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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.

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Resource Name Proper Citation Abbreviations Resource Type Description Keywords Resource Relationships Related Condition Funding Defining Citation Availability Website Status Alternate IDs Alternate URLs Old URLs Parent Organization Resource ID Synonyms Record Last Update Mentions Count
DIY-NAMIC project
 
Resource Report
Resource Website
DIY-NAMIC project (RRID:SCR_021489) data or information resource, project portal, portal, instrument resource Project is related to measurement of complex phenotypes in homecage. Homecage automated open source behavioral testing sytem to enable high throughput 24h testing of many standard operant paradigms. Using Arduino platform and easily sourced inexpensive components system can display light cues and dispense liquid rewards and has nosepoke receptacles with infrared detectors for operant responses, within homecage.Method provided by Dartmouth College scientists. Behavioral testing system, homecage, Arduino platform, dispense liquid rewards, nosepoke receptacles, infrared detectors, OpenBehavior, Instrument is listed by: OpenBehavior
has parent organization: Dartmouth College; New Hampshire; USA
DOI:10.1523/eneuro.0160-20.2020 Free, Freely available SCR_021489 DIY-NAMIC 2026-02-17 10:04:06 0
CapTouch project
 
Resource Report
Resource Website
CapTouch project (RRID:SCR_021488) data or information resource, project portal, portal, instrument resource Project related to study learning and memory in preclinical research.Included tracking system for object recognition tasks provides standardization across experiments and labs.Automates scoring process using capacitive sensors, while providing validated 3D-printed objects in order to standardize object recognition to study learning and memory in preclinical research.Used for accurate measurement of interaction time during object recognition tasks. Tracking system, object recognition tasks, standardization across experiments, automated scoring process, capacitive sensors, standardize object recognition, study learning and memory, accurate measurement, interaction time, OpenBehavior., Instrument is listed by: OpenBehavior DOI:10.1523/eneuro.0310-20.2020 Free, Freely available SCR_021488 CapTouch 2026-02-17 10:03:49 0
craniobot
 
Resource Report
Resource Website
craniobot (RRID:SCR_021609) source code, software resource, software toolkit Software tool as part of Craniobot system.Generates, sends, and receives commands to communicate with the Craniobot. Software resource, OpenBehavior is listed by: OpenBehavior
is related to: Craniobot project
DOI:10.1038/s41598-018-37073-w Free, Available for download, Freely Available https://edspace.american.edu/openbehavior/project/craniobot/ SCR_021609 craniobot 2026-02-17 10:03:26 0
Lick Instance Quantifier Home cage Device
 
Resource Report
Resource Website
1+ mentions
Lick Instance Quantifier Home cage Device (RRID:SCR_023802) LIQ HD source code, software resource, instrument resource Arduino code, 3D print design files, and tutorial video on how to build LIQ HD system. Open source tool for recording undisturbed two-bottle drinking behavior in home cage environment. All designs and software are open source to allow other researchers to build on the system and adapt LIQ HD to their animal home cages. OpenBehavior, LIQ HD system, recording behavior, undisturbed two-bottle drinking behavior, is listed by: OpenBehavior PMID:36997312 Free, Available for upload, Freely available https://edspace.american.edu/openbehavior/project/liq-hd/ SCR_023802 , LIQ HD system, LIQ HD: Lick Instance Quantifier Home cage Device 2026-02-17 10:04:32 2
BrainWAVE
 
Resource Report
Resource Website
1+ mentions
BrainWAVE (RRID:SCR_024396) source code, software resource, instrument resource Code to program and run flicker stimulation on BrainWAVE stimulator device. This brain oscillation stimulating software can be adapted across subjects and integrated into variety of experimental designs like electrophysiology, neuroimaging, EEG, MRI. Flexible method for noninvasive stimulation of brain rhythms across species. Used to measure effects of rhythmic brain activity on behavior. OpenBehavior, Open source, noninvasive sensory flicker, deep brain stimulation, BrainWAVE stimulator device, measure effects of rhythmic brain activity, behavior is listed by: OpenBehavior PMID:36754625 Free, Available for download, Freely available https://edspace.american.edu/openbehavior/project/brainwave/ SCR_024396 , Brain Wide-spectrum Audio/Visual Exposure, BrainWAVE: Noninvasive Rhythm Stimulation 2026-02-17 10:04:09 6
Rasberry rat
 
Resource Report
Resource Website
1+ mentions
Rasberry rat (RRID:SCR_023467) software resource, software repository Software Python platform for recording, converting, and uploading videos to cloud and for performing scheduled video recordings. Repository also includes wiki section with comprehensive guide to setting up Raspberry Pis for this purpose. Raspberry Pis are often cheaper than camcorder and can produce HD video. They are also equipped with infrared camera, making them ideal for recordings of animals that are active in low light conditions. recording, converting, uploading, videos, video recordings, seting up and recording home cage videos, OpenBehavior, is listed by: OpenBehavior https://edspace.american.edu/openbehavior/project/raspberry_rat/
https://github.com/lapphe/raspberry_rat/wiki
SCR_023467 Rasberry_rat 2026-02-17 10:04:35 3
HFOApp
 
Resource Report
Resource Website
HFOApp (RRID:SCR_024864) data analysis software, software application, data processing software, software resource Software for detecting and identifying high frequency oscillations observed in EEG recordings. MATLAB based graphical user interface for High Frequency Oscillation marking. OpenBehavior, High Frequency Oscillation marking, detecting and identifying high frequency oscillations, EEG recordings, is listed by: OpenBehavior PMID:34544760 Free, Available for download, Freely available https://edspace.american.edu/openbehavior/project/hfoapp/ SCR_024864 High Frequency Oscillation App 2026-02-17 10:04:53 0
PyBehave
 
Resource Report
Resource Website
PyBehave (RRID:SCR_025406) software application, source code, software resource Open source software interface and framework for controlling behavioral experiments in neuroscience and psychology. Python-based framework for designing and controlling behavioral experiments in animals. Used to develop, perform, and control behavioral tasks. OpenBehavior, controlling behavioral experiments, neuroscience and psychology experiments, control behavioral tasks, behavioral experiments in animals, is listed by: OpenBehavior Free, Available for download, Freely available https://edspace.american.edu/openbehavior/project/pybehave/ SCR_025406 2026-02-17 10:05:00 0
ghostipy
 
Resource Report
Resource Website
ghostipy (RRID:SCR_026231) software application, time-series analysis software, data processing software, data analysis software, source code, software resource, 1d time-series analysis software Software signal processing and spectral analysis toolbox designed for local field potential recordings. OpenBehavior, neuroscience, signal processing, spectral analysis, local field potential recordings, is listed by: OpenBehavior DOI:10.1523/ENEURO.0202-21.2021 Free, Available for download, Freely available https://edspace.american.edu/openbehavior/project/ghostipy/ SCR_026231 2026-02-17 10:05:14 0
SaLSa
 
Resource Report
Resource Website
SaLSa (RRID:SCR_026182) source code, software resource, software toolkit Software MATLAB package for analyzing and categorizing behaviors using pose estimation data. Integrates semi-automatic labeling with machine learning, specifically Long Short-Term Memory neural networks, to classify behavioral "syllables” (distinct, repeatable behaviors). Combinatory approach of semi-automatic labeling and long short-term memory to classify behavioral syllables. OpenBehavior, semi-automatic labeling, long short-term memory, classify behavioral syllables, behavior, pose estimation data, is listed by: OpenBehavior PMID:37989587 Free, Available for download, Freely available https://edspace.american.edu/openbehavior/project/salsa/ SCR_026182 2026-02-17 10:04:28 0
ArUco
 
Resource Report
Resource Website
10+ mentions
ArUco (RRID:SCR_026572) source code, software resource, instrument resource Automated rodent behavioral scoring system, complete with 3D design files and code/software. System monitors behavioral engagement using open-source software. 3D design files and necessary software has been made available, as well as code that can be used for data analysis. OpenBehavior, Aruco marker based tracking, pose estimation, rodent behavioral session, is listed by: OpenBehavior NINDS R01NS110823;
United States (US) Department of Veterans Affairs Rehabilitation Research and Development Service ;
University of Texas at Dallas
DOI:10.1523/ENEURO.0500-23.2024 Free, Available for download, Freely available https://edspace.american.edu/openbehavior/project/aruco-markers/ SCR_026572 Augmented Reality University of Cordoba, Aruco 2026-02-17 10:04:32 14
tmilltracker
 
Resource Report
Resource Website
tmilltracker (RRID:SCR_023511) software resource Open source computer vision controlled treadmill system for small running animals such as insects and mice. Treadmill is controlled by Python software, allowing for flexible control of video tracking parameters, behavioral triggers, distance ran, and feedback. Used for studying locomotor behavior. OpenBehavior, treadmill system, running animals, locomotor behavior, video tracking parameters, behavioral triggers, distance ran, is listed by: OpenBehavior Royal Society Research ;
Nuffield Foundation Science Bursary Programme ;
BBSRC Research Experience Placement
DOI:10.1016/j.jneumeth.2013.03.009 Free, Available for download, Freely available https://edspace.american.edu/openbehavior/project/tmilltracker/ SCR_023511 2026-02-14 02:04:49 0
Automated 2 Photon Imaging Compatible Platform for Assessing Working Memory
 
Resource Report
Resource Website
Automated 2 Photon Imaging Compatible Platform for Assessing Working Memory (RRID:SCR_023463) instrument resource Open source automated platform for assessing working memory and prefrontal circuit function. Designed for automated, high-throughput assessments of working memory and simultaneous two-photon imaging in chronic stress studies. Physiology compatible behavioral platform designed specifically for studying circuit mechanisms underlying working memory and related cognitive functions in chronic stress states. OpenBehavior, instrument, assessing working memory, prefrontal circuit function, chronic stress, behavioral platform, is listed by: OpenBehavior DOI:10.1016/j.ynstr.2023.100518 SCR_023463 Automated 2-Photon Imaging-Compatible Platform for Assessing Working Memory 2026-02-14 02:05:11 0
3D Printed Multi Pump System
 
Resource Report
Resource Website
3D Printed Multi Pump System (RRID:SCR_023575) instrument resource System includes 3D Printed Syringe Pump Rack composed by 5 Syringe Pumps to have 2 continuous flow systems and one remaining pump. Syringe Pump is used to gradually administer small amounts of fluid to patient or for use in chemical and biomedical research. Main features include Open hardware/software, Extremely compact size ( 7cm movement range ), High precision lead screw and nut, Simple to use (command line interface), Simple to replicate, Minimal clean Design. 3D Printed Syringe Pump Rack, Syringe Pumps, continuous flow system, OpenBehavior is listed by: OpenBehavior Freely available, Available for download, https://edspace.american.edu/openbehavior/project/3d-printed-multi-pump-system/ SCR_023575 3D Printed Syringe Pump Rack 2026-02-14 02:05:07 0
RatHeadphones
 
Resource Report
Resource Website
RatHeadphones (RRID:SCR_023667) software resource Repository for highly controlled sound presentation in freely moving rats. Provides all necessary information for building, adjusting, and using Ratphones to reliably present auditory stimulation to freely moving rats. Used for 3D printing of headphones designed for auditory psychophysics in behaving rats. OpenBehavior, instrument, highly controlled sound presentation, freely moving rats, auditory stimulation, 3D headphones printing, auditory psychophysics, behaving rats, is listed by: OpenBehavior Champalimaud Foundation ;
Marie Curie Career Integration Grant ;
Human Frontier Science Program ;
EU FP7 Grant
DOI:10.1523/ENEURO.0028-23.2023 Free, Available for download, Freely available https://edspace.american.edu/openbehavior/project/ratphones/ SCR_023667 Ratphones 2026-02-14 02:04:50 0
Low Cost Open Source Eye Tracking
 
Resource Report
Resource Website
Low Cost Open Source Eye Tracking (RRID:SCR_021497) software resource Software tool as part of system designed to be easy to build and setup for real time eye tracking.Open source software provides accurate eye tracking. Can identify shapes such as circles, lines, and triangles.You can rotate and mirror images and also use variety of filters.Capable of processing video in real-time for optical flow. App for viewing multiple video streams from USB cameras. Real time eye tracking, identify shapes, identify circles, identify lines, identify triangles, fixed point laser beacons, camera, processing video in real time, OpenBehavior is listed by: OpenBehavior
is related to: Low Cost Open Source Eye Tracking project
Free, Freely available https://edspace.american.edu/openbehavior/project/low-cost-eye-tracking/ SCR_021497 CameraMultiViewer 2026-02-14 02:04:19 0
openEyeTrack
 
Resource Report
Resource Website
1+ mentions
openEyeTrack (RRID:SCR_021401) software resource Open source software tool used as part of multithreaded eye tracker.Video based eye tracker. Multithreaded eye tracker, tracking eye position system, head fixed application, OpenBehavior is listed by: OpenBehavior
is related to: openEyeTrack project
DOI:10.21105/joss.01631 Free, Freely available https://edspace.american.edu/openbehavior/project/openeyetrack/ SCR_021401 2026-02-14 02:04:18 1
NINscope software
 
Resource Report
Resource Website
NINscope software (RRID:SCR_021583) software resource Sofware tool for use with NINscope. Software resource, OpenBehavior is listed by: OpenBehavior
is related to: NINscope
DOI:10.7554/elife.49987 Free, Available for download, Freely Available https://edspace.american.edu/openbehavior/project/ninscope/ SCR_021583 2026-02-14 02:04:45 0
OpenMV
 
Resource Report
Resource Website
OpenMV (RRID:SCR_021615) software resource Software tool as part of OpenMV system. OpenMV system, OpenBehavior is listed by: OpenBehavior
is related to: OpenMV project
Free, Available for download, Freely Available https://edspace.american.edu/openbehavior/project/openmv/ SCR_021615 2026-02-14 02:04:20 0
pyControl
 
Resource Report
Resource Website
1+ mentions
pyControl (RRID:SCR_021612) software resource Open source software Python tool for behavioural experiment control. Part of pyControl system. Software resource, OpenBehavior is listed by: OpenBehavior
is related to: pyControl project
Free, Available for download, Freely Available https://edspace.american.edu/openbehavior/project/pycontrol/ SCR_021612 2026-02-14 02:04:40 7

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