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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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Open Ephys Resource Report Resource Website 1+ mentions |
Open Ephys (RRID:SCR_021624) | nonprofit organization | Organization mission is to advance understanding of brain by promoting community ownership of neuroscience tools.Collaborative effort to develop, document, and distribute open source tools for systems neuroscience.Project aims to distribute reliable open source software as well as tools for extracellular recording and stimulation. | develop open source tools, distribute open source tools, neuroscience tools, OpenBehavior | is listed by: OpenBehavior | DOI:10.1088/1741-2552/aa651f | SCR_021624 | Open Ephys | 2026-02-14 02:04:18 | 6 | |||||||||
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Open Source Whisking Video Database Resource Report Resource Website |
Open Source Whisking Video Database (RRID:SCR_021407) | data or information resource, database | Shared database of videos featuring juvenile and adult male rats and adult male mice exploring stationary objects.This dataset includes wide variety of experimental conditions including genetic, pharmacological, and sensory deprivation interventions to explore how active sensing behavior is modulated by different factors. Database of high speed videos of whisking behavior in freely moving rodents.Open source high speed infrared videography database to study principles of active sensing in freely navigating rodents. | High speed videos, whisking behavior, freely moving rodents, infrared videography database, active sensing, OpenBehavior |
is listed by: OpenBehavior is related to: Open Source Whisking Video Database portal |
DOI:10.1093/gigascience/giy134 | Free, Freely available | https://edspace.american.edu/openbehavior/project/open-source-whisking-video-database/ | SCR_021407 | 2026-02-14 02:06:49 | 0 | ||||||||
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Implant for Reliable Diaphragm EMG Recordings in Awake, Behaving Rats Resource Report Resource Website |
Implant for Reliable Diaphragm EMG Recordings in Awake, Behaving Rats (RRID:SCR_026968) | instrument resource | Low-cost implant for reliable diaphragm EMG recordings in awake, behaving rats.Diaphragm EMG implant. | OpenBehavior, low-cost implant, diaphragm EMG implant, diaphragm EMG recordings, awake, behaving rats, electromyography, | is listed by: OpenBehavior | PMID:39890457 | https://edspace.american.edu/openbehavior/project/an-implant-for-diaphragm-emg-recordings-in-awake-rats/ | SCR_026968 | 2026-02-14 02:09:47 | 0 | |||||||||
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One-rat Turnstile Resource Report Resource Website |
One-rat Turnstile (RRID:SCR_025570) | ORT | instrument resource | Open-source apparatus to enable continuous individual monitoring, training, and testing of rats without removing them from their social environment. This system utilizes RFID technology to track individual animals, minimizing human intervention and providing precise behavioral data. | OpenBehavior, apparatus, continuous individual monitoring, training, testing, rat, without removing from social environment, | is listed by: OpenBehavior | PMID:38557586 | SCR_025570 | One-rat Turnstile (ORT) | 2026-02-14 02:09:20 | 0 | ||||||||
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LED Zappelin’ Resource Report Resource Website |
LED Zappelin’ (RRID:SCR_022560) | data or information resource, topical portal, portal | Open source LED controller for arbitrary spectrum visual stimulation and optogenetics during 2 photon imaging. Device that rapidly time interleaves stimulation and detection epochs during two photon imaging. | Instrument, OpenBehavior, LED controller, arbitrary spectrum visual stimulation, optogenetics, two photon imaging, stimulation and detection, behavioral neuroscience |
is listed by: OpenBehavior has parent organization: University of Sussex; Brighton; United Kingdom |
PMID:35498254 | Free, Freely available | https://edspace.american.edu/openbehavior/project/led-zappelin/ | SCR_022560 | 2026-02-15 09:22:53 | 0 | ||||||||
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Live Mouse Tracker Toolkit Analysis Resource Report Resource Website |
Live Mouse Tracker Toolkit Analysis (RRID:SCR_024592) | LMT Toolkit | web application, software resource | Open source web application created to analyze Live Mouse Tracker data easily and intuitively. Used to check reliability and to make some analysis of data from Live Mouse Tracker experiments. LMT stores data in SQLite files that requires some computer skills, but LMT-toolkit makes it easy to compute and extract behavioral profiles for each animal tested following step-by-step process. | OpenBehavior, check LMT data reliability, analyze Live Mouse Tracker data, compute and extract behavioral profiles, |
is listed by: OpenBehavior is related to: Live Mouse Tracker analysis is related to: Live Mouse Tracker project |
Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/live-mouse-tracker/ | SCR_024592 | , LMT Toolkit, lmt toolkit analysis, LMT toolkit analysis, LMT-toolkit, LMT-Toolkit Analysis, Live Mouse Tracker Toolkit | 2026-02-15 09:22:45 | 0 | |||||||
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Autonomous Training of a Forelimb Motor Task Resource Report Resource Website |
Autonomous Training of a Forelimb Motor Task (RRID:SCR_021603) | source code, software resource | Software Python tool running on Raspberry Pi computer. Used for trial timing and data logging. Part of Autonomous Training of Forelimb Motor Task system. | Custom Python tool, task difficulty, trial timing, data logging, OpenBehavior |
is listed by: OpenBehavior is related to: Autonomous Training of a Forelimb Motor Task project |
DOI:10.1152/jn.00115.2017 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/autonomous-training-forelimb-motor-task/ | SCR_021603 | 2026-02-15 09:22:38 | 0 | ||||||||
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Operant Box for Auditory Tasks Resource Report Resource Website |
Operant Box for Auditory Tasks (RRID:SCR_021604) | source code, software resource | Software tool as part of Operant Box for Auditory Tasks system. | Operant Box, Auditory Tasks, OpenBehavior |
is listed by: OpenBehavior is related to: Operant Box for Auditory Tasks project |
DOI:10.3758/s13428-017-0906-6 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/operant-box-auditory-tasks-obat/ | SCR_021604 | 2026-02-15 09:22:33 | 0 | ||||||||
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Markerless Mouse Tracking for Social Experiments Resource Report Resource Website |
Markerless Mouse Tracking for Social Experiments (RRID:SCR_025368) | MaSoMoTr | source code, software resource | Markerless video-based tool to simultaneously track two interacting mice of the same appearance in controlled settings for quantifying behaviors such as different types of sniffing, touching, and locomotion to improve tracking accuracy under these settings without increased human effort. It incorporates conventional handcrafted tracking and deep-learning-based techniques. The tool is trained on small number of manually annotated images from basic experimental setup and outputs body masks and coordinates of the snout and tail-base for each mouse. | OpenBehavior, simultaneously track two interacting mice, controlled settings for quantifying behaviors, sniffing, touching, locomotion, | is listed by: OpenBehavior | DOI:10.1523/ENEURO.0154-22.2023 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/masomotr/ | SCR_025368 | 2026-02-15 09:23:50 | 0 | |||||||
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GoFish Ajuwon etal 2022 Resource Report Resource Website 1+ mentions |
GoFish Ajuwon etal 2022 (RRID:SCR_022511) | source code, software resource | Bonsai code for running GOFish platform for behavioural experiments in fish. | Bonsai code, running GOFish platform, behavioural experiments in fish, OpenBehavior | is listed by: OpenBehavior | DOI:10.1101/2022.04.04.486957 | Free, Available for download, Freely available | SCR_022511 | GoFish_Ajuwon_etal_2022 | 2026-02-15 09:22:55 | 2 | ||||||||
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Pipette Finding CNN Resource Report Resource Website |
Pipette Finding CNN (RRID:SCR_024992) | source code, software resource | Software application for convolutional neural network that assesses pipette positioning before patch clamp is begun to minimize patch clamping errors in electrophysiology experiments. Used for detecting pipette positioning and making patch clamping procedures. | OpenBehavior, convolutional neural network, pipette positioning assessement, minimize patch clamping errors, electrophysiology experiments, detecting pipette positioning, making patch clamping procedures, | is listed by: OpenBehavior | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/pipette-finding-cnn/ | SCR_024992 | Pipette Finding Convolutional Neural Network | 2026-02-15 09:23:52 | 0 | ||||||||
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Custom-fitting-of-implants Resource Report Resource Website |
Custom-fitting-of-implants (RRID:SCR_025270) | source code, software resource | Tutorial to custom-design and -fit implants to continuous and discontinuous skull surfaces. Universal Guide for Skull Extraction and Custom-Fitting of Implants to Continuous and Discontinuous Skulls. | OpenBehavior, Cranial Implants, Skull Extraction, Custom-Fitting of Implants, Continuous and Discontinuous Skulls, | is listed by: OpenBehavior | PMID:35641225 | https://edspace.american.edu/openbehavior/project/cranial-implants/ | SCR_025270 | custom-fitting cranial implants | 2026-02-15 09:22:57 | 0 | ||||||||
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LiftPose3D Resource Report Resource Website |
LiftPose3D (RRID:SCR_023049) | software application, software resource | Software tool for transforming 2D poses to 3D coordinates on labaratory animals. Used for kinematic studies of laboratory animals. Tracking movements in three dimensions from behaving flies, mice, rats, and non-human primates. | OpenBehavior, transforming 2D poses to 3D coordinates, kinematic studies, laboratory animals, tracking movements | is listed by: OpenBehavior | SNSF Project ; SNSF Eccellenza ; European Union Horizon 2020 ; Mexican National Council for Science and Technology |
PMID:34354294 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/?s=LiftPose3D | SCR_023049 | 2026-02-15 09:22:22 | 0 | |||||||
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M3 Platform Resource Report Resource Website |
M3 Platform (RRID:SCR_023425) | software application, software resource | Software neuroscience laboratory environment for simultaneous neuronal imaging and behavioral monitoring. McGill-Mouse-Miniscope Touchscreen Behavior Platform. Standardized approach for high throughput imaging of neuronal dynamics during behavior. | OpenBehavior, touchscreen behavioral platform, calcium imaging, animal behavioral testing.standardized measurements, neuronal activity, behavioral tasks, disease modeling, mice | is listed by: OpenBehavior | Canada First Research Excellence Fund | PMID:32691490 | Free, Available for download, Freely available, | https://edspace.american.edu/openbehavior/project/m3-platform-the-mcgill-mouse-miniscope-touchscreen-behavior-platform/ | SCR_023425 | McGill-Mouse-Miniscope (M3) Platform, McGill-Mouse-Miniscope platform | 2026-02-15 09:23:10 | 0 | ||||||
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LabNet Resource Report Resource Website |
LabNet (RRID:SCR_023712) | software application, software resource | Open source software for parallel control over multiple behavioral systems.C++ optimized control layer software to give access to Raspberry Pi connected hardware. Suitable for time critical operations, and to be simple to expand. Used for general automation in experimental laboratories with its control PC located at some distance. | OpenBehavior, parallel control over multiple behavioral systems, C++ optimized control layer, access to Raspberry Pi connected hardware, | is listed by: OpenBehavior | German Research Foundation | PMID:36583654 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/labnet/ | SCR_023712 | 2026-02-15 09:22:30 | 0 | |||||||
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Oculomatic Resource Report Resource Website |
Oculomatic (RRID:SCR_021525) | data acquisition software, software application, data processing software, software resource | Software tool for high speed eye tracking for Point Gray USB3.0 cameras.Oculomatic software tracks eye position within acquired image frame at frame rate dictated by image sensor. | High speed eye tracking, Point Gray USB3.0 camera, Oculomatic Eye Tracking system, track eye movements, OpenBehavior |
is listed by: OpenBehavior is related to: Oculomatic Eye Tracking project |
DOI:10.1016/j.jneumeth.2016.06.016 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/oculomatic-eye-tracking/ | SCR_021525 | Oculomatic eye tracking | 2026-02-16 09:50:03 | 0 | |||||||
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Camera Control Resource Report Resource Website |
Camera Control (RRID:SCR_021614) | software resource, software toolkit | Open source software package that allows video to be recorded in sync with behavior. Python GUI and scripts allows investigators to record from multiple imaging source camera feeds with associated timestamps for each frame. Python API to record video system timestamps from Imaging Source USB cameras. Package requires Windows 10, Anaconda, and Git, and is compatible with Imaging Source USB3 cameras. Part of Camera Control project. | Multiple imaging, source camera feeds, , record video system timestamps, Imaging Source USB cameras, OpenBehavior |
is listed by: OpenBehavior is related to: Camera Control project |
Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/camera-control/ | SCR_021614 | Camera_Control | 2026-02-16 09:50:07 | 0 | ||||||||
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AutomaticSleepScoringTool Resource Report Resource Website |
AutomaticSleepScoringTool (RRID:SCR_022300) | software resource, software toolkit | Software pipeline for sleep researchers to perform automatic sleep scoring for rodents. Artificial neural network for automated behavioral state classification in rats. | Artificial neural network, classifying behavioral states in rats, automatic sleep scoring, rat, electrophysiological readings, OpenBehavior | is listed by: OpenBehavior | DOI:10.7717/peerj.12127 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/automaticsleepscoringtool/ | SCR_022300 | 2026-02-16 09:50:13 | 0 | ||||||||
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Dual Port Lick Detector Resource Report Resource Website |
Dual Port Lick Detector (RRID:SCR_021521) | software resource, software toolkit | Distribution package for Dual Port Lick Detector.Package includes files relevant to building lick detector. | Building lick detector files, lick detector, OpenBehavior |
is listed by: OpenBehavior is related to: Dual port Lick Detector project |
DOI:10.1152/jn.00500.2018 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/dual-port-lick-detector/ | SCR_021521 | DP-Lick-Detector | 2026-02-16 09:50:03 | 0 | |||||||
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SHARCQ Resource Report Resource Website 1+ mentions |
SHARCQ (RRID:SCR_022498) | software resource, software toolkit | Software tools to register histological section images and cell count locations to mouse brain atlas. Semi automated workflow and GUI for automated brain slice histology alignment, registration, and cell quantification. Used to explore Allen Mouse Brain Atlas, register asymmetric slice images to atlas using manual input, and analyze region of interest data by registering locations of fluorescently labeled cells to standardized regions of Atlas. | OpenBehavior, atlas registration, brain mapping, cell-type, slicing, histology, cell quantification, automated, brain atlas, mice |
is listed by: OpenBehavior is related to: Allen Mouse Brain Reference Atlas is related to: Allen Institute for Brain Science has parent organization: University of Colorado Boulder; Colorado; USA |
PMID:35396257 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/sharcq/ | SCR_022498 | Slice Histology Alignment, and Cell Quantification, Registration | 2026-02-16 09:50:24 | 2 |
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