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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Live Mouse Tracker analysis Resource Report Resource Website 1+ mentions |
Live Mouse Tracker analysis (RRID:SCR_021505) | LMT analysis | software toolkit, software resource | Software package for Live Mouse Tracker analysis. lmt-analysis provides all analysis tools needed to extract information from tracking performed by live mouse tracker. | Live Mouse Tracker, Live Mouse Tracker data analysis, OpenBehavior |
is listed by: OpenBehavior is related to: Live Mouse Tracker project is related to: Live Mouse Tracker Toolkit Analysis |
PMID:31110290 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/live-mouse-tracker/ | SCR_021505 | , lmt-analysis, live mouse tracker analysis, LMT analysis | 2026-02-15 09:22:06 | 2 | ||||||
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Implant for Reliable Diaphragm EMG Recordings in Awake, Behaving Rats Resource Report Resource Website |
Implant for Reliable Diaphragm EMG Recordings in Awake, Behaving Rats (RRID:SCR_026968) | instrument resource | Low-cost implant for reliable diaphragm EMG recordings in awake, behaving rats.Diaphragm EMG implant. | OpenBehavior, low-cost implant, diaphragm EMG implant, diaphragm EMG recordings, awake, behaving rats, electromyography, | is listed by: OpenBehavior | PMID:39890457 | https://edspace.american.edu/openbehavior/project/an-implant-for-diaphragm-emg-recordings-in-awake-rats/ | SCR_026968 | 2026-02-14 02:09:47 | 0 | |||||||||
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LiftPose3D Resource Report Resource Website |
LiftPose3D (RRID:SCR_023049) | software application, software resource | Software tool for transforming 2D poses to 3D coordinates on labaratory animals. Used for kinematic studies of laboratory animals. Tracking movements in three dimensions from behaving flies, mice, rats, and non-human primates. | OpenBehavior, transforming 2D poses to 3D coordinates, kinematic studies, laboratory animals, tracking movements | is listed by: OpenBehavior | SNSF Project ; SNSF Eccellenza ; European Union Horizon 2020 ; Mexican National Council for Science and Technology |
PMID:34354294 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/?s=LiftPose3D | SCR_023049 | 2026-02-15 09:22:22 | 0 | |||||||
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M3 Platform Resource Report Resource Website |
M3 Platform (RRID:SCR_023425) | software application, software resource | Software neuroscience laboratory environment for simultaneous neuronal imaging and behavioral monitoring. McGill-Mouse-Miniscope Touchscreen Behavior Platform. Standardized approach for high throughput imaging of neuronal dynamics during behavior. | OpenBehavior, touchscreen behavioral platform, calcium imaging, animal behavioral testing.standardized measurements, neuronal activity, behavioral tasks, disease modeling, mice | is listed by: OpenBehavior | Canada First Research Excellence Fund | PMID:32691490 | Free, Available for download, Freely available, | https://edspace.american.edu/openbehavior/project/m3-platform-the-mcgill-mouse-miniscope-touchscreen-behavior-platform/ | SCR_023425 | McGill-Mouse-Miniscope (M3) Platform, McGill-Mouse-Miniscope platform | 2026-02-15 09:23:10 | 0 | ||||||
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LabNet Resource Report Resource Website |
LabNet (RRID:SCR_023712) | software application, software resource | Open source software for parallel control over multiple behavioral systems.C++ optimized control layer software to give access to Raspberry Pi connected hardware. Suitable for time critical operations, and to be simple to expand. Used for general automation in experimental laboratories with its control PC located at some distance. | OpenBehavior, parallel control over multiple behavioral systems, C++ optimized control layer, access to Raspberry Pi connected hardware, | is listed by: OpenBehavior | German Research Foundation | PMID:36583654 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/labnet/ | SCR_023712 | 2026-02-15 09:22:30 | 0 | |||||||
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Mousebytes Resource Report Resource Website 1+ mentions |
Mousebytes (RRID:SCR_017904) | data repository, database, storage service resource, service resource, data or information resource | Open access database for all cognitive data collected from touchscreen related tasks. Performs data comparison and interactive data visualization for any data uploaded onto the site. There are also guidelines and video tutorials available. | Data, mouse, cognition, imaging, genomics, integration, bio.tools, OpenBehavior |
is listed by: Debian is listed by: bio.tools is listed by: OpenBehavior has parent organization: Western University; Ontario; Canada |
Weston Brain Institute (Canada) ; Canadian Institute of Health Research ; NSERC ; Alzheimer’s Society of Canada ; Canadian First Research Excellence Fund (BrainsCAN) ; Brain Canada |
PMID:31825307 | Free, Freely available | SCR_021549, SCR_021598, r3d100013886, biotools:Mousebytes | https://bio.tools/MouseBytes https://edspace.american.edu/openbehavior/project/touchscreen-cognition-mousebytes/ https://doi.org/10.17616/R31NJN7I |
SCR_017904 | MouseBytes | 2026-02-16 09:49:22 | 4 | |||||
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EthoWatcher project Resource Report Resource Website |
EthoWatcher project (RRID:SCR_021435) | data or information resource, project portal, portal | Project related to video tracking, detailed ethography, and extraction of kinematic variables from digital video files of laboratory animals.Provides computational tool developed at Federal University of Santa Catarina. | Video tracking, kinematic variables extraction. digital video files, laboratory animals, OpenBehavior |
is listed by: OpenBehavior is related to: EthoWatcher has parent organization: Federal University of Santa Catarina; Santa Catarina; Brazil |
DOI:10.1016/j.compbiomed.2011.12.002 | Free, Freely available | SCR_021435 | EthoWatcher | 2026-02-16 09:50:01 | 0 | ||||||||
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Automated Rodent Tracker project Resource Report Resource Website |
Automated Rodent Tracker project (RRID:SCR_021432) | ART | data or information resource, project portal, portal | Project related to development of automated rodent tracking position and movement. Provides software tool to automatically track rodent.Used to track head movements, body movements and also aspects of body size.Identifies certain behaviours from video footage, such as rotations, moving forwards, interacting with objects and staying still. | Track rodent position, track movement, track head movements, track body movements, OpenBehavior |
is listed by: OpenBehavior is related to: Automated Rodent Tracker |
DOI:10.1016/j.jneumeth.2017.04.006 | Free, Freely available | SCR_021432 | Automated Rodent Tracker | 2026-02-16 09:50:01 | 0 | |||||||
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DeepSqueak project Resource Report Resource Website |
DeepSqueak project (RRID:SCR_021450) | data or information resource, project portal, portal | Project related to rodent social communication through repertoire of ultrasonic vocalizations. Provides deep learning based system for quantification of Ultrasonic Vocalizations.Includes software MATLAB package for high throughput USV detection, classification, and analysis. | data quantification, ultrasonic vocalizations quantification, ultrasonic vocalization, OpenBehavior |
is listed by: OpenBehavior is related to: DeepSqueak |
DOI:10.1038/s41386-018-0303-6 | Free, Freely available | SCR_021450 | DeepSqueak | 2026-02-16 09:50:03 | 0 | ||||||||
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Camera Control project Resource Report Resource Website |
Camera Control project (RRID:SCR_021569) | software resource, data or information resource, project portal, portal | Portal provides Python based camera software GUI developed by Harvard University scientists. Open source software package that allows video to be recorded in sync with behavior. Python API to record video system timestamps from Imaging Source USB cameras. | Camera software, Python API, record video system timestamps, Imaging Source USB cameras, OpenBehavior |
is listed by: OpenBehavior is related to: Camera Control has parent organization: Harvard University; Cambridge; United States |
Free, Freely available | SCR_021569 | Camera Control | 2026-02-16 09:50:03 | 0 | |||||||||
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Rigbox project Resource Report Resource Website |
Rigbox project (RRID:SCR_021444) | data or information resource, project portal, portal | Project related to streamlining behavioral neuroscience experiments.Provides open source software MATLAB toolbox for running behavioral neuroscience experiments and managing data.Used for probing neurons and behavior. | Managing behavioral neuroscience experiments, running behavioral neuroscience experiments, managing data, acquiring experiment related data, OpenBehavior |
is listed by: OpenBehavior is related to: Rigbox |
DOI:10.1523/eneuro.0406-19.2020 | Free, Freely available | SCR_021444 | Rigbox | 2026-02-16 09:50:02 | 0 | ||||||||
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Online Animal Tracker project Resource Report Resource Website |
Online Animal Tracker project (RRID:SCR_021386) | OAT | data or information resource, project portal, portal | Project related to processing video, extracting object position information, and streaming data.Provides set of programs for processing video for behavioral research. Includes OAT software tool as real time position tracker which was developed by Massachusetts Institute of Technology scientists. | Real time animal position tracking, experimental neuroscience, real time object tracking, processing images, extracting object position information, streaming data to disk, OpenBehavior |
is listed by: OpenBehavior is related to: Online Animal Tracker has parent organization: Massachusetts Institute of Technology; Massachusetts; USA; |
Free, Freely available | SCR_021386 | Online Animal Tracker | 2026-02-16 09:50:01 | 0 | ||||||||
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Behavioral Segmentation of Open-field in DeepLabCut project Resource Report Resource Website |
Behavioral Segmentation of Open-field in DeepLabCut project (RRID:SCR_021410) | B-SOiD | data or information resource, project portal, portal | Project related to unsupervised behavior analysis.Carnegie Mellon University has shared B-SOiD, open source unsupervised algorithm for discovery of spontaneous behaviors. Includes software pipeline that pairs unsupervised pattern recognition with supervised classification to achieve fast predictions of behaviors that are not predefined by users. | OpenBehavior, pairs unsupervised pattern recognition, supervised classification, behavior predictions, discovers actions, classifies actions |
is listed by: OpenBehavior is related to: Behavioral Segmentation of Open-field in DeepLabCut has parent organization: Carnegie Mellon University; Pennsylvania; USA |
DOI:10.1101/770271 | Free, Freely available | SCR_021410 | B-SOiD v2.0, Behavioral Segmentation of Open-field in DeepLabCut | 2026-02-16 09:50:02 | 0 | |||||||
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Simple Behavior Analysis project Resource Report Resource Website |
Simple Behavior Analysis project (RRID:SCR_021411) | data or information resource, project portal, portal | University of Washington project SimBA for analysis of complex social behaviors.Used for automated behavioral scoring. Includes open source software toolkit for computer classification of complex social behaviors in experimental animals. Uses data from popular open source tracking tools in combination with small amount of behavioral annotations to create supervised machine learning classifiers that can then rapidly and accurately score behaviors across different background settings and lighting conditions. | Complex social behaviors classifications, supervised behavioral classifiers development, score behaviors across different background settings, OpenBehavior |
is listed by: OpenBehavior is related to: Simple Behavior Analysis has parent organization: University of Washington; Seattle; USA |
DOI:10.1101/2020.04.19.049452 | Free, Freely available | SCR_021411 | Simple Behavior Analysis, SimBA | 2026-02-16 09:50:01 | 0 | ||||||||
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ezTrack project Resource Report Resource Website |
ezTrack project (RRID:SCR_021418) | data or information resource, project portal, portal | Project related to behavior analysis.Mt.Sinai scientist developed open source video analysis pipeline for investigation of animal behavior.Used to track location, motion, and freezing of animal. | Track animal location, track motion, track animal freezing, OpenBehavior |
is listed by: OpenBehavior is related to: ezTrack has parent organization: Icahn School of Medicine at Mount Sinai; New York; USA |
DOI:10.1038/s41598-019-56408-9 | Free, Freely available | SCR_021418 | ezTrack | 2026-02-16 09:50:02 | 0 | ||||||||
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FreemoVR project Resource Report Resource Website 1+ mentions |
FreemoVR project (RRID:SCR_021551) | data or information resource, project portal, portal | Portal related to virtual reality for freely moving animals.Provides virtual reality system set up for unrestrained animals.System developed by University of Frieburg scientists. This Virtual Reality system can be used with number of different species including mice, zebrafish, and Drosophila. | Virtual reality system, unrestrained animals, behavior, brain function, OpenBehavior |
is listed by: OpenBehavior is related to: FreemoVR has parent organization: University of Freiburg; Baden-Wurttemberg; Germany |
DOI:10.1038/nmeth.4399 | Free, Freely available | SCR_021551 | FreemoVR | 2026-02-16 09:50:04 | 2 | ||||||||
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DeepLabCut Project Resource Report Resource Website 50+ mentions |
DeepLabCut Project (RRID:SCR_021398) | data or information resource, project portal, portal | Project for markerless pose estimation of user defined body parts with deep learning. | OpenBehavior, animal pose estimation, markerless pose estimation, body parts, multi-animal pose estimation, B-SoID, Stytra, Kinemouse Wheel |
lists: DeepLabCut is listed by: OpenBehavior is related to: Anipose |
DOI:10.1038/s41593-018-0209-y | Free, Available for download, Freely Available | https://github.com/DeepLabCut/DeepLabCut | SCR_021398 | 2026-02-16 09:50:01 | 56 | ||||||||
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Pyper project Resource Report Resource Website |
Pyper project (RRID:SCR_021431) | data or information resource, project portal, portal | Project related to motion tracking of specimen in open field. Provides software tool for motion tracking.Used to track path of object of interest in live feed from camera or recorded video. Used to track rodents in open field maze as well as retina of mice.New version of Pyper allows to customise image processing to track different kind of objects. | Motion tracking, open field, track path of object, live feed from camera, live feed recorded video, track rodents, open field maze, OpenBehavior |
is listed by: OpenBehavior is related to: Pyper |
Free, Freely available | SCR_021431 | Pyper | 2026-02-16 09:50:01 | 0 | |||||||||
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FaceMap project Resource Report Resource Website |
FaceMap project (RRID:SCR_021428) | data or information resource, project portal, portal | Project related to videographic processing of head fixed rodent behaviors. Provides software toolbox for unsupervised video analysis of rodent behavior. | Unsupervised video analysis, rodent behavior, videographic processing, head fixed rodent behavior, head fixed rodent, OpenBehavior |
is listed by: OpenBehavior is related to: FaceMap |
DOI:10.1101/306019 | Free, Freely available | SCR_021428 | FaceMap | 2026-02-16 09:50:01 | 0 | ||||||||
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ZebraTrack project Resource Report Resource Website |
ZebraTrack project (RRID:SCR_021429) | data or information resource, project portal, portal | Project related to distraction free behavioral acquisition. Provides imaging setup for distraction free behavioral acquisition with automated tracking using open source ImageJ software and workflow for extraction of behavioral endpoints of zebrafish. Used for online tracking of larval zebrafish at high framerates.Provides user interface to run experiments as well as flexible design to allow definition of arbitrary open- and closed- loop experiments. | Track freely swimming larval zebrafish, realtime larval zebrafish swimming, larval zebrafish tracking, distraction free behavioral acquisition, behavior measurement, freely moving, OpenBehavior | is listed by: OpenBehavior | DOI:10.1016/j.jneumeth.2016.07.004 | Free, Freely available | SCR_021429 | ZebraTrack | 2026-02-16 09:50:02 | 0 |
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