Searching the RRID Resource Information Network
Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.
SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
ConDeTri Resource Report Resource Website 50+ mentions |
ConDeTri (RRID:SCR_011838) | ConDeTri | software resource | Software tool as content dependent read trimmer for Illumina data. Content dependent read trimming software for Illumina/Solexa sequencing data. | Solexa sequencing data, Illumina data, data read trimming, read trimmer, sequencing data, |
is listed by: OMICtools is listed by: bio.tools is listed by: Debian |
PMID:22039460 | Free, Available for download, Freely available | OMICS_01085, biotools:condetri | https://bio.tools/condetri https://sources.debian.org/src/condetri/ https://github.com/linneas/condetri/ |
SCR_011838 | 2026-02-14 02:02:28 | 66 | ||||||
|
University of Texas at El Paso Resource Report Resource Website |
University of Texas at El Paso (RRID:SCR_011718) | UTEP | university | UTEP officially opened in the fall of 1914 and is the second oldest institution in The University of Texas System. | undergraduate, graduate, master's, doctoral, phD, institution, university |
has parent organization: University of Texas System; Texas; USA is parent organization of: UTEP BSL 3 Laboratory is parent organization of: University of Texas El Paso Analytical Cytology Core Facility is parent organization of: University of Texas El Paso Bioinformatics Computing Laboratory is parent organization of: UTEP Biomolecule Analysis Core Facility is parent organization of: UTEP Cell Culture and High Throughput Screening Core Facility is parent organization of: UTEP DNA Analysis Core Facility is parent organization of: UTEP Statistical Consulting Laboratory |
nlx_156106, Wikidata:Q2093110, ISNI:0000 0001 0668 0420, grid.267324.6 | https://ror.org/04d5vba33 | SCR_011718 | University of Texas at El Paso | 2026-02-14 02:02:04 | 0 | |||||||
|
Quake Resource Report Resource Website 50+ mentions |
Quake (RRID:SCR_011839) | Quake | software resource | A software package to correct substitution sequencing errors in experiments with deep coverage (e.g. >15X), specifically intended for Illumina sequencing reads. |
is listed by: OMICtools has parent organization: University of Maryland; Maryland; USA |
OMICS_01106 | SCR_011839 | 2026-02-14 02:02:15 | 80 | ||||||||||
|
University of Texas at San Antonio; Texas; USA Resource Report Resource Website 1+ mentions |
University of Texas at San Antonio; Texas; USA (RRID:SCR_011719) | UTSA | university | Public research university in San Antonio, Texas. |
is parent organization of: UTSA Engineering Core is parent organization of: GENESIS Neural Database and Modelers Workspace is parent organization of: Neuroscientists Talk Shop is parent organization of: General Neural Simulation System is parent organization of: GEneral NEural SImulation System: The Neurospaces Project is parent organization of: University of Texas at San Antonio Laboratory of Professor Brenda Claiborne is parent organization of: Computer-Assisted Information Retrieval Service System for Music is parent organization of: EEGVIS is parent organization of: UTSA Biophysics Facility is parent organization of: UTSA Cellular and Tissue Engineering Laboratory is parent organization of: UTSA Computational Biology Initiative is parent organization of: UTSA Kleberg Advanced Microscopy Laboratory is parent organization of: University of Texas San Antonio Cell Analysis Core Facility is parent organization of: UTSA RCMI Computational Systems Biology Core is parent organization of: UTSA RCMI Nanotechnology and Human Health Core is parent organization of: University of Texas San Antonio Mass Spectrometry and Proteomics Core Facility is parent organization of: UTSA SNRP Image Analysis Core is parent organization of: UTSA SNRP Neurostatistics Core is parent organization of: UTSA X-ray Crystallography Laboratory is parent organization of: BCmicrO is parent organization of: UTSA RCMI Proteomics and Protein Biomarkers Cores is parent organization of: University of Texas at San Antonio Labs and Facilities is parent organization of: ExomePeak is parent organization of: NeuroManager is parent organization of: University of Texas at San Antonio Stem Cell Core Facility |
Wikidata:Q183170, grid.215352.2, ISNI:121845633, Crossref funder ID:100008634, nlx_67879 | https://ror.org/01kd65564 | SCR_011719 | UTSA | 2026-02-14 02:02:25 | 1 | ||||||||
|
SBEAMS Resource Report Resource Website 1+ mentions |
SBEAMS (RRID:SCR_011830) | SBEAMS | software resource | Software providing a framework for collecting, storing, and accessing data produced by a wide variety of experiments. | proteomics, microarray | is listed by: OMICtools | PMID:16756676 | OMICS_01011 | SCR_011830 | Systems Biology Experiment Analysis Management System | 2026-02-14 02:02:27 | 9 | |||||||
|
Circos Resource Report Resource Website 5000+ mentions |
Circos (RRID:SCR_011798) | Circos | software resource | A software package for visualizing data and information. It visualizes data in a circular layout - this makes Circos ideal for exploring relationships between objects or positions. | bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools is related to: JupiterPlot |
DOI:10.1101/gr.092759.109 | biotools:circos, OMICS_00932 | https://bio.tools/circos https://sources.debian.org/src/circos/ |
SCR_011798 | 2026-02-14 02:02:14 | 5084 | |||||||
|
Babraham Sierra Resource Report Resource Website 1+ mentions |
Babraham Sierra (RRID:SCR_011831) | software resource | Web based Laboratory Information Management System (LIMS) system which can be used to track samples and distribute results within small sequencing facility. Provides simple way to track samples within facility and return sequencing, mapping and QC results to users. | LIMS, Laboratory Information Management System, track samples, distribute results within small sequencing facility, track samples within facility and return sequencing, mapping and QC results, | has parent organization: Babraham Institute | GNU General Public License, v3 or later | OMICS_01014 | SCR_011831 | Sierra | 2026-02-14 02:02:15 | 6 | ||||||||
|
University of Technology at Sydney; New South Wales; Australia Resource Report Resource Website 1+ mentions |
University of Technology at Sydney; New South Wales; Australia (RRID:SCR_011711) | UTS | university | Public research university located in Sydney, Australia. |
is parent organization of: UTS Chemical Technologies Research Facility is parent organization of: UTS Microstructural Analysis Unit is parent organization of: University of Technology at Sydney Biosciences and Proteomics Technologies is parent organization of: University of Technology Sydney Microbial Imaging Core Facility |
nlx_153963, grid.117476.2, Wikidata:Q1145731, ISNI:0000 0004 1936 7611, Crossref funder ID:501100001775 | https://ror.org/03f0f6041 | SCR_011711 | University of Technology Sydney, University of Technology at Sydney | 2026-02-14 02:02:26 | 3 | ||||||||
|
G-compass Resource Report Resource Website 1+ mentions |
G-compass (RRID:SCR_011799) | G-compass | software resource | It visualizes evolutionarily conserved genomic regions between human and other 12 vertebrates based on original genome alignments pursuing higher coverage. | is listed by: OMICtools | OMICS_00934 | SCR_011799 | 2026-02-14 02:02:28 | 1 | ||||||||||
|
discovering-cse Resource Report Resource Website |
discovering-cse (RRID:SCR_011832) | discovering-cse | software resource | Software for discovering motifs that induce sequencing errors. | motif |
is listed by: OMICtools has parent organization: Google Code |
GNU General Public License, v3 | OMICS_01040 | SCR_011832 | Discovering Context-Specific Sequencing Errors | 2026-02-14 02:02:28 | 0 | |||||||
|
University of Tennessee; Tennessee; USA Resource Report Resource Website |
University of Tennessee; Tennessee; USA (RRID:SCR_011712) | UT | university | University of Tennessee System is comprised of campuses at Knoxville, Chattanooga, Pulaski and Martin; Health Science Center at Memphis; Space Institute at Tullahoma; and statewide Institute of Agriculture and Institute for Public Service. |
is parent organization of: University of Tennessee Health Science Center; Tennessee; USA is parent organization of: University of Tennessee Knoxville; Tennessee; USA |
nlx_14003 | SCR_011712 | University of Tennessee | 2026-02-14 02:02:03 | 0 | |||||||||
|
MT-Toolbox Resource Report Resource Website 1+ mentions |
MT-Toolbox (RRID:SCR_011833) | MT-Toolbox | software resource | A software package for building accurate ConSeqs from tagged reads. | is listed by: OMICtools | PMID:23995388 | BSD License | OMICS_01058 | SCR_011833 | Molecule Tag Toolbox | 2026-02-14 02:02:05 | 4 | |||||||
|
AlienTrimmer Resource Report Resource Website 50+ mentions |
AlienTrimmer (RRID:SCR_011835) | AlienTrimmer | software resource | Allows detecting and removing multiple alien sequences in both ends of sequence reads. | bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools |
PMID:23912058 | Free | biotools:alientrimmer, OMICS_01082 | https://bio.tools/alientrimmer | SCR_011835 | 2026-02-14 02:02:15 | 68 | ||||||
|
University of Texas at Tyler; Texas; USA Resource Report Resource Website |
University of Texas at Tyler; Texas; USA (RRID:SCR_011720) | university | Public university in Tyler, Texas. Founded in 1971, it is a part of the University of Texas System. |
is parent organization of: SRPDB is parent organization of: tmRNA Database |
Wikidata:Q212528, ISNI:0000 0001 0626 4654, nlx_48968, grid.267327.5 | https://ror.org/01azfw069 | SCR_011720 | UTT | 2026-02-14 02:02:14 | 0 | |||||||||
|
QTrim Resource Report Resource Website 1+ mentions |
QTrim (RRID:SCR_011842) | QTrim | software resource | A next generation sequence quality trimming tool. | is listed by: OMICtools | OMICS_01089 | SCR_011842 | 2026-02-14 02:02:28 | 6 | ||||||||||
|
Scythe Resource Report Resource Website 100+ mentions |
Scythe (RRID:SCR_011844) | Scythe | software resource | Scythe uses a Naive Bayesian approach to classify contaminant substrings in sequence reads. |
is listed by: OMICtools is listed by: Debian |
OMICS_01091 | https://sources.debian.org/src/scythe/ | SCR_011844 | Scythe - A Bayesian adapter trimmer | 2026-02-14 02:02:29 | 174 | ||||||||
|
SeqtrimNEXT Resource Report Resource Website 10+ mentions |
SeqtrimNEXT (RRID:SCR_011845) | SeqtrimNEXT | software resource | A customizable and distributed pre-processing software for NGS (Next Generation Sequencing) biological data.The old version for Sanger sequences, Seqtrim, has been discontinued. | bio.tools |
is listed by: OMICtools is listed by: bio.tools is listed by: Debian |
biotools:seqtrim, OMICS_01093 | https://bio.tools/seqtrim | SCR_011845 | Seqtrim | 2026-02-14 02:02:05 | 29 | |||||||
|
Oases Resource Report Resource Website 100+ mentions |
Oases (RRID:SCR_011896) | Oases | software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on February 28,2023. Software tool as de novo transcriptome assembler designed to produce transcripts from short read sequencing technologies, such as Illumina, SOLiD, or 454 in the absence of any genomic assembly. | bio.tools, transcriptome assembler |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools has parent organization: European Bioinformatics Institute |
DOI:10.1093/bioinformatics/bts094 | THIS RESOURCE IS NO LONGER IN SERVICE | biotools:oases, OMICS_01322 | https://bio.tools/oases | https://sources.debian.org/src/oases/ | SCR_011896 | 2026-02-14 02:02:29 | 289 | |||||
|
Rnnotator Resource Report Resource Website 10+ mentions |
Rnnotator (RRID:SCR_011897) | Rnnotator | software resource | Software designed to assemble Illumina single or paired-end reads. |
is listed by: OMICtools has parent organization: Brown University; Rhode Island; USA |
OMICS_01323 | SCR_011897 | 2026-02-14 02:02:15 | 24 | ||||||||||
|
STM Resource Report Resource Website |
STM (RRID:SCR_011898) | STM | software resource | A de novo transcriptome assembly from next-generation sequencing data. | is listed by: OMICtools | OMICS_01325 | SCR_011898 | 2026-02-14 02:02:30 | 0 |
Can't find your Tool?
We recommend that you click next to the search bar to check some helpful tips on searches and refine your search firstly. Alternatively, please register your tool with the SciCrunch Registry by adding a little information to a web form, logging in will enable users to create a provisional RRID, but it not required to submit.
Welcome to the SPARC SAWG Resources search. From here you can search through a compilation of resources used by SPARC SAWG and see how data is organized within our community.
You are currently on the Community Resources tab looking through categories and sources that SPARC SAWG has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.
If you have an account on SPARC SAWG then you can log in from here to get additional features in SPARC SAWG such as Collections, Saved Searches, and managing Resources.
Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:
If you are logged into SPARC SAWG you can add data records to your collections to create custom spreadsheets across multiple sources of data.
Here are the facets that you can filter the data by.
If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.
