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URL: http://159.149.160.51/cscan/
Proper Citation: Cscan (RRID:SCR_006756)
Description: Data resource that includes a large collection of genome-wide ChIP-Seq experiments performed on transcription factors (TFs), histone modifications, RNA polymerases and others. Enriched peak regions from the ChIP-Seq experiments are crossed with the genomic coordinates of a set of input genes, to identify which of the experiments present a statistically significant number of peaks within the input genes' loci. The input can be a cluster of co-expressed genes, or any other set of genes sharing a common regulatory profile. Users can thus single out which TFs are likely to be common regulators of the genes, and their respective correlations. Also, by examining results on promoter activation, transcription, histone modifications, polymerase binding and so on, users can investigate the effect of the TFs (activation or repression of transcription) as well as of the cell or tissue specificity of the genes' regulation and expression.
Abbreviations: Cscan
Resource Type: analysis service resource, service resource, production service resource, database, data analysis service, data or information resource
Defining Citation: PMID:22669907
Keywords: regulator, gene, genome-wide chip-seq, chip-seq, gene, genome
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