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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
CELLO Resource Report Resource Website 500+ mentions |
CELLO (RRID:SCR_011968) | CELLO | data analysis service, service resource, production service resource, analysis service resource | A subCELlular LOcalization predictor based on a multi-class support vector machine (SVM) classification system. CELLO uses 4 types of sequence coding schemes: the amino acid composition, the di-peptide composition, the partitioned amino acid composition and the sequence composition based on the physico-chemical properties of amino acids. They combine votes from these classifiers and use the jury votes to determine the final assignment. | dna, protein, proteomic, genomic |
is used by: Cello2Go is listed by: OMICtools has parent organization: National Chiao Tung University; Hsinchu; Taiwan |
PMID:15096640 | Acknowledgement requested | OMICS_01618 | SCR_011968 | CELLO: subCELlular LOcalization predictor | 2026-02-11 10:58:28 | 957 | ||||||
|
Euk-mPLoc Resource Report Resource Website 50+ mentions |
Euk-mPLoc (RRID:SCR_011971) | Euk-mPLoc | data analysis service, service resource, production service resource, analysis service resource | Data analysis service for predicting subcellular localization of eukaryotic proteins including those with multiple sites. Euk-mPLoc covers 22 eukaryotic subcellular locations. | subcellular location |
is listed by: OMICtools has parent organization: Cell-PLoc |
PMID:17397210 | Acknowledgement requested | OMICS_01621 | SCR_011971 | Euk-mPLoc 2.0: Predicting subcellular localization of eukaryotic proteins including those with multiple sites | 2026-02-11 10:58:31 | 75 | ||||||
|
HomoloGene Resource Report Resource Website 100+ mentions |
HomoloGene (RRID:SCR_002924) | HomoloGene | service resource, data or information resource, database | Automated system for constructing putative homology groups from complete gene sets of wide range of eukaryotic species. Databse that provides system for automatic detection of homologs, including paralogs and orthologs, among annotated genes of sequenced eukaryotic genomes. HomoloGene processing uses proteins from input organisms to compare and sequence homologs, mapping back to corresponding DNA sequences. Reports include homology and phenotype information drawn from Online Mendelian Inheritance in Man, Mouse Genome Informatics, Zebrafish Information Network, Saccharomyces Genome Database and FlyBase. | homolog, paralog, ortholog, genome, gene, protein, protein alignment, phenotype, conserved domain, homology, amino acid sequence, cell, dna, gold standard |
is used by: NIF Data Federation is used by: Nowomics is used by: MitoMiner is listed by: OMICtools is listed by: re3data.org is related to: OMIM is related to: Mouse Genome Informatics (MGI) is related to: Zebrafish Information Network (ZFIN) is related to: SGD is related to: FlyBase is related to: ProbeMatchDB 2.0 is related to: Biomine is related to: Consensus CDS has parent organization: NCBI |
PMID:23193264 | Free, Freely availalbe | nif-0000-02975, r3d100010781, OMICS_01544 | http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=homologene https://doi.org/10.17616/R3889F |
SCR_002924 | NCBI HomoloGene | 2026-02-11 10:56:34 | 437 | |||||
|
ChIPBase Resource Report Resource Website 100+ mentions |
ChIPBase (RRID:SCR_005404) | ChIPBase | data or information resource, database | A database for decoding transcription factor binding maps, expression profiles and transcriptional regulation of long non-coding RNAs (lncRNAs, lincRNAs), microRNAs, other ncRNAs (snoRNAs, tRNAs, snRNAs, etc.) and protein-coding genes from ChIP-Seq data. ChIPBase currently includes millions of transcription factor binding sites (TFBSs) among 6 species. ChIPBase provides several web-based tools and browsers to explore TF-lncRNA, TF-miRNA, TF-mRNA, TF-ncRNA and TF-miRNA-mRNA regulatory networks., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | chip-seq, gene, rna, microrna, long non-coding rna, non-coding, transcription factor binding site, protein, transcriptional regulation, annotation, regulatory element, transcription factor, genome, network, FASEB list |
is listed by: OMICtools has parent organization: Sun Yat-sen University; Guangdong; China |
THIS RESOURCE IS NO LONGER IN SERVICE | OMICS_00527 | SCR_005404 | 2026-02-11 10:57:08 | 145 |
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