database of well curated clinical and genetic sequence data from patients with childhood cancer or structural birth defects. pediatric, genomic, clinical, disease, data, children, cancer, birth, defect, analysis is recommended by: National Library of Medicine pediatric cancer, birth defect the Common Fund’s Gabriella Miller Kids First Pediatric Research Program ;
NIH
Restricted SCR_016553 https://commonfund.nih.gov/kidsfirst
https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs001168.v1.p1
https://commonfund.nih.gov/kidsfirst
SCR_016493 Data Resource Portal 2026-02-17 10:03:02 3
BeWith
 
Resource Report
Resource Website
BeWith (RRID:SCR_016573) BeWith data analysis software, software application, data processing software, software resource Software tool for discovering relationships between cancer modules via integrated analysis of mutual exclusivity, co-occurrence and functional interactions. clustering, framework, identify, module, mutation, interaction, pattern, gene, cancer Naomi Kadar award ;
NIH
DOI:10.1371/journal.pcbi.1005695 Free, Available for download, Freely available SCR_016573 BEtweenWITHin, Between-Within, BeWith 2026-02-17 10:02:43 0
Manhattan HIV Brain Bank
 
Resource Report
Resource Website
1+ mentions
Manhattan HIV Brain Bank (RRID:SCR_010520) MHBB biomaterial supply resource, tissue bank, brain bank, material resource Biorepository of tissues and fluids relevant for the neurologic, neuropsychologic, psychiatric and neuropathologic manifestations of HIV infection, linked to medical records and an on-going clinical trial for research use by the scientific community. The MHBB conducts a longitudinal, observational study that follows a group of HIV-infected individuals who have agreed to be fluid and organ donors for the purposes of AIDS research. They are currently the largest, multidisciplinary neuroAIDS cohort in New York City, the epicenter of the US HIV epidemic. Research participants undergo regular neurologic, neuropsychologic, and psychiatric evaluations, and provide body fluid samples that are linked to clinical information. Upon their demise, study participants become organ donors. This program has supplied clinical information, tissue, and fluid samples to over 70 qualified AIDS researchers across America, Europe and Australia. In fulfilling its resource mission, the MHBB functions as part of the National NeuroAIDS Tissue Consortium (NNTC). MHBB provides a means by which people living with HIV can be engaged in the struggle to improve our knowledge about HIV infection and the damage it causes to the body. human immunodeficiency virus, aids, body fluid, organ, clinical information, tissue, brain, liver disease, liver disorder, aids pathogenesis, clinical data is listed by: One Mind Biospecimen Bank Listing
is related to: One Mind Biospecimen Bank Listing
is related to: National NeuroAIDS Tissue Consortium
has parent organization: Icahn School of Medicine at Mount Sinai; New York; USA
Human immunodeficiency virus, AIDS, Liver disease, Liver disorder NIH nlx_19658 http://www.mountsinai.org/Research/Centers%20Laboratories%20and%20Programs/Manhattan%20HIV%20Brain%20Bank SCR_010520 2026-02-17 10:01:30 1
HOMER
 
Resource Report
Resource Website
5000+ mentions
HOMER (RRID:SCR_010881) HOMER software application, data processing software, data analysis software, software resource, sequence analysis software Software tools for Motif Discovery and next-gen sequencing analysis. Used for analyzing ChIP-Seq, GRO-Seq, RNA-Seq, DNase-Seq, Hi-C and numerous other types of functional genomics sequencing data sets. Collection of command line programs for unix style operating systems written in Perl and C++. motif, discovery, next, generation, sequencing, analysis, genomic, data is listed by: OMICtools
is related to: findMotif.pl
has parent organization: University of California at San Diego; California; USA
NURSA consortium grant ;
NIH HC088093;
NIDDK DK063491;
NCI CA52599;
NIGMS P50 GM081892;
Foundation Leducq Transatlantic Network Grant
PMID:20513432 OMICS_00483 http://biowhat.ucsd.edu/homer/index.html SCR_010881 HOMER, Hypergeometric Optimization of Motif EnRichment, Homer, Homer v4.5 2026-02-17 10:01:53 5370
TGD
 
Resource Report
Resource Website
10+ mentions
TGD (RRID:SCR_012803) TGD, TGD LOCUS, TGD REF narrative resource, data or information resource, production service resource, analysis service resource, database, service resource, data analysis service, wiki TGD Wiki is a user-updatable database of information about the Tetrahymena thermophila genome sequence determined at The Institute for Genomic Research (TIGR). TGD Wiki provides information on the genome, genes, and proteins of Tetrahymena collected from the scientific literature, research community and many other resources. In order to keep the information in our database as current as possible, we will soon be inviting the members of the Tetrahymena community to add and update these annotations to reflect published research. TGD Wiki currently offers the following features: * Free, unrestricted read access to all available data * Sequence and annotation data for 24,725 genes (TIGR v.2008) * GBrowse genome browser with links to and from each gene page (TIGR v.2006) * BLAST searching of the TIGR gene models and genome sequence (TIGR v.2006) Tetrahymena Genome Database (TGD) Wiki began in 2004 at Stanford University using the schema and programs of its parent project, Saccharomyces Genome Database. TGD Wiki is now a collaboration between Bradley University, Stanford University, and Cornell University. As we begin TGD Wiki at its new home at Bradley University, the TGD Wiki database contains the following data from TGD: * Gene Names and Aliases * Gene Descriptions * Gene Ontology (GO) Annotations * Homologs (similar genes in selected organisms) * Protein Domains * Associated Literature * Paragraphs (longer, free-text descriptions of gene function, structure, and significance) * Coding and Protein Sequences We have updated the following fields to match the newest gene model sequences (TIGR v.2008): Coding and Protein Sequences, Protein Domains and Gene Descriptions. We will also be recalculating the GO Annotations (IEA evidence code) and Homologs as part of our effort to keep the annotations in TGD Wiki as current as possible. We will be relying on members of the Tetrahymena community to maintain high-quality, updated annotations in the remainder of the fields using our annotation interface. Also setting up new database superdb - for unpublished data Look at Ciliate.org for news on this and other new databases ciliate has parent organization: Bradley University; Illinois; USA NIH nlx_75432 SCR_012803 TGD REF, Tetrahymena Genome Database, TGD Wiki, TGD LOCUS, Tetrahymena Genome Database Wiki 2026-02-17 10:02:18 14
Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB)
 
Resource Report
Resource Website
5000+ mentions
Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) (RRID:SCR_012820) RCSB PDB storage service resource, data or information resource, database, service resource, data repository Collection of structural data of biological macromolecules. Database of information about 3D structures of large biological molecules, including proteins and nucleic acids. Users can perform queries on data and analyze and visualize results. 3-dimensional, annotation, molecule, nucleic acid, protein, visualization, sequence, function, macromolecule, ligand, model, dna, x-ray crystallography, ribosome, structure, oncogene, nucleic acids, molecular structure, cryomicroscopy, gold standard, FASEB list is used by: Structural Genomics Consortium
is used by: Ligand Expo
is used by: DARC - Database for Aligned Ribosomal Complexes
is used by: FireDB
is used by: Protein Data Bank Bind Database
is used by: Protein Data Bank Site
is used by: NIF Data Federation
is used by: ChannelPedia
is used by: MobiDB
is used by: BALBES
is used by: Structural Antibody Database
is used by: BioLiP
is recommended by: NIDDK Information Network (dkNET)
is recommended by: National Library of Medicine
is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases
is listed by: re3data.org
is affiliated with: EMDataResource.org
is affiliated with: ConSurf Database
is related to: pdb-data
is related to: PDB2MultiGif
is related to: GlyProt
is related to: pdb-care
is related to: pdb2linucs
is related to: GlyVicinity
is related to: GlyTorsion
is related to: GlySeq
is related to: AffinDB
is related to: StatAlign
is related to: Community Structure-Activity Resource
is related to: Binding MOAD
is related to: ConSurf Database
is related to: glycosciences.de
is related to: DOMINE: Database of Protein Interactions
is related to: Jenalib: Jena Library of Biological Macromolecules
is related to: SynSysNet
is related to: EMDataResource.org
is related to: PDBe - Protein Data Bank in Europe
is related to: TFinDIT
is related to: HOLLOW
is related to: ccPDB - Compilation and Creation of datasets from PDB
is related to: DOMMINO - Database Of MacroMolecular INteractiOns
is related to: InterEvol database
is related to: Polbase
is related to: PoSSuM
is related to: ProtChemSI
is related to: RNA CoSSMos
is related to: PDBsum
is related to: Worldwide Protein Data Bank (wwPDB)
is related to: canSAR
is related to: CAPS Database
is related to: Dockground: Benchmarks, Docoys, Templates, and other knowledge resources for DOCKING
is related to: Combinatorial Extension (CE)
is related to: Metalloprotein Site Database
is related to: PDBj - Protein Data Bank Japan
is related to: Statistical Torsional Angles Potentials of NMR Refinement Database
is related to: Metalloprotein Ligand Interaction Database
is related to: CARP
is related to: PDBTM
is related to: RNA FRABASE - RNA FRAgments search engine and dataBASE
is related to: AmiGO
is related to: ConsensusPathDB
is related to: Biological Magnetic Resonance Data Bank (BMRB)
is related to: DNA DataBank of Japan (DDBJ)
is related to: FlyMine
is related to: NCBI Protein Database
is related to: NCBI Nucleotide
is related to: FunTree
is related to: IndelFR - Indel Flanking Region Database
is related to: NMR Restraints Grid
is related to: Enzyme Structures Database
is related to: Electron Microscopy Data Bank at PDBe (MSD-EBI)
is related to: Worldwide Protein Data Bank (wwPDB)
is related to: DNA DataBank of Japan (DDBJ)
is related to: PDBe - Protein Data Bank in Europe
is related to: MINAS - Metal Ions in Nucleic AcidS
is related to: PDBj - Protein Data Bank Japan
has parent organization: University of California at San Diego; California; USA
has parent organization: Rutgers University; New Jersey; USA
is parent organization of: RCSB PDB Software Tools
is parent organization of: Protein Data Bank Markup Language
is parent organization of: Ligand Expo
works with: CellPhoneDB
NIH ;
DOE ;
NSF DBI-1338415
PMID:12037327 Public, Acknowledgement requested nif-0000-00135, SCR_017379 http://www.rcsb.org
http://www.pdb.org
http://www.rcsb.org/pdb/ SCR_012820 RCSB, Research Collaboratory for Structural Bioinformatics Protein Data Bank, The Protein Data Bank, PDB, Protein Databank, RCSB Protein Data Bank, Protein Data Bank 2026-02-17 10:02:18 9870
Group Sparse Canonical Correlation Analysis
 
Resource Report
Resource Website
Group Sparse Canonical Correlation Analysis (RRID:SCR_014977) GSCCA data analysis software, software application, data processing software, software resource Group Sparse Canonical Correlation Analysis is a method designed to study the mutual relationship between two different types of data. group analysis, correlation analysis has parent organization: NeuroImaging Tools and Resources Collaboratory (NITRC) NSF ;
NIH
Available for download SCR_014977 2026-02-17 10:02:46 0
Cerebrovascular Disease Knowledge Portal
 
Resource Report
Resource Website
10+ mentions
Cerebrovascular Disease Knowledge Portal (RRID:SCR_015628) CDKP data or information resource, topical portal, disease-related portal, database, portal Portal enables browsing, searching, and analysis of human genetic information linked to cerebrovascular disease and related traits, while protecting the integrity and confidentiality of the underlying data. human, genetic, information, cerebrovascular, disease, data, knowledge is listed by: NIDDK Information Network (dkNET)
has parent organization: Massachusetts General Hospital Labs and Facilities
cerebrovascular disease NINDS ;
NIH ;
Accelerating Medicines Partnership in Type 2 Diabetes
Free, Available for download SCR_016535 SCR_015628 Cerebrovascular Disease Knowledge Portal (CDKP) 2026-02-17 10:03:17 14
BepiPred-2.0
 
Resource Report
Resource Website
1+ mentions
BepiPred-2.0 (RRID:SCR_018499) data access protocol, software application, standalone software, production service resource, analysis service resource, service resource, software resource, web service Sequential B-Cell Epitope Predictor. Web server predicts B-cell epitopes from protein sequence. Sequence-based B-cell epitope prediction using conformational epitopes. Sequences of protein of interest should be in fasta format. BepiPred 2.0 is available as stand alone software package, with same functionality as web service., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. Sequential predictor, B cell epitope, B cell epitope predictor, B-cell epitope, protein sequence, protein, epitope, sequence has parent organization: Technical University of Denmark; Lyngby; Denmark NIH HHSN272201200010C PMID:28472356
PMID:16635264
THIS RESOURCE IS NO LONGER IN SERVICE http://www.cbs.dtu.dk/services/BepiPred-1.0/ SCR_018499 BepiPred-1.0, BepiPred 2026-02-17 10:03:05 4
SEDFIT
 
Resource Report
Resource Website
10+ mentions
SEDFIT (RRID:SCR_018365) data analysis software, software application, data processing software, software resource Software tool for analytical ultracentrifugation developed by Dynamics of Macromolecular Assembly group of Laboratory of Cellular Imaging and Macromolecular Biophysics, National Institute of Biomedical Imaging and Bioengineering, NIH. Used for biophysical analysis of macromolecular assembly. Analytical ultracentrifugation, biophysical analysis, macromolecular assembly, data, analysis, National Institute of Biomedical Imaging and Bioengineering is listed by: SoftCite NIH Free, Available for download, Freely available SCR_018365 SEDFIT version 14.7g 2026-02-17 10:03:28 25
Urinary Stone Disease Research Network
 
Resource Report
Resource Website
Urinary Stone Disease Research Network (RRID:SCR_019059) USDRN data or information resource, topical portal, portal, disease-related portal Portal for research on urinary stones in adults and children in order to learn more about who forms kidney stones, treatments and prevention. Network comprises of experts including adult and pediatric urologists, adult and pediatric nephrologists, pediatricians, emergency department physicians, clinical trialists, nutritionists, behavioral scientists, and radiologists. Duke Clinical Research Institute is Scientific Data Research Center and with clinical sites including University of Pennsylvania Children Hospital of Philadelfia, University of Texas Southwestern Medical Center, University of Washington, Washington University in St. Louis, work together in planning, executing, and analyzing results from USDRN studies. Urinary stone, kidney stone, kidney, treatment, prevention, urologist, nephrologist, pediatrician, clinical trial, data is related to: Duke University School of Medicine; North Carolina; USA
is related to: University of Pennsylvania; Philadelphia; USA
is related to: University of Texas System; Texas; USA
is related to: Washington University in St. Louis; Missouri; USA
is related to: University of Washington; Seattle; USA
Kidney stones NIH ;
NIDDK
Free, Freely available SCR_019059 2026-02-17 10:03:54 0
HyPhy
 
Resource Report
Resource Website
1000+ mentions
HyPhy (RRID:SCR_016162) software application, data processing software, data analysis software, sequence analysis software, software resource, software toolkit Open source software package for comparative sequence analysis using stochastic evolutionary models. Used for analysis of genetic sequence data in particular the inference of natural selection using techniques in phylogenetics, molecular evolution, and machine learning. analysis, genetic, sequence, multiply, alignment, rate, pattern, data, evolution, platform, python, r, bio.tools is listed by: Debian
is listed by: bio.tools
is listed by: OMICtools
NSF DBI-0096033;
NSF DEB-9996118;
NIH R01 AI47745;
NIH U01 AI43638;
University of California Universitywide AIDS Research Program IS02-SD-701;
University of California ;
San Diego Center for AIDS Research/NIAID Developmental Award 2 P30 AI36214;
NIGMS R01
PMID:15509596 Free, Available for download, Freely available SCR_016271, biotools:HyPhy, OMICS_04235 https://sources.debian.org/src/hyphy-pt/
https://veg.github.io/hyphy-site/
https://github.com/veg/hyphy
https://bio.tools/HyPhy
SCR_016162 HyPhy:Hypothesis Testing using Phylogenies, Hyphy-pt 2026-02-17 10:02:39 1497
GOTrack
 
Resource Report
Resource Website
1+ mentions
GOTrack (RRID:SCR_016399) data access protocol, data or information resource, database, software resource, web service Open source web-based system and database that provides access to historical records and trends in the Gene Ontology (GO) and GO annotations (GOA). Used for monitoring changes in the Gene Ontology and their impact on genomic data analysis. database, system, access, historical, monitor, record, gene, genomic, data, analysis, ontology, annotation, bioinformatics is listed by: OMICtools
is related to: University of British Columbia; British Columbia; Canada
NIH MH111099;
NSERC Discovery Grant ;
Canadian Foundation for Innovation infrastructure ;
CIHR
DOI:10.1101/320861 Free, Available for download, Freely available https://github.com/PavlidisLab/gotrack
https://omictools.com/gotrack-tool
SCR_016399 2026-02-17 10:02:41 1
iMITS
 
Resource Report
Resource Website
iMITS (RRID:SCR_016552) iMITS data or information resource, catalog, database This resource has been replaced by GenTaR. Software tool for the planning of all IMPC mouse production. Allows IMPC production centers to record the progress of mouse production, cre-excision and to summarise the progress of phenotype data collection and transfer to the IMPC DCC. Stores all the mutation molecular structures made for the IKMC, catalogs of all IKMC products. international, tracking, system, mouse, production, data, store, catalog, phenotype, collection, mutation, molecular, structure, IKMC, IMPC is affiliated with: International Mouse Phenotyping Consortium (IMPC)
is related to: GenTaR
NIH KOMP2;
European Union 223592
Restricted SCR_016552 international Micro Injection Tracking System 2026-02-17 10:03:02 0
MotionCor2
 
Resource Report
Resource Website
100+ mentions
MotionCor2 (RRID:SCR_016499) data analysis software, software application, data processing software, software resource Software tool for anisotropic correction of beam-induced motion for improved cryo-electron microscopy. Used to describe the sample motion as a local deformation that varies smoothly throughout the exposure. A program running on Linux. anisotropic, correction, beam, induced, motion, cryo, electron, microscopy, exposure, data has parent organization: University of California at San Francisco; California; USA NIH R01 GM031627;
NIGMS P01 GM111126
PMID:28250466 Restricted http://msg.ucsf.edu/em/software/motioncor2.html SCR_016499 MotionCor 2026-02-17 10:03:25 172
RNA22
 
Resource Report
Resource Website
100+ mentions
RNA22 (RRID:SCR_016507) RNA22 software application, data processing software, data analysis software, software resource, sequence analysis software Software tool as a pattern based algorithm for detecting microRNA binding sites and their corresponding microRNA and mRNA complexes. Allows interactive exploration and visualization of miRNA target predictions. Permits link-out to external expression repositories and databases. pattern, based, detecting, microRNA, binding, site, complex, sequence, genome, analysis, FASEB list is listed by: OMICtools A Star ;
Singapore ;
NIDDK DK04763;
NIH AI54973
Free, Available for download, Freely available SCR_016507 RiboNucleic Acid 22 2026-02-17 10:03:25 192
TB PORTALS
 
Resource Report
Resource Website
10+ mentions
TB PORTALS (RRID:SCR_016594) organization portal, storage service resource, data or information resource, topical portal, consortium, disease-related portal, service resource, portal, data repository Web based open access platform for global drug resistant tuberculosis data sharing and analysis. The NIAID TB Portals program and consortium of clinicians and scientists from countries with a heavy burden of TB, especially drug resistant TB, to collect TB data. collect, data, sharing, analysis, tuberculosis, global, bio.tools is listed by: NIAID
is listed by: bio.tools
is listed by: Debian
tuberculosis NIH DOI:10.1128/JCM.01013-17 Free, Freely available r3d100013925, biotools:TB_Portals https://bio.tools/TB_Portals
https://doi.org/10.17616/R31NJN8L
SCR_016594 2026-02-17 10:02:43 12

Can't find your Tool?

We recommend that you click next to the search bar to check some helpful tips on searches and refine your search firstly. Alternatively, please register your tool with the SciCrunch Registry by adding a little information to a web form, logging in will enable users to create a provisional RRID, but it not required to submit.

Can't find the RRID you're searching for? X
X
  1. SPARC Anatomical Working Group Resources

    Welcome to the SPARC SAWG Resources search. From here you can search through a compilation of resources used by SPARC SAWG and see how data is organized within our community.

  2. Navigation

    You are currently on the Community Resources tab looking through categories and sources that SPARC SAWG has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.

  3. Logging in and Registering

    If you have an account on SPARC SAWG then you can log in from here to get additional features in SPARC SAWG such as Collections, Saved Searches, and managing Resources.

  4. Searching

    Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:

    1. Use quotes around phrases you want to match exactly
    2. You can manually AND and OR terms to change how we search between words
    3. You can add "-" to terms to make sure no results return with that term in them (ex. Cerebellum -CA1)
    4. You can add "+" to terms to require they be in the data
    5. Using autocomplete specifies which branch of our semantics you with to search and can help refine your search
  5. Collections

    If you are logged into SPARC SAWG you can add data records to your collections to create custom spreadsheets across multiple sources of data.

  6. Facets

    Here are the facets that you can filter the data by.

  7. Further Questions

    If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.