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http://text0.mib.man.ac.uk/software/mldic/
THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 9, 2022. System that retrieves relevant UniProt IDs from BioThesaurus entries using a soft string matching algorithm.
Proper citation: Smart Dictionary Lookup (RRID:SCR_000568) Copy
http://www.russelllab.org/miRNAs/
Data set of 2003 and 2005 miRNA-Target predictions for Drosophila miRNAs.
Proper citation: miRNA (RRID:SCR_010849) Copy
http://genie.weizmann.ac.il/pubs/mir07/mir07_data.html
Catalogs of predicted microRNA targets in worm (based on ce6 genome assembly), fly (dm3), mouse (mm9) and human (hg18). We follow standard seed parameter settings and consider seeds of length 6-8 bases, beginning at position 2 of the microRNA. No mismatches or loops are allowed, but a single G:U wobble is allowed in 7- or 8-mers. In genes missing a 3' UTR annotation, 500 bp (fly), 800 bp (human and mouse) or 300 bp (worm) downstream of the annotated end of the coding sequence were used as the predicted UTR. For each organism, a catalog with zero flank and with a flank of 3 and 15 bases upstream and downstream.
Proper citation: PITA (RRID:SCR_010853) Copy
http://www.stanford.edu/~rnusse/pathways/targets.html
A list of target genes of Wnt/beta-catenin signaling. Suggestions for additions are welcome. Direct targets are defined as those with Tcf binding sites and demonstrating that these sites are important.
Proper citation: Target genes of Wnt/beta-catenin signaling (RRID:SCR_007022) Copy
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