Searching the RRID Resource Information Network
Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.
SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
BEAM Resource Report Resource Website 500+ mentions |
BEAM (RRID:SCR_007258) | BEAM | software application, software resource | Software application that treats the disease-associated markers and their interactions via a bayesian partitioning model and computes, via Markov chain Monte Carlo, the posterior probability that each marker set is associated with the disease. (entry from Genetic Analysis Software) | gene, genetic, genomic, c++, unix, linux, dos | is listed by: Genetic Analysis Software | nlx_154240 | SCR_007258 | Bayesian Epistasis Association Mapping | 2026-02-15 09:19:31 | 651 | ||||||||
|
LDSELECT Resource Report Resource Website 10+ mentions |
LDSELECT (RRID:SCR_007010) | LDSELECT | software application, software resource | Software program that analyzes patterns of linkage disequilibrium (LD) between polymorphic sites in a locus, and bins the SNPs on the basis of a threshold level of LD as measured by r2. (entry from Genetic Analysis Software), THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | gene, genetic, genomic, bio.tools |
is listed by: Genetic Analysis Software is listed by: bio.tools is listed by: Debian |
THIS RESOURCE IS NO LONGER IN SERVICE | biotools:ld_select, nlx_154426 | https://bio.tools/ld_select | SCR_007010 | 2026-02-15 09:19:21 | 15 | |||||||
|
INTEGRAYEDMAP Resource Report Resource Website |
INTEGRAYEDMAP (RRID:SCR_007489) | INTEGRAYEDMAP | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVCE, documented September 22, 2016. A web application and database schema for storing and interactively displaying genetic map data. | gene, genetic, genomic, ms-windows, (nt/2000/xp profession/), require either, oracle rdbms, or, mysql | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154099 | ftp://cggc.agtec.uga.edu/IntegratedMap/ | SCR_007489 | 2026-02-15 09:19:36 | 0 | |||||||
|
LDMAP Resource Report Resource Website 1+ mentions |
LDMAP (RRID:SCR_006308) | LDMAP | software application, software resource | Software program for constructing linkage disequilibrium (LD) maps. (entry from Genetic Analysis Software) | gene, genetic, genomic, c, unix, solaris | is listed by: Genetic Analysis Software | nlx_154425 | SCR_006308 | 2026-02-15 09:19:13 | 8 | |||||||||
|
ILLUMINUS Resource Report Resource Website |
ILLUMINUS (RRID:SCR_000388) | Illuminus | software application, software resource | A fast and accurate algorithm for assigning single nucleotide polymorphism (SNP) genotypes to microarray data from the Illumina BeadArray technology. | gene, genetic, genomic, c++, single nucleotide polymorphism, genotype, microarray, illumina beadarray, illumina |
is listed by: OMICtools is listed by: Genetic Analysis Software has parent organization: Wellcome Trust Sanger Institute; Hinxton; United Kingdom |
PMID:17846035 | Free, Available for download, Freely available | OMICS_00726, nlx_154408 | http://www.sanger.ac.uk/resources/software/illuminus/ | http://www.sanger.ac.uk/science/tools/illuminus | SCR_000388 | Illuminus: the genotype calling algorithm | 2026-02-15 09:17:55 | 0 | ||||
|
BARS Resource Report Resource Website 10+ mentions |
BARS (RRID:SCR_009123) | BARS | software application, software resource | Software application that is a statistical method that bridges the gap between single-locus and haplotype-based tests of association. It is based on the non-parametric regression techniques embodied by Bayesian Adaptive Regression Splines. (entry from Genetic Analysis Software), THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | gene, genetic, genomic, r, linux, bio.tools |
is listed by: Genetic Analysis Software is listed by: bio.tools is listed by: Debian |
THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154204, biotools:bars, nlx_154228, SCR_009106 | https://bio.tools/bars | SCR_009123 | Bayesian Adaptive Regression Splines | 2026-02-15 09:19:57 | 39 | ||||||
|
JENTI Resource Report Resource Website |
JENTI (RRID:SCR_009053) | JENTI | software application, software resource | An efficient tool for mining complex inbred genealogies that identify clusters of individuals sharing the same expected amount of relatedness is described. Additionally it allows for the reconstruction of sub-pedigrees suitable for genetic mapping in a systematic way. (entry from Genetic Analysis Software) | gene, genetic, genomic, java | is listed by: Genetic Analysis Software | nlx_154033 | SCR_009053 | 2026-02-15 09:20:01 | 0 | |||||||||
|
COMBIN Resource Report Resource Website |
COMBIN (RRID:SCR_009050) | COMBIN | software application, software resource | Software application designed for the construction of highly saturated linkage maps, based on BC1, DH, Radiation Hybrid or CP (CrossPollinators) data sets. F2 is not supported. (entry from Genetic Analysis Software) | gene, genetic, genomic, visual basic 5, ms-windows, (95/98/nt) | is listed by: Genetic Analysis Software | nlx_154025 | http://www.dpw.wau.nl/pv/pub/combin/ | SCR_009050 | 2026-02-15 09:20:02 | 0 | ||||||||
|
ARLEQUIN Resource Report Resource Website 5000+ mentions |
ARLEQUIN (RRID:SCR_009051) | ARLEQUIN | software application, software resource | An exploratory population genetics software environment able to handle large samples of molecular data (RFLPs, DNA sequences, microsatellites), while retaining the capacity of analyzing conventional genetic data (standard multi-locus data or mere allele frequency data). (entry from Genetic Analysis Software) | gene, genetic, genomic, ms-windows, (95/98/nt/2000/xp) | is listed by: Genetic Analysis Software | nlx_154029 | SCR_009051 | this software is about the study of genetic polymorphism.), a character of the Italian Commedia dell''Arte. He has many aspects, but can switch among them very easily according to needs and necessities. Similarly, (French translation of Arlecchino | 2026-02-15 09:19:56 | 5536 | ||||||||
|
GRONLOD Resource Report Resource Website |
GRONLOD (RRID:SCR_009049) | GRONLOD | software application, software resource | Conversion programs from LINKAGE files are available. The program uses peeling and can employ nested conditioning. There is an automatic peeling program that will unravel (multiple) loops. Alleles do not need to be recoded, so real allele sizes can be used. Genotype probabilities for a chosen person can be calculated for purposes of genetic risk calculation. Later versions include one for calculations using linked markers and mutations and mosaicism, made by Martin van der Meulen. A symbolic versions will generate the formula to compute the pedigree likelihood. (entry from Genetic Analysis Software) | gene, genetic, genomic, prolog, ms-windows, (3.1/95/nt) | is listed by: Genetic Analysis Software | nlx_154024 | SCR_009049 | GRONingen university LOR score calculation | 2026-02-15 09:20:01 | 0 | ||||||||
|
SNP ASSISTANT Resource Report Resource Website |
SNP ASSISTANT (RRID:SCR_009048) | SNP ASSISTANT | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVCE, documented September 22, 2016. Software application for SNP data managing, import & export from linkage format, data validation, pairwise LD calculation and visualisation, case-control and TDT tests, visual comparison of two datasets, relationships testing. Suitable for large projects. | gene, genetic, genomic, c++, ms-windows, (95 and newer) | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154023 | SCR_009048 | 2026-02-15 09:19:37 | 0 | ||||||||
|
PEDIGREEQUERY Resource Report Resource Website 1+ mentions |
PEDIGREEQUERY (RRID:SCR_009041) | PEDIGREEQUERY | software application, software resource | Software application that allows drawing pedigrees with a difficult structure, those containing consanguinity loops, and those individuals with multiple mates or several related families (entry from Genetic Analysis Software) | gene, genetic, genomic, bio.tools |
is listed by: Genetic Analysis Software is listed by: bio.tools is listed by: Debian |
nlx_154007, biotools:pedcut | https://bio.tools/pedcut | SCR_009041 | 2026-02-15 09:20:02 | 1 | ||||||||
|
PATH Resource Report Resource Website 100+ mentions |
PATH (RRID:SCR_009042) | PATH | software application, software resource | Web application to investigate gene-gene interactions in genetic association studies designed to: 1. Interface your SNP data with biological information from several online bioinformatics databases. 2. Generate biologically plausible hypotheses for testing gene-gene interactions. 3. Select a subset of SNPs and conduct SNP-SNP interaction tests. 4. Store analysis results. 5. Explore analysis results through interactive plots and summary tables. (entry from Genetic Analysis Software), THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | gene, genetic, genomic, ms-windows, linux, FASEB list | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154015 | SCR_009042 | 2026-02-15 09:19:56 | 253 | ||||||||
|
FASTSLINK Resource Report Resource Website 10+ mentions |
FASTSLINK (RRID:SCR_008664) | FASTSLINK | software application, software resource | Software application that is a faster version of SLINK (entry from Genetic Analysis Software) | gene, genetic, genomic, c, unix, bio.tools |
is listed by: Genetic Analysis Software is listed by: bio.tools is listed by: Debian is related to: SLINK is related to: SUP |
nlx_154312, biotools:snpcaller | https://bio.tools/snpcaller | SCR_008664 | faster SLINK | 2026-02-15 09:19:52 | 12 | |||||||
|
GENEPI.JAR Resource Report Resource Website |
GENEPI.JAR (RRID:SCR_008782) | GENEPI.JAR | software application, software resource | A set of Java programs for genetic epidemiology analysis (entry from Genetic Analysis Software) | gene, genetic, genomic, java, web-based | is listed by: Genetic Analysis Software | nlx_154336 | http://bioinformatics.med.utah.edu/~alun/software/index.html | SCR_008782 | JPSGCS | 2026-02-15 09:19:54 | 0 | |||||||
|
SNPHARVESTER Resource Report Resource Website 1+ mentions |
SNPHARVESTER (RRID:SCR_008536) | SNPHARVESTER | software application, software resource | Software tool for detecting epistatic interactions in genome-wide association studies (entry from Genetic Analysis Software) | gene, genetic, genomic, java | is listed by: Genetic Analysis Software | nlx_154643 | SCR_008536 | 2026-02-15 09:19:32 | 6 | |||||||||
|
BDGEN Resource Report Resource Website 1+ mentions |
BDGEN (RRID:SCR_008811) | BDGEN | software application, software resource | Powerful database software with improvement tools for paternity testing, database searching (like CODIS) and NRC II recommendations based formulae for investigating likelyhood ratios in putative contributors to crime evidences. Additional genetic population parameters estimations are added in this version. Only spanish version available. (entry from Genetic Analysis Software) | gene, genetic, genomic, ms-windows | is listed by: Genetic Analysis Software | nlx_154237 | SCR_008811 | 2026-02-15 09:19:54 | 1 | |||||||||
|
EASYPOP Resource Report Resource Website 10+ mentions |
EASYPOP (RRID:SCR_008961) | EASYPOP | software application, software resource | Software application allowing to simulate population genetics datasets. It allows generating genetic data for haploid, diploid, and haplodiploid organisms under a variety of mating systems. It includes various migration and mutation models. Output can be generated for the FSTAT, GENEPOP, and ARLEQUIN genetic analysis packages. (entry from Genetic Analysis Software), THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | gene, genetic, genomic, ms-windows, (95/98/nt/2000/xp), macos, (x) | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154012 | http://www.unil.ch/dee/page36926_fr.html | SCR_008961 | 2026-02-15 09:20:00 | 16 | |||||||
|
CARTHAGENE Resource Report Resource Website 10+ mentions |
CARTHAGENE (RRID:SCR_009013) | CARTHAGENE | software application, software resource | A genetic/radiation hybrid mapping software that looks for multiple populations maximum likelihood consensus maps using a fast EM algorithm for maximum likelihood estimation and powerful ordering algorithms inspired from TSP (Traveling Salesman Problem) technology. It can handle large data sets made up of different populations (either F2 backcross, recombinant inbred lines, F2 intercross, phase known outbreds, haploid/diploid radiation hybrids). It can also exploit existing syntenic relationships between the organism mapped and a reference (sequenced) organism for accurate dense RH mapping. (entry from Genetic Analysis Software) | gene, genetic, genomic, c++, tcl/tk, ms-windows, unix, solaris, linux, sources are available for other operating systems (gpl/qpl). | is listed by: Genetic Analysis Software | nlx_154008 | SCR_009013 | 2026-02-15 09:20:01 | 42 | |||||||||
|
SNP-HWE Resource Report Resource Website 1+ mentions |
SNP-HWE (RRID:SCR_008555) | SNP-HWE | software application, software resource | Software application for a fast exact Hardy-Weinberg Equilibrium test for SNPs (entry from Genetic Analysis Software) | gene, genetic, genomic, fortran, c, c++, r | is listed by: Genetic Analysis Software | nlx_154645 | SCR_008555 | 2026-02-15 09:19:32 | 4 |
Can't find your Tool?
We recommend that you click next to the search bar to check some helpful tips on searches and refine your search firstly. Alternatively, please register your tool with the SciCrunch Registry by adding a little information to a web form, logging in will enable users to create a provisional RRID, but it not required to submit.
Welcome to the SPARC SAWG Resources search. From here you can search through a compilation of resources used by SPARC SAWG and see how data is organized within our community.
You are currently on the Community Resources tab looking through categories and sources that SPARC SAWG has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.
If you have an account on SPARC SAWG then you can log in from here to get additional features in SPARC SAWG such as Collections, Saved Searches, and managing Resources.
Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:
If you are logged into SPARC SAWG you can add data records to your collections to create custom spreadsheets across multiple sources of data.
Here are the facets that you can filter the data by.
If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.
