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https://github.com/haiderlab/DP-Lick-Detector
Distribution package for Dual Port Lick Detector.Package includes files relevant to building lick detector.
Proper citation: Dual Port Lick Detector (RRID:SCR_021521) Copy
https://github.com/wildrootlab/SHARCQ
Software tools to register histological section images and cell count locations to mouse brain atlas. Semi automated workflow and GUI for automated brain slice histology alignment, registration, and cell quantification. Used to explore Allen Mouse Brain Atlas, register asymmetric slice images to atlas using manual input, and analyze region of interest data by registering locations of fluorescently labeled cells to standardized regions of Atlas.
Proper citation: SHARCQ (RRID:SCR_022498) Copy
https://rupertoverall.net/ColonyTrack/
Software R package to process raw data from ColonyRack system. In addition to generating pre processed data and quality control information, range of high level metrics are calculated together with convenient tools for analysis.
Proper citation: ColonyTrack (RRID:SCR_023026) Copy
https://github.com/borglandlab/RunningWheel/
Open source, printable, open faced running wheels for mice residing in home cage that is automated to collect locomotor information such as distance traveled, wheel direction, and velocity. Running wheel system available on GitHub contains code and information to create and run running wheels. System consists of 3D printed wheel, Raspberry Pi 0 W, and supporting components.
Proper citation: Open Face Homecage Running Wheel (RRID:SCR_023642) Copy
https://github.com/namboodirilab/B-CALM
Open source system for behavioral control based on Arduino Mega microcontroller and MATLAB based graphical interface and analysis code. Behavior controller optimized and customized for associative learning and memory tasks. Provided software should be able to control many different types of hardware for different task configurations.
Proper citation: B-CALM (RRID:SCR_023884) Copy
https://bitbucket.org/kloostermannerflab/
Open source software tool for closed loop neuroscientific experiments capable of sub-millisecond response latency over high-rate streaming data acquired from high-count multi-electrode arrays. Used for processing and controlling closed-loop neuroscience data.
Proper citation: Falcon (RRID:SCR_023199) Copy
https://github.com/TomGeorge1234/RatInABox
Software Python toolkit for modelling locomotion and neuronal activity in continuous environments. Used to model realistic rodent locomotion and generate synthetic electrophysiological data from spatially modulated cell types.
Proper citation: RatInABox (RRID:SCR_023682) Copy
https://github.com/vivian-imbriotis/rpg
Software Python package written for Raspberry Pi for displaying visual stimuli and to provide real time feedback on stimulus timing. High performance python library for displaying drifting gratings on Raspberry Pi 3.
Proper citation: Raspberry Pi Grating (RRID:SCR_023157) Copy
https://github.com/KimchiLab/OpBoxPhys
Open source electrophysiology hardware and software package for simultaneous EEG and EMG acquisition from multiple subjects.
Proper citation: OpBox (RRID:SCR_023269) Copy
https://edspace.american.edu/openbehavior/project/d-track/
Project related to tracking animal behavior. Provided system includes two cameras and software package to track aquatic animals within captivity.Semi automatic 3D video tracking technique to analyse movements and routines of aquatic animals with application to captive dolphins.
Proper citation: D-Track project (RRID:SCR_021389) Copy
https://edspace.american.edu/openbehavior/project/laubach-lab-github-repository/
Portal related to control and decision making, focusing on role of prefrontal cortex. American University scientists through their GitHub repository provide 3D print files for many of behavioral devices used in their lab, including Nosepoke and Lickometer designed from rats.
Proper citation: Laubach Lab GitHub Repository project (RRID:SCR_021464) Copy
https://edspace.american.edu/openbehavior/project/vasic/
Project related to assessment of pain in animal models.Provided system includes weight bearing device for high throughput and unbiased behavioral pain assessment in rodents.Includes custom printed circuit board, infrared sensor, Arduino microcontroller, 3D printed parts, and open source software for analysis.
Proper citation: Voluntary Access Static Incapacitance Chamber project (RRID:SCR_021458) Copy
https://sourceforge.net/projects/toxtrac/
Software tool for tracking organisms.
Proper citation: ToxTrac (RRID:SCR_021502) Copy
https://edspace.american.edu/openbehavior/project/arduipod-box/
Project related to presenting visual and auditory stimuli, recording behavior in form of nose pokes or screen touches, and delivering liquid rewards. ProvidesOperant chamber built with iPod Touch and Arduino microcontroller as main components.
Proper citation: ArduiPod Box project (RRID:SCR_021466) Copy
https://github.com/ThreeD-Tracker-FAB
Open source software tool for 3D-video based markerless computerized behavioral analysis for laboratory animals.Used to reconstruct full 3D images of animals and fit skeletal models to 3D image to estimate 3D pose of animals.Open-source 3D video based behavioral analysis system for neuroscience.
Proper citation: 3DTracker (RRID:SCR_021506) Copy
https://github.com/gilestrolab/ethoscope
Software R package for data analysis.Enables high throughput analysis of behavior in Drosophila and other animals.
Proper citation: EthoScopes (RRID:SCR_021507) Copy
https://edspace.american.edu/openbehavior/project/open-source-joystick/
Project related to studying motor behavior and decision making in mice. Open source behavior training platform for studying motor control, decision making, and reaching reaction time. Enables behavioral work to study unexplored features of action selection, motivation, and value based decisions.
Proper citation: Joystick project (RRID:SCR_021442) Copy
https://edspace.american.edu/openbehavior/project/catalepsybar/
Project related to measuring of muscular rigidity that can result from several factors including Parkinsons disease, or pharmacological exposure to antipsychotics or cannabis. Provides automated apparatus for measuring catalepsy that increases measurement accuracy and reduces observer bias.Catalepsy bar test automatically measures and records time it takes for rat to remove its forelimbs from bar. 3D printed test apparatus used to make catalepsy measurements in rats more standardized and accurate.
Proper citation: Catalepsy Bar project (RRID:SCR_021439) Copy
https://edspace.american.edu/openbehavior/project/maple/
Portal related to measurement of fly social networks and behavior. Provides Drosophila handing robot that boasts modular design, allowing platform to both automate diverse phenotyping assays and aid with lab chores (e.g., collecting virgin female flies). MAPLE permits small part manipulator, USB digital camera, and fly manipulator to work simultaneously over platform of flies.
Proper citation: Modular Automated Platform for Large Scale Experiments project (RRID:SCR_021557) Copy
https://edspace.american.edu/openbehavior/project/open-skinner-box/
Project related to training animal behavior. Provides system which includes full behavioral apparatus and software platform. System includes software tool for data logging and analysis.
Proper citation: Skinner Box project (RRID:SCR_021437) Copy
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