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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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PhenoSys Resource Report Resource Website 10+ mentions |
PhenoSys (RRID:SCR_004072) | PhenoSys | commercial organization | A research- and development-oriented company based in Berlin that engineers and markets technology for animal behavior research offering unique, automated instrumentation. This includes specialized applications of virtual reality and touch screen technology for animal behavior environments and RFID (transponder) operated devices in home cage environments. Their experimental systems are used for behavioral phenotyping, brain research, experimental psychology, and the diagnostic characterization of animal models for translational medicine. | animal behavior, behavior, virtual reality, learning, memory, cognition, navigation, touchscreen, tracking, emotion, group, group cage, multi-cage, olfactometer, odor, olfactory, sensory, behavioral biology, phenotype | nlx_158513 | SCR_004072 | PhenoSys GmbH | 2026-02-07 02:06:37 | 37 | |||||||||
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Bpod Resource Report Resource Website 10+ mentions |
Bpod (RRID:SCR_015943) | software resource | Software for a measurement and control system for behavior research, most often used to implement operant (Go/NoGo, 2AFC) tasks. This software controls a hierarchy of hardware modules, each powered by an Arduino-programmable microcontroller. | sanworks, rodent, behavior, experiment, control, software, hardware, arduino, measurement | is listed by: OpenBehavior | Open source, Free, Available for download | https://github.com/sanworks/Bpod | SCR_015943 | 2026-02-07 02:09:21 | 34 | |||||||||
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MVZ Collections Resource Report Resource Website 1+ mentions |
MVZ Collections (RRID:SCR_010608) | MVZ Collections | biomaterial supply resource, material resource | A collection of over 640,000 specimens of amphibians, reptiles, birds, bird eggs or nests, and mammals, as well as over 50,000 tissue samples from these vertebrate groups. These research collections are ranked as one of the largest in the United States, and the largest of any university museum. In addition, the Museum has numerous special collections that include archived field notes and photographs, historical annotated maps and correspondence, avian sound recordings, chromosome and histology preparations, Milton Hildebrand anatomical and film collections, artwork related to terrestrial vertebrate natural history, and a library of books, reprints, and journals for curation and research activities. Specimen data are accessible online, and the Museum is working to improve data access to the other collections. Museum Collections * Mammal Collection * Herpetological Collection * Bird Collection * Egg & Nest Collection * Tissue Collection * Fieldnotes, Photos, & Map Collection * Other Collections The Museum of Vertebrate Zoology (MVZ) welcomes donations of amphibians, reptiles, birds, bird eggs and nests, mammals and related materials. Acceptance of a donation is at the discretion of MVZ Curators. * Specimens -- May include preserved specimens and/or parts (e.g., tissue samples) as well as unpreserved material (e.g., frozen carcasses, live animals) that will be prepared by Museum Curators, curatorial staff, or students. * Related Materials -- Donations of images (digital or printed photographs or slides), sound recordings, field notes, and other natural history archival material. Materials must be connected to specimens or research projects. Donated material and associated data will be made available for research, education, or public exhibit according to the mission and policies of the Museum and Regents, except by prior signed agreement between the donor and the Museum. | tissue, dna, egg, nest, tissue, blood, protein extract, skin, skeleton |
is listed by: One Mind Biospecimen Bank Listing has parent organization: Museum of Vertebrate Zoology |
Will provide limited grants of tissue from its collections to qualified researchers | nlx_51505 | SCR_010608 | Museum of Vertebrate Zoology Collections | 2026-02-07 02:14:39 | 1 | |||||||
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Rodent Brain Extraction Tool Resource Report Resource Website |
Rodent Brain Extraction Tool (RRID:SCR_002538) | rBET | image processing software, software resource, software application, data processing software | A modified version of the Brain Extraction Tool (BET) that can process rodent brains. | magnetic resonance |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: FSL has parent organization: King's College London; London; United Kingdom |
Free, Available for download, Freely available | nlx_155945 | http://www.nitrc.org/projects/rbet | SCR_002538 | 2026-02-10 09:54:44 | 0 | |||||||
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AnimalTFDB Resource Report Resource Website 100+ mentions |
AnimalTFDB (RRID:SCR_001624) | AnimalTFDB | data or information resource, database | A comprehensive transcription factor (TF) database in which they identified and classified all the genome-wide TFs in 50 sequenced animal genomes (Ensembl release version 60). In addition to TFs, it also collects transcription co-factors and chromatin remodeling factors of those genomes, which play regulatory roles in transcription. Here they defined the TFs as proteins containing a sequence-specific DNA-binding domain (DBD) and regulating target gene expression. Currently, the AnimalTFDB classifies all the animal TFs into 72 families according to their conserved DBDs. Gene lists of transcription factors, transcription co-factors and chromatin remodeling factors of each species are available for downloading., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | transcription factor, dna-binding domain, transcription co-factor, chromatin remodeling factor, gene structure, functional domain, go annotation, protein interaction, ortholog, paralog, 3d structure, pathway, protein-protein interaction, binding site, target, data set, image collection, 3d spatial image, bio.tools, FASEB list |
is listed by: OMICtools is listed by: bio.tools is listed by: Debian is related to: Gene Ontology is related to: Ensembl has parent organization: Huazhong University of Science and Technology; Wuhan; China |
Huazhong University of Science and Technology; Wuhan; China ; Fundamental Research Funds for the Central Universities 2010MS045; National Natural Science Foundation of China 31171271 |
PMID:22080564 | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_153892, OMICS_01856, biotools:animal_tfdb | https://bio.tools/animal_tfdb | SCR_001624 | Animal Transcription Factor Database | 2026-02-11 10:56:16 | 289 | ||||
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University of Texas at San Antonio Laboratory of Professor Brenda Claiborne Resource Report Resource Website 1+ mentions |
University of Texas at San Antonio Laboratory of Professor Brenda Claiborne (RRID:SCR_008064) | UTSA Claiborne Lab | portal, data or information resource, data set, organization portal, laboratory portal | The long-term goals of my research are to understand the relationship between neuronal structure and function, and to elucidate the factors that affect neuronal morphology and function over the lifespan of the mammal. Currently we are examining 1) the effects of synaptic activity on neuronal development; 2) the effects of estrogen on neuronal morphology and on learning and memory; and, 3) the effects of aging on neuronal structure and function. We have focused our efforts on single neurons in the hippocampal formation, a region that is critical for certain forms of learning and memory in rodents and humans. From the portal, you may click on a cell in your region of interest to see the complete database of cells from that region. You may also explore the Neuron Database: * Comparative Electrotonic Analysis of Three Classes of Rat Hippocampal Neurons. (Raw data available) * Quantitative, three-dimensional analysis of granule cell dendrites in the rat dentate gyrus. * Dendritic Growth and Regression in Rat Dentate Granule Cells During Late Postnatal Development.(Raw data available) * A light and electron microscopic analysis of the mossy fibers of the rat dentate gyrus. | neuronal, structure, synaptic activity, rodent, human, neuron, neuronal morphology, synapse, neuronal development, learning, memory, estrogen, hippocampus, hippocampal formation, mammal, cell | has parent organization: University of Texas at San Antonio; Texas; USA | Aging | nif-0000-10481 | SCR_008064 | USTA Laboratory of Professor Brenda Claiborne | 2026-02-11 10:57:44 | 1 | |||||||
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JIP Analysis Toolkit Resource Report Resource Website 10+ mentions |
JIP Analysis Toolkit (RRID:SCR_009588) | JIP Toolkit | software application, image analysis software, software resource, software toolkit, data processing software | Software toolkit for analysis of rodent and non-human primate fMRI data. The toolkit consists of binary executables, highly portable open-source c code, and image resources that enable 1) Automated registration based upon mutual information (affine, non-linear warps), with flexible control and visualization of each step; 2) visualization of 4-dimensional data using either mosaic or tri-planar display of the z/slice dimension, and integration of a general linear model for graphical display of time series analysis; 3) A simple and flexible 1st-order GLM for fMRI time series analysis, a 1st-order GLM analysis for PET data within the SRTM framework, plus a 2nd-order GLM analysis following the Worsley 2002 scheme, and 4) MRI templates to place your rodent and non-human primate data into standardized spaces. | affine warp, atlas application, atlas data, c, console (text based), image display, image-to-image, linux, macos, magnetic resonance, nifti, nonlinear warp, pet, spect, posix/unix-like, registration, resampling, spatial transformation, time domain analysis, visualization, warping, fmri |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: Massachusetts Institute of Technology; Massachusetts; USA; has parent organization: Harvard Medical School; Massachusetts; USA |
NIBIB R03EB008134 | MGH CSRL License | nlx_155778 | http://www.nitrc.org/projects/jip | SCR_009588 | JIP fMRI Analysis Toolkit | 2026-02-11 10:57:58 | 21 | |||||
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Med Associates Video Freeze Software Resource Report Resource Website 50+ mentions |
Med Associates Video Freeze Software (RRID:SCR_014574) | data acquisition software, software application, software resource, data processing software | Automation software used to analyze fear behavior in rodents. Freezing is represented in the data file in several different ways, including the total time the subject spends motionless during the session, the percent of time motionless, the number of freezing episodes or occurrences, or as an average index of motion. | rodent, freeze, fear, data acquisition, data acquisition software | Commercial | SCR_014574 | 2026-02-11 10:58:58 | 68 | |||||||||||
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LONI Image and Data Archive Resource Report Resource Website 50+ mentions |
LONI Image and Data Archive (RRID:SCR_007283) | IDA, LONI IDA, | image collection, data or information resource, database | Archive used for archiving, searching, sharing, tracking and disseminating neuroimaging and related clinical data. IDA is utilized for dozens of neuroimaging research projects across North America and Europe and accommodates MRI, PET, MRA, DTI and other imaging modalities. | data storage, mri, pet, mra, dti, neuroimaging, image storage, histology, fmri, spect, normal, control, alzheimer's disease, mild cognitive impairment, data sharing, clinical, protection, brain, cryosection, FASEB list |
is recommended by: National Library of Medicine is listed by: NIH Data Sharing Repositories |
Control, Autism, Parkinson's disease, Alzheimer's disease, Mild Cognitive Impairment, Normal control, Aging | NIBIB | Restricted | nif-0000-00040, r3d100012840 | https://ida.loni.usc.edu/login.jsp?search=true https://doi.org/10.17616/R39N6D |
https://ida.loni.ucla.edu/login.jsp | SCR_007283 | , IDA, LONI Database, LONI, Image Data Archive | 2026-02-11 10:57:31 | 87 | |||
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Feeding Experimentation Device project Resource Report Resource Website 1+ mentions |
Feeding Experimentation Device project (RRID:SCR_015942) | FED | portal, topical portal, data or information resource | Flexible open-source device for measuring feeding behavior. FED measures food intake in mice. It is battery powered and designed to be used in rodent colony caging.Home cage-compatible feeding system that measures food intake with high accuracy and temporal resolution. FED offers alternative to commercial feeders, with convenience of use in tradition colony rack caging. | Feeding, food intake, optogenetic, behavioral data analysis, data analysis software, behavior apparatus, behavior rig, reward delivery, behavior measurement, homecage, Instrument, OpenBehavior |
is listed by: OpenBehavior has parent organization: Washington University in St. Louis; Missouri; USA |
NIH | PMID:27060385 | Commercially available | https://github.com/KravitzLab/FED1 https://edspace.american.edu/openbehavior/project/feeding-experimentation-device/ https://hackaday.io/project/72964-feeding-experimentation-device-fed-20 |
SCR_015942 | , FED1, FED2, Feeding Experimentation Device system, Feeding Experimentation Device | 2026-02-11 10:59:26 | 1 | |||||
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Computerized Anatomical Reconstruction and Editing Toolkit Resource Report Resource Website 50+ mentions |
Computerized Anatomical Reconstruction and Editing Toolkit (RRID:SCR_006260) | CARET | software application, data visualization software, software resource, data processing software, image processing software | Software package to visualize and analyze structural and functional characteristics of cerebral and cerebellar cortex in humans, nonhuman primates, and rodents. Runs on Apple (Mac OSX), Linux, and Microsoft Windows operating systems. | reconstruction, visualization, cerebral cortex, surface, brain, dataset, cerebellar cortex, atlas application, mesh generation, quantitative shape analysis, segmentation, shape analysis, intersubject, image-to-template, gaussian curvature, mean curvature, animation, three dimensional display, two dimensional display, surface rendering, cortical flat map, FASEB list |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is listed by: Debian is related to: SumsDB has parent organization: Washington University School of Medicine in St. Louis; Missouri; USA |
NIMH R01 MH60974; NEI EY02091 |
PMID:11522765 | Free, Available for download, Freely available | nif-0000-00279 | http://www.nitrc.org/projects/caret https://sources.debian.org/src/caret/ |
SCR_006260 | Computerized Anatomical Reconstruction Editing Toolkit | 2026-02-11 10:57:18 | 57 | ||||
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URMC Gene Targeting and Transgenic Core Resource Report Resource Website |
URMC Gene Targeting and Transgenic Core (RRID:SCR_012367) | URMC Gene Targeting and Transgenic Core | core facility, access service resource, service resource | Currently, the Gene Targeting and Transgenic Core''s services include the production of mouse models using DNA microinjection and embryonic stem cell injection (from gene targeting in mouse ES cells to production of chimeric mice) methodologies. Additional services have included: various analytical techniques, embryo cryopreservation, rederivation of pathogen-free rodents, and assisted reproduction techniques (e.g., in vitro fertilization (IVF), superovulation, and embryo transfer). Specific strains, and alternative species and methods are considered when appropriate for individual research applications. | is listed by: ScienceExchange | SciEx_12082 | SCR_012367 | University of Rochester Medical Center Gene Targeting and Transgenic Core | 2026-02-11 10:58:32 | 0 | |||||||||
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Joslin Diabetes Center Islet Isolation Core Resource Report Resource Website |
Joslin Diabetes Center Islet Isolation Core (RRID:SCR_012299) | JDC Islet Isolation Core | core facility, training service resource, access service resource, service resource | Core facility that provides the following services: Rodent and Porcine Islet Isolation Services, Training Services. The main objective of the Islet Isolation Core is to provide Islets of Langerhans to investigators in the Boston area and beyond. By receiving islets from the Core one is assured of consistent high quality and purity of islets for experiments. The Core can isolate rodent and neonatal porcine islets. This leaves the investigator to concentrate on experiments rather than the complexity of islet isolation. The Core can buy the animals or the investigator can provide their own, such as special transgenic mice. Over the last five years the Core has isolated more than 10 million islets. They also provide training and advice. The Core can provide training not only for the isolation procedure but islet viability, islet size measurement, GSIS (Glucose Stimulated Insulin Secretion), STZ-induced diabetes, transplantation under the kidney capsule, and islet graft retrieval. | cell viability assay, cell separation |
is listed by: ScienceExchange is listed by: Eagle I has parent organization: Joslin Diabetes Center has parent organization: Harvard University Labs and Facilities |
SciEx_11620 | SCR_012299 | Harvard University Islet Isolation Core, Harvard JDC Islet Isolation Core, Harvard University Islet Isolation Core (JDC), Harvard University Joslin Diabetes Center Islet Isolation Core | 2026-02-11 10:58:35 | 0 | ||||||||
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University of Mississippi Medical Center Animal Behavior Core Facility Resource Report Resource Website |
University of Mississippi Medical Center Animal Behavior Core Facility (RRID:SCR_012494) | core facility, access service resource, service resource | Provides tools and assistance to identify and monitor behavior in rodents. Supports basic and translational research by providing assistance with project development, technical assistance to identify and monitor behavior in rats and mice, training in techniques for analysis of animal behaviors, assisting with interpretation and presentation of data and results relating to animal behaviors. | identify and monitor behavior in rodents, rats and mice behavior, monitor behavior, |
is listed by: ScienceExchange is listed by: ABRF CoreMarketplace is related to: UMMC Center for Psychiatric Neuroscience Labs and Facilities has parent organization: University of Mississippi Medical Center; Mississippi; USA |
Open | SciEx_266, ABRF_2753 | https://coremarketplace.org/?FacilityID=2753&citation=1 | http://www.scienceexchange.com/facilities/rodent-behavior-core-umc | SCR_012494 | UMMC CPN Rodent Behavior Core, University of Mississippi Medical Center Rodent Behavior Core, UMMC Rodent Behavior Core, University of Mississippi Medical Center Center for Psychiatric Neuroscience Rodent Behavior Core, University of Mississippi Medical Center Animal Behavior Core, UMMC Center for Psychiatric Neuroscience Rodent Behavior Core | 2026-02-11 10:58:35 | 0 | ||||||
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Emory University Rodent Behavioral Core Resource Report Resource Website 1+ mentions |
Emory University Rodent Behavioral Core (RRID:SCR_012499) | RBC | core facility, access service resource, service resource | One of the Emory Integrated Core Facilities (EICF), is supported by Emory University School of Medicine and the Georgia Clinical and Translational Science Alliance. We plan, execute, and analyze behavioral experiments examining activity, arousal, coordinated movement, learning and memory, anxiety, depression, seizure susceptibility, reward/reinforcement, and aggression in mice and rats. | analyze behavioral experiments, mice, rats, activity, arousal, coordinated movement, learning and memory, anxiety, depression, seizure susceptibility, USEDit, ABRF |
is listed by: ScienceExchange is listed by: ABRF CoreMarketplace is related to: USEDit has parent organization: Emory University School of Medicine; Atlanta; Georgia; USA |
SciEx_284, ABRF_1754 | https://coremarketplace.org/?FacilityID=1754&citation=1 | http://www.scienceexchange.com/facilities/rodent-behavioral-core-emory | SCR_012499 | Emory University School of Medicine Rodent Behavioral Core, Emory Rodent Behavioral Core | 2026-02-11 10:58:38 | 2 | ||||||
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Indiana University School of Medicine Center for Diabetes and Metabolic Diseases Islet and Physiology Core Facility Resource Report Resource Website |
Indiana University School of Medicine Center for Diabetes and Metabolic Diseases Islet and Physiology Core Facility (RRID:SCR_015081) | core facility, access service resource, service resource | Services include islet isolation services from mice and rats and access to porcine and human islets. The core is equipped with BioRep Perifusion Apparatus for measurement of insulin secretion and offers services for islet and beta cell calcium imaging. Provides services for islet transplantation and assists investigators who wish to perform immunohistochemistry, immunofluorescence and/or analysis of endocrine or beta cell mass on whole pancreata from mouse and rat models.Offers services for rodent metabolic characterization, including performance of insulin and glucose tolerance testing, analysis of body composition, and metabolic cage analysis using the TSE System cages. Recently added services include zebrafish characterization to screen genes and small molecules for their effects on islet development and function. | islets, physiology, diabetes research, islet transplantation services, beta cell mass analysis, whole pancreata, mouse, rat |
is listed by: NIDDK Information Network (dkNET) is listed by: ABRF CoreMarketplace has parent organization: Indiana Diabetes Research Center is organization facet of: Indiana Diabetes Research Center |
Diabetes | NIDDK P30DK097512; IUPUI Signature Center Initiative |
Open | ABRF_2889 | https://iu.ilab.agilent.com/service_center/show_external/5519/islet_physiology_core | http://cdmd.indiana.edu/research-core/the-islet-core/, https://coremarketplace.org/?FacilityID=2889&citation=1 | SCR_015081 | , Islet and Physiology Core, Indiana Diabetes Research Center Islet and Physiology Core, Indiana Diabetes Research Center Islet and Physiology Core Facility, Indiana University School of Medicine Center for Diabetes and Metabolic Diseases Islet and Physiology Core | 2026-02-11 10:59:06 | 0 | ||||
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Indiana University Cooperative Center of Excellence in Hematology Optical Microscopy Core Resource Report Resource Website |
Indiana University Cooperative Center of Excellence in Hematology Optical Microscopy Core (RRID:SCR_015347) | core facility, resource, access service resource, service resource | Core facility which provides access to and training on optical microscopy instruments to Indiana University researchers. | optical microscopy training, optical microscopy access |
is listed by: NIDDK Information Network (dkNET) has parent organization: Indiana University School of Medicine; Indiana; USA has parent organization: Indiana University Cooperative Center of Excellence in Hematology is organization facet of: Indiana University Cooperative Center of Excellence in Hematology |
NIDDK U54DK106846 | Available to the research community | SCR_015347 | 2026-02-11 10:59:20 | 0 | |||||||||
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Indiana O'Brien Center for Advanced Microscopic Analysis Probe Delivery Core Resource Report Resource Website |
Indiana O'Brien Center for Advanced Microscopic Analysis Probe Delivery Core (RRID:SCR_015274) | core facility, resource, access service resource, service resource | Core facility which develops and characterizes methods for expressing fluorescent biosensors in the rodent kidney to be paried with intravital microscopy. | fluorescent probe, fluorescent biosensor, intravital microscopy probe, rat kidney probe |
is listed by: NIDDK Information Network (dkNET) has parent organization: Indiana University School of Medicine; Indiana; USA has parent organization: Indiana O'Brien Center for Advanced Microscopic Analysis is organization facet of: Indiana O'Brien Center for Advanced Microscopic Analysis |
NIDDK P30DK079312 | Available to the research community | SCR_015274 | 2026-02-11 10:59:08 | 0 | |||||||||
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Joslin Diabetes Center Animal Physiology Core Facility Resource Report Resource Website 500+ mentions |
Joslin Diabetes Center Animal Physiology Core Facility (RRID:SCR_009876) | core facility, resource, access service resource, service resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on October 27,2023. Core that provides technically advanced physiological evaluation of metabolism in diabetes, obesity, and their associated complications in rodents for DRC investigators and outside users. It also provides training of investigators and trainees in several physiological procedures. | physiological evaluation, diabetes metabolism, obesity metabolism, rodent research, diabetes rodent research, physiological procedure training |
is listed by: Eagle I is listed by: NIDDK Information Network (dkNET) has parent organization: Joslin Diabetes Center is organization facet of: Joslin Diabetes Center |
Diabetes | NIDDK P30DK036836 | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_156346 | SCR_009876 | 2026-02-11 10:58:02 | 590 | |||||||
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University of Washington Nutrition and Obesity Research Center Energy Balance Core Resource Report Resource Website |
University of Washington Nutrition and Obesity Research Center Energy Balance Core (RRID:SCR_015469) | core facility, resource, access service resource, service resource | Core that provides affiliated investigators with a resource for measuring energy balance and body composition in rodent models, and for applying neuroscience techniques to nutrition and obesity-related research. | nutrition, obesity, neuroscience, body composition, energy balance, mouse model, rodent |
is listed by: NIDDK Information Network (dkNET) has parent organization: University of Washington; Seattle; USA has parent organization: University of Washington Nutrition and Obesity Research Center is organization facet of: University of Washington Nutrition and Obesity Research Center |
Obesity | NIDDK P30DK035816 | Available to the research community | SCR_015469 | 2026-02-11 10:59:13 | 0 |
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