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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Bpod Resource Report Resource Website 10+ mentions |
Bpod (RRID:SCR_015943) | software resource | Software for a measurement and control system for behavior research, most often used to implement operant (Go/NoGo, 2AFC) tasks. This software controls a hierarchy of hardware modules, each powered by an Arduino-programmable microcontroller. | sanworks, rodent, behavior, experiment, control, software, hardware, arduino, measurement | is listed by: OpenBehavior | Open source, Free, Available for download | https://github.com/sanworks/Bpod | SCR_015943 | 2026-02-07 02:09:21 | 34 | |||||||||
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Social LEAP Resource Report Resource Website 1+ mentions |
Social LEAP (RRID:SCR_021382) | SLEAP | software resource | Method for pose estimation that uses deep neural networks.Open source software tool as deep learning based framework for estimating positions of animal body parts.Supports multi animal pose estimation and tracking, and includes advanced labeling or training.SLEAP is next generation of LEAP and allows for tracking multiple animals. | Estimating positions, animal body parts, multi animal pose estimation, multi animal pose tracking, Princeton University, OpenBehavior |
is listed by: OpenBehavior is related to: SLEAP, LEAP and MotionMapper project has parent organization: Princeton University; New Jersey; USA |
NSF GRFP ; DGE 1148900;Princeton Porter Ogden Jacobus Fellowship;NIMH R00 MH109674;NIGMS DP2 GM137424;NSF ; DEB 1754476;R01 NS104899;NSF ; PHY 1734030; |
DOI:10.1101/2020.08.31.276246 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/sleap/ | SCR_021382 | Social LEAP Estimates Animal Pose | 2026-02-07 02:11:16 | 6 | |||||
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Pulse Pal Resource Report Resource Website |
Pulse Pal (RRID:SCR_021611) | software resource | Software tool as part of Pulse Pal system which allows users to create and trigger software defined trains of voltage pulses with high temporal precision. | voltage pulses, pulse train generator, OpenBehavior |
is listed by: OpenBehavior is related to: Pulse Pal project |
Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/pulse-pal/ | SCR_021611 | 2026-02-07 02:11:15 | 0 | |||||||||
|
SpikeGadgets Resource Report Resource Website 1+ mentions |
SpikeGadgets (RRID:SCR_021623) | commercial organization | Company to design and sell powerful neuroscience hardware that interfaces with open source software platform supported by large community of scientists and developers. Support efforts of open source community in commercially sustainable way. | Open Behavior | is listed by: OpenBehavior | SCR_021623 | SpikeGadgets | 2026-02-07 02:11:16 | 1 | ||||||||||
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FreemoVR Resource Report Resource Website |
FreemoVR (RRID:SCR_021601) | software resource | Software tool as virtual reality engine built on ROS and OpenSceneGraph.Perspective correct Virtual Reality for freely moving animals engine. Used for multicomputer realtime tracking and display with goal of being useful for scientific studies of vision and behavior.Part of FreemoVR system. | Virtual reality engine, ROS, OpenSceneGraph, OpenBehavior |
is listed by: OpenBehavior is related to: FreemoVR project |
DOI:10.1038/nmeth.4399 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/freemovr/ | SCR_021601 | freemovr_engine | 2026-02-07 02:11:15 | 0 | |||||||
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Modular Automated Platform for Large Scale Experiments Resource Report Resource Website |
Modular Automated Platform for Large Scale Experiments (RRID:SCR_021600) | software resource | Software tool to automate various fly handling tasks.Control software for Drosophila handling robot MAPLE. | Control Drosophila handling robot MAPLE, FlySorter fly manipulation platform control, OpenBehavior |
is listed by: OpenBehavior is related to: Modular Automated Platform for Large Scale Experiments project |
DOI:10.1101/239459 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/maple/ | SCR_021600 | MAPLEControlSoftware, MAPLE v2 Control Software | 2026-02-07 02:11:25 | 0 | |||||||
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poke device arduino Resource Report Resource Website |
poke device arduino (RRID:SCR_021608) | software resource | Software tool as script to test if IR led, IR photodiode, arduino and 3D printed nose poke device work properly. Part of Nose Poke Device system. | OpenBehavior, nose poke device, microcontroller code, electronic parts conrol |
is listed by: OpenBehavior is related to: Nose Poke Device |
Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/nose-poke-device/ | SCR_021608 | poke_device_arduino | 2026-02-07 02:11:25 | 0 | ||||||||
|
Hybrid-drive combining Optogenetics, Pharmacology, and Electrophysiology Resource Report Resource Website |
Hybrid-drive combining Optogenetics, Pharmacology, and Electrophysiology (RRID:SCR_021606) | software resource | Softwre tool as part of Hybrid-drive combining Optogenetics, Pharmacology, and Electrophysiology project for brain implant. | Software resource, OpenBehavior |
is listed by: OpenBehavior is related to: Hybrid-drive combining Optogenetics, Pharmacology, and Electrophysiology project |
DOI:10.3389/fncir.2018.00041 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/hope/ | SCR_021606 | hope | 2026-02-07 02:11:02 | 0 | |||||||
|
OORTT Resource Report Resource Website |
OORTT (RRID:SCR_022331) | software resource | Software Pyton scripts to run computerised task of Reaction Time. Scripts, together with their instructions and scoresheets.Used for assessment of RTs that is freely available, compatible with all operating systems, without license and activation costs, and based on open source software platform. | OpenBehavior, behavioral measurment, reaction time, assessment of reaction times, OpenSesame 3.1.9 | is listed by: OpenBehavior | DOI:10.1007/s10072-020-04839-y | Free, Available for download, Freely available | https://osf.io/xvcg6/ | SCR_022331 | Open source Open access Reaction Time Test | 2026-02-07 02:11:31 | 0 | |||||||
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Wheel Running Activity acQuisition Resource Report Resource Website |
Wheel Running Activity acQuisition (RRID:SCR_023353) | WRAQ | software resource | Open source microcontroller based system for wheel running activity in mice.Used to track circadian rhythms of rodents using microcontroller, powered by lithium polymer battery, and surveys exercise activity for up to 30 days. Data can be stored on microSD card or using online server using WiFi connection. Python software provides system interface with ActogramJ to analyze chronobiological aspects of data.Repository includes guide for installing integrated developmental environment and dependent libraries for building and setting up WRAQ systems - WRAQ and WRAQ-Wifi. WRAQ and WRAQ-WiFi are based on Adafruit Adalogger and DFRobot FireBeetle ESP32 connected to 4- and 8-bit binary counters receiving signal from reed switch attached to 5-inch flying saucer respectively. | OpenBehavior, instrument, building and setting up WRAQ systems, measure mouse wheel running activity, mouse wheel running, monitor wheel running activity, | is listed by: OpenBehavior | PMID:34479979 | Free, Freely available | https://edspace.american.edu/openbehavior/project/wraq/ | SCR_023353 | WRAQ system, Wheel Running Activity acQuisition system | 2026-02-07 02:12:12 | 0 | ||||||
|
CaT-z Resource Report Resource Website |
CaT-z (RRID:SCR_023399) | software resource | Software tool for 3D tracking and automatic classification of rodent behavior. Used for acquisition, annotation, and automatic behavioral profile characterization of laboratory rodents' RGB-D videos. Utilizes video segmentation, tracking of body parts, and automated classification of behaviors through machine learning and computer vision methods. Setup uses low costing RGB-D cameras for tracking behaviors in various environments. Software includes GUI interfaces for video acquisition, annotation, and processing of behavioral data. Software is capable of automated behavior detection with only 30 minutes of annotated video. | 3D tracking, automatic classification, rodent behavior, behavioral analysis, individual rats, automated behavior detection, OpenBehavior | is listed by: OpenBehavior | Portugal National Funds | DOI:10.3758/s13428-020-01381-9 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/cat-z/ | SCR_023399 | Classification and Tracking in depth (z) | 2026-02-07 02:12:13 | 0 | ||||||
|
JAX Animal Behavior System Resource Report Resource Website |
JAX Animal Behavior System (RRID:SCR_023721) | JABS | software resource | Video based phenotyping platform for laboratory mouse. Provides complete details of software and hardware, including 3D designs used for data collection. Data acquisition system consists of video collection hardware and software, behavior labeling and active learning app, and online database for sharing classifiers. Hardware and software solution collects high quality data for behavior analysis. | OpenBehavior, data acquisition system, integrated mouse phenotyping platform, behavior analysis, | is listed by: OpenBehavior | Jackson Laboratory Directors Innovation Fund ; NIDA DA041668; NIDA DA048634 |
DOI:10.1101/2022.01.13.476229 | Free, Available for download, Freely available | SCR_023721 | 2026-02-07 02:12:15 | 0 | |||||||
|
Customized Guide Cannulas Resource Report Resource Website |
Customized Guide Cannulas (RRID:SCR_023941) | instrument resource | Open source modular apparatus to produce guide cannulas exploiting 3D printing technology. Step by step procedure to realize hippocampal guide cannulas. 3D-printed guide cannula implant, as well as rotary tool based cutting station for fabrication of cannulae. Useful to conduct research in all the fields where access to brain areas is needed. | OpenBehavior, apparatus, 3D-printed guide cannula implant, produce guide cannulas, brain 3D printing, hippocampal guide cannulas, hippocampal guide cannulas procedure, neuroscience, | is listed by: OpenBehavior | PMID:36104275 | Free, Freely available | SCR_023941 | 2026-02-07 02:12:06 | 0 | |||||||||
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Customizable Multielectrode Array Resource Report Resource Website |
Customizable Multielectrode Array (RRID:SCR_024551) | CMEA | instrument resource | Simple, lightweight, and low cost customizable multielectrode array for Local Field Potential recordings. Used to collect LFP data from different brain regions simultaneously in rats. Can be modified to record single unit and multiunit activity in addition to LFP activity using both wired and wireless neural data acquisition systems. | OpenBehavior, instrument, multielectrode array, Local Field Potential Recordings, LFP recordings, collect LFP data, brain regions LFP data, record single unit and multiunit activity, wired neural data acquisition system, wireless neural data acquisition system, explore neural activity, | is listed by: OpenBehavior | Government of Canada Natural Sciences and Engineering Research Council of Canada | Free, Freely available | SCR_024551 | , CMEA: Customizable Multielectrode Arrays, 16-channel customizable multielectrode array | 2026-02-07 02:12:10 | 0 | |||||||
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MedParse Resource Report Resource Website |
MedParse (RRID:SCR_021528) | software resource, software application, data processing software | Software tool to read MedPC data into Python and Matlab. MedPC code for saving precise times of behavioral events and MatLab and Python functions to convert MedPC data into time event codes. | Read MedPC data, Python, Matlab, behavioral events, time event codes, OpenBehavior |
is listed by: OpenBehavior is related to: MedParse project |
Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/medparse/ | SCR_021528 | 2026-02-10 09:58:04 | 0 | |||||||||
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Variational Embedding of Animal Motion Resource Report Resource Website 1+ mentions |
Variational Embedding of Animal Motion (RRID:SCR_022477) | VAME | data visualization software, software resource, software application, data processing software | Software Python tool to cluster behavioral signals obtained from pose estimation tools. Unsupervised probabilistic deep learning framework capable of finding behavioral motifs in pose estimation data. Capable of augmenting quantitative behavioral analyses of data derived from standard pose-estimation software packages. Written based on core functions from DeepLabCut, and readily works with pose data from that package. Can also work with data from other pose estimation packages such as SLEAP. | OpenBehavior, vame, variational embedding of animal motion, pytorch, pose estimation |
is listed by: OpenBehavior is related to: DeepLabCut is related to: SLEAP, LEAP and MotionMapper project |
Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/vame/ | SCR_022477 | Variational Animal Motion Embedding, VAME: Variational Embedding of Animal Motion | 2026-02-10 09:58:16 | 2 | |||||||
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SipperViz Resource Report Resource Website |
SipperViz (RRID:SCR_022463) | data visualization software, software resource, software application, data processing software | Software Python GUI for graphing measures of liquid ingestion in rodents from Sippers. Python GUI for visualizing Sipper data. | graphing measures, rodents liquid ingestion, Sippers, visualizing Sipper data, OpenBehavior |
is listed by: OpenBehavior is related to: Automated Home Cage Rodent Two bottle Choice Test project |
Free, Available for download, Freely available | SCR_022463 | 2026-02-10 09:58:16 | 0 | ||||||||||
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Histological E data Registration in rodent Brain Spaces Resource Report Resource Website |
Histological E data Registration in rodent Brain Spaces (RRID:SCR_022776) | HERBS | data visualization software, software resource, software application, data processing software | Open source, extendable, intuitive and interactive software platform for image visualisation and image registration. Python based GUI for histological E-data registration in brain space. | OpenBehavior, image visualisation, image registration, histological E-data registration, brain space | is listed by: OpenBehavior | DOI:10.1101/2021.10.01.462770 | SCR_022781, https://edspace.american.edu/openbehavior/project/herbs/ | SCR_022776 | 2026-02-10 09:58:20 | 0 | ||||||||
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Online Animal Tracker Resource Report Resource Website 1+ mentions |
Online Animal Tracker (RRID:SCR_021412) | OAT | image processing software, software resource, software application, data processing software | Software tool as real time position tracker for behavioral research. Used for processing images, extracting object position information, and streaming data to disk and/or the network in real time. | Real time animal position tracking, experimental neuroscience, real time object tracking, processing images, extracting object position information, streaming data to disk, OpenBehavior |
is listed by: OpenBehavior is related to: Online Animal Tracker project |
Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/oat/ | SCR_021412 | 2026-02-10 09:58:02 | 2 | ||||||||
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Feeding Experimentation Device project Resource Report Resource Website 1+ mentions |
Feeding Experimentation Device project (RRID:SCR_015942) | FED | portal, topical portal, data or information resource | Flexible open-source device for measuring feeding behavior. FED measures food intake in mice. It is battery powered and designed to be used in rodent colony caging.Home cage-compatible feeding system that measures food intake with high accuracy and temporal resolution. FED offers alternative to commercial feeders, with convenience of use in tradition colony rack caging. | Feeding, food intake, optogenetic, behavioral data analysis, data analysis software, behavior apparatus, behavior rig, reward delivery, behavior measurement, homecage, Instrument, OpenBehavior |
is listed by: OpenBehavior has parent organization: Washington University in St. Louis; Missouri; USA |
NIH | PMID:27060385 | Commercially available | https://github.com/KravitzLab/FED1 https://edspace.american.edu/openbehavior/project/feeding-experimentation-device/ https://hackaday.io/project/72964-feeding-experimentation-device-fed-20 |
SCR_015942 | , FED1, FED2, Feeding Experimentation Device system, Feeding Experimentation Device | 2026-02-11 10:59:26 | 1 |
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