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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Automated Rodent Tracker Resource Report Resource Website |
Automated Rodent Tracker (RRID:SCR_021510) | ART | data processing software, software application, software resource | Software tool to automatically track rodent position and movement.Used to track head movements, body movements and also aspects of body size. It is able to identify certain behaviours from video footage too, such as rotations, moving forwards, interacting with objects and staying still. | Track rodent position, track movement, track head movements, track body movements, OpenBehavior |
is listed by: OpenBehavior is related to: Automated Rodent Tracker project |
DOI:10.1016/j.jneumeth.2017.04.006 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/automated-rodent-tracker-art/ | SCR_021510 | 2026-02-16 09:50:02 | 0 | |||||||
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neurotic project Resource Report Resource Website |
neurotic project (RRID:SCR_021403) | data or information resource, project portal, portal | Project about synchronizing video and neural signals. Provides software Python toolbox for interactive characterization in neuroscience.Software tool used to review and annotate signal data synchronized with video, performs simple initial analyses including signal filtering and spike detection, supports variety of file formats. | Anotate electrophysiology data, interactive characterization, neural data and video, signal data, signal filtering, spike detection, OpenBehavior |
is listed by: OpenBehavior is related to: neurotic |
DOI:10.1523/eneuro.0085-20.2020 | Free, Freely available | SCR_021403 | neurotic, NEUROTIC, NEUROscience Tool for Interactive Characterization | 2026-02-16 09:50:01 | 0 | ||||||||
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DeepFly3D project Resource Report Resource Website |
DeepFly3D project (RRID:SCR_021400) | data or information resource, project portal, portal | Project related to deep learning based pose estimator for studying how neural circuits control limbed behaviors in tethered Drosophila. Includes Deep Fly image annotation tool for pose estimation and to permit further correction of 2D pose estimates, which are automatically converted to 3D pose. | Image annotation, pose tracking, pose estimation, motor circuit, behavioral measure, accurate 3D pose estimation, OpenBehavior |
is listed by: OpenBehavior is related to: DeepFly3D |
DOI:10.7554/elife.48571 | Free, Freely available | SCR_021400 | DeepFly3D | 2026-02-16 09:50:01 | 0 | ||||||||
|
RodentJoystick Resource Report Resource Website |
RodentJoystick (RRID:SCR_023482) | data or information resource, project portal, portal | Project features single board real time input/output system including touch sensing joysticks to quantify mouse forelimb trajectories with micron millisecond spatiotemporal resolution, which resolves mouse forelimb kinematics and further allows extraction of primitives. Joystick increases spatial precision, and reduces displacement force. Joystick is then integrated into automated home cage system to train mice in center out reach task. | OpenBehavior, touch sensing joysticks, quantify mouse forelimb trajectories, micron millisecond spatiotemporal resolution, mouse forelimb kinematics, instrument | is listed by: OpenBehavior | PMID:30540551 | Free, Freely available | https://github.com/GoldbergLab/RodentJoystick/wiki | SCR_023482 | 2026-02-16 09:50:30 | 0 | ||||||||
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Spike Forest project Resource Report Resource Website |
Spike Forest project (RRID:SCR_021472) | data or information resource, project portal, portal | Project related to neural data analysis. Provides open-source and reproducible software suite that benchmarks performance of automated spike sorting algorithms across extensive, curated database of ground truth electrophysiological recordings, displaying results interactively on continuously updating website. | Validating automated neural spike sorters, electrophysiological recordings, spike sorting codes, spike sorting analysis, OpenBehavior |
is listed by: OpenBehavior is related to: Spike Forest |
DOI:10.7554/elife.55167 | Free, Freely available | SCR_021472 | Spike Forest | 2026-02-16 09:50:02 | 0 | ||||||||
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Pypreclin project Resource Report Resource Website |
Pypreclin project (RRID:SCR_021473) | data or information resource, project portal, portal | Project related to preprocessing of images. Provieds software Python tool to processes raw macaque fMRI images using algorithms embedded in automatic pipeline. | Raw macaque fMRI images, fMRI images, macaque images, Python, OpenBehavior |
is listed by: OpenBehavior is related to: Pypreclin |
DOI:10.1016/j.neuroimage.2019.116353 | Free, Freely available | SCR_021473 | Pypreclin | 2026-02-16 09:50:03 | 0 | ||||||||
|
MNE Scan project Resource Report Resource Website |
MNE Scan project (RRID:SCR_021470) | data or information resource, project portal, portal | Project related to real time acquisition and processing of electrophysiological data.Provides software tool for acquisition and processing of electrophysiological data. | Electrophysiological data processing, medical regulatory requirements, build standalone applications, MEG data acquisition, MEG data processing, EEG data acquisition, MEG data acquisition, OpenBehavior |
is listed by: OpenBehavior is related to: MNE Scan |
DOI:10.1016/j.jneumeth.2018.03.020 | Free, Freely available | SCR_021470 | MNE Scan | 2026-02-16 09:50:03 | 0 | ||||||||
|
3DTracker project Resource Report Resource Website |
3DTracker project (RRID:SCR_021440) | data or information resource, project portal, portal | Project related to markerless computerized behavioral analysis for laboratory animals.Provides open source 3D video based behavioral analysis system for neuroscience. System includes open source software tool for 3D-video based markerless computerized behavioral analysis. | 3D video, computerized behavioral analysis, laboratory animals, reconstruct 3D image, animal image, 3D image, estimate animal 3D pose, behavior measurement, freely moving, head fixed, OpenBehavior |
is listed by: OpenBehavior is related to: 3DTracker |
Free, Freely available | SCR_021440 | 3DTracker | 2026-02-16 09:50:02 | 0 | |||||||||
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LinCoM project Resource Report Resource Website |
LinCoM project (RRID:SCR_021438) | data or information resource, project portal, portal | Project related to animal behavior in complex mazes.Provides software MATLAB package for linearization of place fields in complex mazes. | Place fields linearization, complex mazes, producing linear place fields, hippocampal cells, complex mazes behavior, OpenBehavior |
is listed by: OpenBehavior is related to: LinCoM |
DOI:10.1101/2020.08.17.253849 | Free, Freely available | SCR_021438 | LinCoM | 2026-02-16 09:50:02 | 0 | ||||||||
|
Pynapple Resource Report Resource Website |
Pynapple (RRID:SCR_023312) | software application, data processing software, software toolkit, data analysis software, software resource, standalone software | Software object oriented, lightweight and standalone Python toolbox for neural data analysis. Its core features five versatile timeseries objects from Pandas library, allowing it the versatility to be used with most raw neuroscience data types and produce some common analysis forms. | OpenBehavior, neural data analysis, neuroscience data analysis, Pandas library objects, raw neuroscience data types, | is listed by: OpenBehavior | DOI:10.1101/2022.12.06.519376 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/pynapple/ | SCR_023312 | 2026-02-16 09:50:38 | 0 | ||||||||
|
DeepBehavior Resource Report Resource Website |
DeepBehavior (RRID:SCR_021414) | software application, data processing software, software toolkit, data analysis software, software resource | Software toolbox that automates taking high speed quality video to track behavior to analyze and track behavior in rodents and humans. | track behavior, analyze and track behavior, rodent, human, automated analysis, imaging data, OpenBehavior |
is listed by: OpenBehavior is related to: DeepBehavior project |
DOI:10.3389/fnsys.2019.00020 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/deepbehavior/ | SCR_021414 | 2026-02-16 09:50:02 | 0 | ||||||||
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Low Cost Open Source Eye Tracking project Resource Report Resource Website |
Low Cost Open Source Eye Tracking project (RRID:SCR_021415) | instrument resource, data or information resource, project portal, portal | Project related to eye tracking system for human research.System includes open source software for accurate eye tracking. Can identify shapes such as circles, lines, and triangles.You can rotate and mirror images and also use variety of filters.Capable of processing video in real-time for optical flow. App for viewing multiple video streams from USB cameras. | Real time eye tracking, identify shapes, identify circles, identify lines, identify triangles, fixed point laser beacons, camera, processing video in real time, OpenBehavior, Instrument |
is listed by: OpenBehavior is related to: Low Cost Open Source Eye Tracking |
Free, Freely available | SCR_021415 | Low Cost Open Source Eye Tracking | 2026-02-16 09:50:01 | 0 | |||||||||
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Locomouse project Resource Report Resource Website |
Locomouse project (RRID:SCR_021390) | instrument resource, data or information resource, project portal, portal | Project related to study movement coordination in free walking mice. Provides noninvasive system consisting of cameras and machine learning algorithms that allow for three dimensional detection and tracking of mouse paws, tail, and nose. | Movement study, movementcoordination, free walking mice, OpenBehavior, Instrument |
is listed by: OpenBehavior is related to: LocoMouse |
DOI:10.7554/elife.07892 | Free, Freely available | SCR_021390 | Locomouse | 2026-02-16 09:50:01 | 0 | ||||||||
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DeepPoseKit project Resource Report Resource Website |
DeepPoseKit project (RRID:SCR_021395) | instrument resource, data or information resource, project portal, portal | Project related to pose estimation and tracking.Includes software toolkit for 2D pose estimation of user defined keypoints using deep learning.Method for pose estimation developed by behavioral scientists at the Max Planck Institute of Animal Behavior. | 2D pose estimation, animal pose estimation, animal behavior, DeepLabCut, Leap, Max Planck Institute, OpenBehavior, Instrument |
is listed by: OpenBehavior is related to: DeepPoseKit |
DOI:10.7554/elife.47994 | Free, Freely available | SCR_021395 | DeepPoseKit | 2026-02-16 09:50:01 | 0 | ||||||||
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EthoScopes project Resource Report Resource Website |
EthoScopes project (RRID:SCR_021426) | instrument resource, data or information resource, project portal, portal | Project related to analysis of behavior in Drosophila.Provides system capable of real time video tracking. System includes raspberry pi and R package for data analysis. Enables high throughput analysis of behavior in Drosophila and other animals. | Data analysis, ethoscope platform, behavior analysis, Drosophila analysis, animals behavior analysis, OpenBehavior, Instrument |
is listed by: OpenBehavior is related to: EthoScopes |
DOI:10.1371/journal.pbio.2003026 | Free, Freely available | SCR_021426 | EthoScopes | 2026-02-16 09:50:02 | 0 | ||||||||
|
Picamera project Resource Report Resource Website |
Picamera project (RRID:SCR_021423) | instrument resource, data or information resource, project portal, portal | Project related to tracking animals in large spaces. Picamera system allows for tracking of animals in large behavioral arenas.Open source scalable multi camera tracking system that can be used to track behavior in combination with wireless recording systems.Design is comprised of 8 overhead Raspberry Pi cameras, capable of recording at high frame rate in large field of view, recording video independently in individual Raspberry Pi microcomputers and processed using Picamera Python library. | Tracking rats in large spaces, camera system, Picamera Python library, OpenBehavior, Instrument | is listed by: OpenBehavior | DOI:10.1152/jn.00215.2018 | Free, Freely available | SCR_021423 | Picamera | 2026-02-16 09:50:01 | 0 | ||||||||
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Live Mouse Tracker project Resource Report Resource Website |
Live Mouse Tracker project (RRID:SCR_021421) | LMT | instrument resource, data or information resource, project portal, portal | Project related to monitoring social interactions of mice. Provides real time behavioral analysis system for groups of mice.System includes random forest machine learning process, RFID sensors and infrared depth RGB-D camera.System includes software tool for Live Mouse Tracker analysis. | Behavioral analysis system, groups of mice, assess complex social behavioral, differences between mice, , lmt-analysis, OpenBehavior, Instrument |
is listed by: OpenBehavior is related to: Live Mouse Tracker analysis is related to: Live Mouse Tracker Toolkit Analysis |
DOI:s41551-019-0396-1 | Free, Freely available | SCR_021421 | Live Mouse Tracker | 2026-02-16 09:50:01 | 0 | |||||||
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D-Track project Resource Report Resource Website |
D-Track project (RRID:SCR_021389) | instrument resource, data or information resource, project portal, portal | Project related to tracking animal behavior. Provided system includes two cameras and software package to track aquatic animals within captivity.Semi automatic 3D video tracking technique to analyse movements and routines of aquatic animals with application to captive dolphins. | Object tracking, track aquatic animals, dolphin tracker, 3D video tracking, analyse movements, OpenBehavior, Instrument |
is listed by: OpenBehavior is related to: D-Track |
DOI:10.1371/journal.pone.0201614 | Free, Freely available | SCR_021389 | D-Track | 2026-02-16 09:50:01 | 0 | ||||||||
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OpenMonkeyStudio project Resource Report Resource Website |
OpenMonkeyStudio project (RRID:SCR_021409) | instrument resource, data or information resource, project portal, portal | Project for tracking interactions among freely moving monkeys.System includes integrated hardware and software for pose tracking in freely moving rhesus macaques. | Pose tracking, non human primates, motion capture system, 3D pose, freely moving macaques, interactions among freely moving monkeys, OpenBehavior, Instrument | is listed by: OpenBehavior | DOI:10.1038/s41467-020-18441-5 | Free, Freely available | SCR_021409 | OpenMonkeyStudio | 2026-02-16 09:50:01 | 0 | ||||||||
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Rodent Arena Tracker project Resource Report Resource Website |
Rodent Arena Tracker project (RRID:SCR_021408) | RAT | instrument resource, data or information resource, project portal, portal | Project related to rodent tracking and task control.Provides closed loop system for machine vision rodent tracking and task control created by scientist from Washington University. System to track and report mouse activity while they are contained in simple arena. System uses OpenMV M7 microcontroller to acquire images of arena and process them in real-time to report mouse centroid data to text file. Wireless position tracker for automatically tracking mice in high contrast arenas. | Wireless position tracker, automatically tracking mice, positional behavior data, OpenMV M7 microcontroller, acquire arena images, mouse movement, OpenMV Cam M7 hardware, OpenBehavior, instrument, equipment, USEDit, Instrument |
is listed by: OpenBehavior has parent organization: Washington University in St. Louis; Missouri; USA |
DOI:10.1523/eneuro.0485-19.2020 | Free, Freely available | SCR_021408 | Rodent Arena Tracker | 2026-02-16 09:50:01 | 0 |
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