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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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AutoHeadFix Resource Report Resource Website |
AutoHeadFix (RRID:SCR_021617) | software resource, source code | Software Python code for automated control of behavioural apparatus and imaging for mice in home cage environment.Part of Homecage Task Training and Mesoscale Imaging system. | Automated control, behavioural apparatus, imaging for mice, home cage environment, OpenBehavior |
is listed by: OpenBehavior is related to: Homecage Task Training and Mesoscale Imaging project |
DOI:10.7554/elife.55964 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/training-mesoscale-imaging/ | SCR_021617 | 2026-02-14 02:08:48 | 0 | ||||||||
|
craniobot Resource Report Resource Website |
craniobot (RRID:SCR_021609) | software resource, source code, software toolkit | Software tool as part of Craniobot system.Generates, sends, and receives commands to communicate with the Craniobot. | Software resource, OpenBehavior |
is listed by: OpenBehavior is related to: Craniobot project |
DOI:10.1038/s41598-018-37073-w | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/craniobot/ | SCR_021609 | craniobot | 2026-02-14 02:08:48 | 0 | |||||||
|
Automated Home-Cage Functional Imaging Resource Report Resource Website |
Automated Home-Cage Functional Imaging (RRID:SCR_021607) | software resource, source code | Software tool as part of Automated Home Cage Functional Imaging system. | Software resource, OpenBehavior |
is listed by: OpenBehavior is related to: Automated Home-Cage Functional Imaging project |
DOI:10.1038/ncomms11611 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/automated-home-cage-functional-imaging/ | SCR_021607 | 2026-02-14 02:08:21 | 0 | ||||||||
|
Scintillate Resource Report Resource Website |
Scintillate (RRID:SCR_021531) | software resource, source code | Open source graphical viewer for time series calcium imaging evaluation and pre-processing. | image acquisition, time series calcium imaging evaluation, calcium imaging, |
is listed by: OpenBehavior is related to: Scintillate project |
DOI:10.1016/j.jneumeth.2016.08.010 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/scintillate/ | SCR_021531 | 2026-02-14 02:08:48 | 0 | ||||||||
|
flyPAD Resource Report Resource Website 1+ mentions |
flyPAD (RRID:SCR_021522) | software resource, source code | FPGA code for running main board of flyPAD. Code written in VHDL using Quartus 2 web edition software. | FPGA code, running main board of flyPAD, VHDL, Quartus 2, OpenBehavior |
is listed by: OpenBehavior is related to: flyPAD project |
DOI:10.1038/ncomms5560 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/optopad-and-flypad/ | SCR_021522 | 2026-02-14 02:08:21 | 1 | ||||||||
|
pyOS-5 Resource Report Resource Website |
pyOS-5 (RRID:SCR_022336) | software resource, source code | Operant Box code | OpenBehavior, neurophysiology |
is listed by: OpenBehavior is related to: pyOS-5 project |
DOI:10.1038/s41598-021-01717-1 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/pyos-5/ | SCR_022336 | 2026-02-14 02:08:16 | 0 | ||||||||
|
Argus Resource Report Resource Website 1+ mentions |
Argus (RRID:SCR_021585) | data or information resource, software resource, portal, project portal | Portal provides software tool for analysis and quantification of both single and socially interacting zebrafish. Software data extraction and analysis tool built in open source R language for tracking zebrafish behavior. | Analysis, quantification, socially interacting zebrafish, OpenBehavior |
is listed by: OpenBehavior is listed by: SoftCite is related to: Argus |
DOI:10.3758/s13428-018-1083-y | Free, Freely available | SCR_021619 | SCR_021585 | 2026-02-14 02:05:21 | 1 | ||||||||
|
MouseMove project Resource Report Resource Website |
MouseMove project (RRID:SCR_021581) | data or information resource, portal, project portal | Portal provides MouseMove software system used to analyze Open Field behavior of mice after experimental stroke to show reduced locomotor activity and to quantify laterality deficits. System is used in combination with open source program ImageJ and MTrack2 plugin to analyze pre recorded Open Field test video. System has two downloadable components, ImageJ macro and separate program with custom built MouseMove GUI. ImageJ is used to subtract background video from experiment and create image of animals total trajectory. MouseMove GUI then completes detailed analysis of movement patterns, measuring fractional time spent stationary, distance traveled, speed mean and various details of laterality. | Open Field behavior analysis, mice after experimental stroke, reduced locomotor activity, quantify laterality deficits, OpenBehavior |
is listed by: OpenBehavior is related to: MouseMove |
DOI:10.1038/srep16171 | Free, Freely available | SCR_021581 | MouseMove system | 2026-02-14 02:05:47 | 0 | ||||||||
|
Ratcave project Resource Report Resource Website |
Ratcave project (RRID:SCR_021555) | data or information resource, portal, project portal | Portal provides open source, cross platform Python library that adds 3D stimulus support to all OpenGL based 2D Python stimulus libraries. Ratcave comes with resources including basic 3D object primitives and wide range of 3D light effects. Intuitive object oriented interface allows for all objects, which include meshes, lights, and cameras, can be repositioned, rotated, and scaled. | Cognitive psychology, stimuli to subjects, response record, Python, 3D graphics library, OpenBehavior |
is listed by: OpenBehavior is related to: Ratcave |
DOI:10.3758/s13428-019-01245-x | Free, Freely available | SCR_021555 | Ratcave | 2026-02-14 02:05:44 | 0 | ||||||||
|
Automated Classification of Self-grooming in Mice project Resource Report Resource Website 1+ mentions |
Automated Classification of Self-grooming in Mice project (RRID:SCR_021597) | data or information resource, portal, project portal | Portal provides protocol that implements JAABA, open source machine learning based behavior detection system; motr, open-source mouse trajectory tracking software; and bonsai, open source system capable of streaming and recording video. Together they use these tools to process videos of mice performing grooming behaviors in variety of behavioral setups. | grooming behavior, behavior detection protocol, JAABA behavior detection system, motr mouse trajectory tracking software, bonsai streaming and recording video, OpenBehavior | is listed by: OpenBehavior | DOI:10.1016/j.jneumeth.2017.05.026 | Free, Freely available | SCR_021597 | Automated Classification of Self-grooming in Mice | 2026-02-14 02:05:44 | 1 | ||||||||
|
MedParse Resource Report Resource Website |
MedParse (RRID:SCR_021528) | software resource, data processing software, software application | Software tool to read MedPC data into Python and Matlab. MedPC code for saving precise times of behavioral events and MatLab and Python functions to convert MedPC data into time event codes. | Read MedPC data, Python, Matlab, behavioral events, time event codes, OpenBehavior |
is listed by: OpenBehavior is related to: MedParse project |
Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/medparse/ | SCR_021528 | 2026-02-14 02:05:47 | 0 | |||||||||
|
Lightning Pose Resource Report Resource Website |
Lightning Pose (RRID:SCR_024480) | software resource, software toolkit | Software video centric package for direct video manipulation. Semi supervised animal pose estimation algorithm, Bayesian post processing approach and deep learning package. Improved animal pose estimation via semi-supervised learning, Bayesian ensembling, and cloud-native open-source tools. | OpenBehavior, animal pose estimation algorithm, Bayesian post processing approach, direct video manipulation, | is listed by: OpenBehavior | Gatsby Charitable Foundation ; NINDS K99NS128075; Irma T Hirschl Trust ; NINDS NS075023; NINDS U19NS123716; NSF ; Simons Foundation |
PMID:37162966 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/lightningpose/ | SCR_024480 | 2026-02-14 02:05:55 | 0 | |||||||
|
Optimouse project Resource Report Resource Website |
Optimouse project (RRID:SCR_021463) | data or information resource, portal, project portal | Project related to individual mice positions analysis, specifically their nose positions. Includes software tool for analysis of mouse position data designed by Hebrew University scientists. Provides open source software to analyze positions of individual mice, specifically their nose positions, in behavioral arena with the goal of minimizing error. | Mouse position data analysis, mouse position, position data, nose position, OpenBehavior |
is listed by: OpenBehavior is related to: Optimouse has parent organization: Hebrew University of Jerusalem; Jerusalem; Israel |
DOI:10.1186/s12915-017-0377-3 | Free, Freely available | SCR_021463 | Optimouse | 2026-02-14 02:05:47 | 0 | ||||||||
|
Mousetrap project Resource Report Resource Website |
Mousetrap project (RRID:SCR_021456) | data or information resource, portal, project portal | Project related to mouse tracking and analysis of mouse movements during computerized lab experiments. Provides open source software plugin to record and analyze mouse movements. | Record mouse movements, analyze mouse movements, mouse tracking, OpenBehavior |
is listed by: OpenBehavior is related to: Mousetrap |
DOI:10.3758/s13428-017-0900-z | Free, Freely available | SCR_021456 | Mousetrap | 2026-02-14 02:05:37 | 0 | ||||||||
|
MedParse project Resource Report Resource Website |
MedParse project (RRID:SCR_021455) | data or information resource, portal, project portal | Project related to saving precise times of behavioral events.Provides software tool to read MedPC data into Python and Matlab. | Read MedPC data, Python, Matlab, behavioral events, time event codes, OpenBehavior |
is listed by: OpenBehavior is related to: MedParse |
Free, Freely available | SCR_021455 | MedParse | 2026-02-14 02:05:44 | 0 | |||||||||
|
Quantifying Animal Movement from Pre-recorded Videos project Resource Report Resource Website |
Quantifying Animal Movement from Pre-recorded Videos project (RRID:SCR_021436) | STL | data or information resource, portal, project portal | Project related to visualizing and quantifying movement from pre-recorded videos. Provides software toolbox for visualizing and quantifying movement.Used for summarizing animal movement data as single image ( spectral time lapse algorithm) as well as automate analysis of animal movement data. | Visualizing movement, quantifying movement, pre-recorded videos movement, summarizing animal movement data, single image, automate analysis, animal movement data, movement tracking, path analysis, video visualization, video summarization, image analysis, OpenBehavior |
is listed by: OpenBehavior is related to: Quantifying Animal Movement from Pre-recorded Videos |
DOI:10.12688/f1000research.3-19.v1 | Free, Freely available | SCR_021436 | Quantifying Animal Movement from Pre-recorded Videos | 2026-02-14 02:05:43 | 0 | |||||||
|
Behavioral Observation Research Interactive Software project Resource Report Resource Website 1+ mentions |
Behavioral Observation Research Interactive Software project (RRID:SCR_021434) | BORIS | data or information resource, portal, project portal | Project related to computer based review of previously recorded videos or live observations. Related to study of animal and human behavior. Provides open source, multiplatform standalone program that allows user specific coding environment for computer based review of previously recorded videos or live observations.Developed by scientists from University of Turin. | Specific coding environment, computer based review, previously recorded videos review, live observations review, OpenBehavior |
is listed by: OpenBehavior is related to: Behavioral Observation Research Interactive Software has parent organization: University of Turin;Turin;Italy |
DOI:10.1111/2041-210x.12584 | Free, Freely available | SCR_021434 | Behavioral Observation Research Interactive Software | 2026-02-14 02:05:46 | 9 | |||||||
|
M-Track project Resource Report Resource Website |
M-Track project (RRID:SCR_021433) | data or information resource, portal, project portal | Project related to tracking movement of labelled paws in grooming and freely behaving mice. Provides software toolbox for automated detection of forepaw trajectories in mice. | Automated detection, forepaw trajectories, labelled forepaw, freely behaving mice, freely behaving rats, simultaneous trackcking individual paws, movement, spontaneous grooming episodes, OpenBehavior |
is listed by: OpenBehavior is related to: M-Track |
DOI:10.1371/journal.pcbi.1005115 | Free, Freely available | SCR_021433 | M-Track | 2026-02-14 02:05:37 | 0 | ||||||||
|
Pathfinder project Resource Report Resource Website |
Pathfinder project (RRID:SCR_021447) | data or information resource, portal, project portal | Project to detect spatial navigation behavior in animals.Provides open source software for analyzing spatial navigation search strategies developed by University of British Columbia scientists. | Analyzing spatial navigation search strategies, spatial navigation, search strategies, OpenBehavior |
is listed by: OpenBehavior is related to: Pathfinder has parent organization: University of British Columbia; British Columbia; Canada |
DOI:10.1101/715961 | Free, Freely available | SCR_021447 | Pathfinder | 2026-02-14 02:05:37 | 0 | ||||||||
|
AutoPilot project Resource Report Resource Website |
AutoPilot project (RRID:SCR_021448) | data or information resource, portal, project portal | Project related to behavioral experiments.Provides software Python framework for running behavioral experiments designed by University of Oregon scientists. | Running behavioral experiments, automating behavioral experiments, Raspberry Pis, design experiments modules, OpenBehavior |
is listed by: OpenBehavior is related to: AutoPilot has parent organization: University of Oregon; Oregon; USA |
DOI:10.1101/807693 | Free, Freely available | SCR_021448 | AutoPilot | 2026-02-14 02:05:47 | 0 |
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