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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Breast Tissue Cell Lines Ontology Resource Report Resource Website |
Breast Tissue Cell Lines Ontology (RRID:SCR_006686) | MCBCC | data or information resource, ontology, controlled vocabulary | Ontology covering a comprehensive list of cell lines derived from breast tissue, both normal and pathological. The ontology in built in OWL with cross relation to classes- genetic variation, pathological condition, genes, chemicals and drugs. The relations built enable semantic query across different classes | owl | is listed by: BioPortal | nlx_157344 | SCR_006686 | 2026-02-17 10:01:06 | 0 | |||||||||
|
Resource of Asian Primary Immunodeficiency Diseases Phenotype Ontology Resource Report Resource Website |
Resource of Asian Primary Immunodeficiency Diseases Phenotype Ontology (RRID:SCR_006776) | RPO | data or information resource, ontology, controlled vocabulary | A controlled vocabulary of ontology class structures and entities of observed phenotypic terms for primary immunodeficiency diseases (PIDs) that facilitate global sharing and free exchange of PID data with users'' communities | owl | is listed by: BioPortal | Primary Immunodeficiency Disease | nlx_157576 | SCR_006776 | Resource of Asian Primary Immunodeficiency Diseases (RAPID) Phenotype Ontology, RAPID phenotype ontology | 2026-02-17 10:01:07 | 0 | |||||||
|
C. elegans Development Vocabulary Resource Report Resource Website |
C. elegans Development Vocabulary (RRID:SCR_006811) | WB-LS | data or information resource, ontology, controlled vocabulary | A structured controlled vocabulary of the development of Caenorhabditis elegans. | obo |
is listed by: BioPortal has parent organization: WormBase |
nlx_157346 | SCR_006811 | 2026-02-17 10:01:10 | 0 | |||||||||
|
C. elegans Phenotype Vocabulary Resource Report Resource Website |
C. elegans Phenotype Vocabulary (RRID:SCR_006924) | WB-PHENOTYPE | data or information resource, ontology, controlled vocabulary | A structured controlled vocabulary of Caenorhabditis elegans phenotypes. | obo |
is listed by: BioPortal has parent organization: WormBase |
nlx_157348 | SCR_006924 | 2026-02-17 10:01:10 | 0 | |||||||||
|
C. elegans Gross Anatomy Vocabulary Resource Report Resource Website |
C. elegans Gross Anatomy Vocabulary (RRID:SCR_006835) | WB-BT | data or information resource, ontology, controlled vocabulary | A structured controlled vocabulary of the anatomy of Caenorhabditis elegans. | obo |
is listed by: BioPortal has parent organization: WormBase |
nlx_157347 | SCR_006835 | 2026-02-17 10:00:59 | 0 | |||||||||
|
Brucellosis Ontology Resource Report Resource Website |
Brucellosis Ontology (RRID:SCR_006795) | IDOBRU | data or information resource, ontology, controlled vocabulary | A biomedical ontology in the domain of zoonotic disease brucellosis that is caused by Brucella, a facultative intracellular baterium. | owl | is listed by: BioPortal | Zoonotic disease brucellosis | nlx_157345 | http://www.phidias.us/bbp/idobru/index.php | SCR_006795 | 2026-02-17 10:01:07 | 0 | |||||||
|
Human Disease Ontology Resource Report Resource Website 1+ mentions |
Human Disease Ontology (RRID:SCR_000476) | DO | data or information resource, ontology, database, controlled vocabulary | Comprehensive hierarchical controlled vocabulary for human disease representation.Open source ontology for integration of biomedical data associated with human disease. Disease Ontology database represents comprehensive knowledge base of inherited, developmental and acquired human diseases. | obo, pathological, organismal, cellular, disease, biomedical, health, neurologic disease, neurological disorder, phenotype, bio.tools, |
is used by: DOAF is listed by: BioPortal is listed by: OBO is listed by: bio.tools is listed by: Debian is related to: PharmGKB Ontology is related to: GWASdb is related to: NUgene Project is related to: FunDO is related to: Neurocarta has parent organization: University of Maryland School of Medicine; Maryland; USA |
NHGRI U24 HG012557 | PMID:22080554 | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-35926, nlx_157432, SCR_003491, biotools:disease_ontology | http://disease-ontology.org/ https://bio.tools/disease_ontology http://purl.obolibrary.org/obo/doid.obo |
http://do-wiki.nubic.northwestern.edu/index.php/Main_Page | SCR_000476 | Human Disease Ontology Knowledgebase, Disease Ontology | 2026-02-17 09:59:27 | 5 | |||
|
Porifera Ontology Resource Report Resource Website 1+ mentions |
Porifera Ontology (RRID:SCR_000134) | PORO | data or information resource, ontology, controlled vocabulary | An ontology covering the anatomy of Porifera (sponges). | owl, anatomy |
is listed by: BioPortal is listed by: OBO is listed by: Google Code is listed by: Ontobee is related to: Information Artifact Ontology |
Free, Available for download, Freely available | nlx_157558 | https://code.google.com/p/porifera-ontology/ http://purl.bioontology.org/ontology/PORO http://purl.obolibrary.org/obo/poro.owl |
http://purl.obolibrary.org/obo/poro | SCR_000134 | 2026-02-17 09:59:24 | 1 | ||||||
|
Time Event Ontology Resource Report Resource Website |
Time Event Ontology (RRID:SCR_000310) | TEO | data or information resource, ontology, controlled vocabulary | Ontology for representing events, time, and their relationships. | owl | is listed by: BioPortal | nlx_157610 | SCR_000310 | 2026-02-17 09:59:26 | 0 | |||||||||
|
Variation Ontology Resource Report Resource Website |
Variation Ontology (RRID:SCR_000311) | VARIO | data or information resource, ontology, controlled vocabulary | An ontology for standardized, systematic description of effects, consequences and mechanisms of variations. | obo | is listed by: BioPortal | nlx_157622 | SCR_000311 | 2026-02-17 09:59:26 | 0 | |||||||||
|
Semantic DICOM Ontology Resource Report Resource Website |
Semantic DICOM Ontology (RRID:SCR_000309) | SEDI | data or information resource, ontology, controlled vocabulary | An ontology for DICOM as used in the SeDI project. | owl | is listed by: BioPortal | nlx_157583 | SCR_000309 | 2026-02-17 09:59:26 | 0 | |||||||||
|
Phylogenetic Ontology Resource Report Resource Website |
Phylogenetic Ontology (RRID:SCR_000912) | PHYLONT | data or information resource, ontology, controlled vocabulary | Ontology for Phylogenetic Analysis | owl | is listed by: BioPortal | nlx_157550 | SCR_000912 | 2026-02-17 09:59:33 | 0 | |||||||||
|
Amphibian Taxonomy Ontology Resource Report Resource Website |
Amphibian Taxonomy Ontology (RRID:SCR_000906) | ATO | data or information resource, ontology, controlled vocabulary | A taxonomy of Amphibia | obo | is listed by: BioPortal | nlx_157317 | SCR_000906 | 2026-02-17 09:59:32 | 0 | |||||||||
|
Anatomic Pathology Lexicon Resource Report Resource Website |
Anatomic Pathology Lexicon (RRID:SCR_000907) | PATHLEX | data or information resource, ontology, controlled vocabulary | A comprehensive lexicon - a unified language of anatomic pathology terms - for standardized indexing and retrieval of anatomic pathology information resources. | owl | is listed by: BioPortal | nlx_157318 | SCR_000907 | 2026-02-17 09:59:33 | 0 | |||||||||
|
HIV ontology Resource Report Resource Website |
HIV ontology (RRID:SCR_000908) | HIV | data or information resource, ontology, controlled vocabulary | Ontology that encompasses all knowledge about HIV | obo | is listed by: BioPortal | HIV | nlx_157422 | SCR_000908 | 2026-02-17 09:59:33 | 0 | ||||||||
|
Bleeding History Phenotype Ontology Resource Report Resource Website |
Bleeding History Phenotype Ontology (RRID:SCR_001165) | BHO | data or information resource, ontology, controlled vocabulary | An application ontology devoted to the standardized recording of phenotypic data related to hemorrhagic disorders. | owl | is listed by: BioPortal | Hemorrhagic disorder | nlx_157338 | SCR_001165 | 2026-02-17 09:59:36 | 0 | ||||||||
|
Body System Terms from ICD11 Resource Report Resource Website |
Body System Terms from ICD11 (RRID:SCR_001252) | ICD11-BODYSYSTEM | data or information resource, ontology, controlled vocabulary | Ontology of a set of body-system terms used in the ICD (International Classification of Diseases) 11 revision | owl | is listed by: BioPortal | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_157339 | SCR_001252 | 2026-02-17 09:59:35 | 0 | ||||||||
|
Biological Pathways Exchange Resource Report Resource Website 50+ mentions |
Biological Pathways Exchange (RRID:SCR_001681) | ontology, data or information resource, project portal, controlled vocabulary, portal | Community standard for pathway data sharing. Standard language that aims to enable integration, exchange, visualization and analysis of biological pathway data. Supports data exchange between pathway data groups and thus reduces complexity of interchange between data formats by providing accepted standard format for pathway data. Open and collaborative effort by community of researchers, software developers, and institutions. BioPAX is defined in OWL DL and is represented in RDF/XML format.Uses W3C standard Web Ontology Language, OWL. | Standard language, community standard, pathway data sharing, biological pathway data, data exchange, W3C standard, Web Ontology Language, OWL, |
is listed by: BioPortal is related to: cPath is related to: Biofactoid is related to: PathGuide: the pathway resource list |
U.S. Department of Energy Workshop ; NHGRI P41HG004118 |
PMID:20829833 | Free, Available for download, Freely available | SCR_009881, nlx_157327, nif-0000-10171 | http://purl.bioontology.org/ontology/BP | SCR_001681 | BioPAX, BioPAX: Biological Pathways Exchange | 2026-02-17 09:59:44 | 90 | |||||
|
Teleost Anatomy Ontology Resource Report Resource Website 1+ mentions |
Teleost Anatomy Ontology (RRID:SCR_001610) | TAO | data or information resource, ontology, controlled vocabulary | A multi-species anatomy ontology for teleost fishes. It was originally seeded from ZFA, but covers terms relevant to other taxa. The TAO uses terms from the Common Anatomy Reference Ontology (CARO) as a template for its upper level nodes, and the Vertebrate Skeletal Anatomy Ontology (VSAO) for general skeletal anatomy classes. Growth of the TAO is enabled by contributions from data curators and the ichthyological community. The TAO can be browsed by using the NCBO BioPortal and data annotated using TAO terms can be queried using the Phenoscape Knowedgebase. | homology, anatomy, morphology, fish, obo, organismal, zebrafish anatomy |
uses: Zebrafish Anatomical Ontology uses: Common Anatomy Reference Ontology uses: Vertebrate Skeletal Anatomy Ontology is used by: Phenoscape Knowledgebase is listed by: BioPortal is listed by: OBO has parent organization: Phenoscape |
PMID:20547776 | Free, Freely available | nlx_153876 | http://purl.obolibrary.org/obo/tao.obo http://bioportal.bioontology.org/ontologies/38362?p=terms |
https://www.nescent.org/phenoscape/ | SCR_001610 | 2026-02-17 09:59:43 | 1 | |||||
|
SysMO JERM Ontology of Systems Biology for Micro-Organisms Resource Report Resource Website |
SysMO JERM Ontology of Systems Biology for Micro-Organisms (RRID:SCR_004569) | JERM | data or information resource, ontology, controlled vocabulary | An ontology to describe the entities and relationships in the SEEK database, a Systems Biology environment for the sharing and exchange of data and models. The SysMO-SEEK database contains the work of the SysMO consortium (Systems Biology of Micro-Organisms) https://seek.sysmo-db.org/ | owl |
is listed by: BioPortal has parent organization: SysMO-DB |
nlx_157602 | SCR_004569 | 2026-02-17 10:00:47 | 0 |
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