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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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NIF Dysfunction Ontlogy Resource Report Resource Website |
NIF Dysfunction Ontlogy (RRID:SCR_010365) | NIFDYS | data or information resource, ontology, controlled vocabulary | Ontology that contains the former BIRNLex-Disease, version 1.3.2. -- The BIRN Project lexicon provided entities for data and database annotation for the BIRN project, covering anatomy, disease, data collection, project management and experimental design. It was built using the organizational framework provided by the foundational Basic Formal Ontology (BFO). It used an abstract biomedical layer on top of that - OBO-UBO which was constructed as a proposal to the OBO Foundry. This was meant to support creating a sharable view of core biomedical objects such as biomaterial_entity, and organismal_entity that all biomedical ontologies are likely to need and want to use with the same intended meaning. The BIRNLex biomaterial entities have already been factored to separately maintained ontology - BIRNLexBiomaterialEntity.owl which this BIRNLex-Main.owl file imports. The Ontology of Biomedical Investigation (OBI) is also imported and forms the foundation for the formal description of all experiment-related artifacts. The BIRNLex will serve as the basis for construction of a formal ontology for the multiscale investigation of neurological disease. | owl |
is listed by: BioPortal has parent organization: Neuroscience Information Framework |
nlx_157493 | SCR_010365 | Neuroscience Information Framework (NIF) Dysfunction Ontlogy, Neuroscience Information Framework Dysfunction Ontlogy | 2026-02-17 10:01:43 | 0 | ||||||||
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Upper-Level Cancer Ontology Resource Report Resource Website |
Upper-Level Cancer Ontology (RRID:SCR_010443) | CANONT | data or information resource, ontology, controlled vocabulary | Upper-level ontology for cancer. | obo | is listed by: BioPortal | Cancer | nlx_157620 | SCR_010443 | 2026-02-17 10:01:29 | 0 | ||||||||
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Web-Service Interaction Ontology Resource Report Resource Website |
Web-Service Interaction Ontology (RRID:SCR_010448) | WSIO | data or information resource, ontology, controlled vocabulary | Ontology that enables automated interaction with more complex Web services that are typical for example within life sciences. WSIO is however independent of the application domain and relevant for both SOAP and REST Web services, and for batch execution engines in general. If the interaction scenario with a Web service is nontrivial (and incorporates session handling), annotation with WSIO concepts will enable automatic generation of client programs, scripts, or interactive applications with a graphical user interface. WSIO also enables automation of different ways of data transfer and data un-/compression or en-/decoding. They strongly discourage providers from developing complex interaction and data-transfer/compression scenarios, however when needed, WSIO may enable smooth automated interaction with them. Future versions will support more interaction scenarios. WSIO aims to serve also as a means to standardise the complex interaction scenarios primarily within both SOAP and REST Web services, and secondarily to apply also to batch execution infrastructure in general. | obo | is listed by: BioPortal | nlx_157629 | SCR_010448 | 2026-02-17 10:01:48 | 0 | |||||||||
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Wheat Trait Ontology Resource Report Resource Website |
Wheat Trait Ontology (RRID:SCR_010449) | CO-WHEAT | data or information resource, ontology, controlled vocabulary | Ontology that defines traits of the International Wheat Information System (IWIS) database and wheat descriptor. | obo | is listed by: BioPortal | nlx_157630 | SCR_010449 | 2026-02-17 10:01:45 | 0 | |||||||||
|
XEML Environment Ontology Resource Report Resource Website |
XEML Environment Ontology (RRID:SCR_010450) | XEO | data or information resource, ontology, controlled vocabulary | Ontology to help plant scientists in documenting and sharing metadata describing the abiotic environment. | obo | is listed by: BioPortal | nlx_157631 | SCR_010450 | 2026-02-17 10:01:53 | 0 | |||||||||
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Situation-Based Access Control Ontology Resource Report Resource Website |
Situation-Based Access Control Ontology (RRID:SCR_010429) | SITBAC | data or information resource, ontology, controlled vocabulary | Ontology of context-based healthcare access-control policies. | owl | is listed by: BioPortal | nlx_157588 | SCR_010429 | 2026-02-17 10:01:45 | 0 | |||||||||
|
Santa Barbara Coastal Observation Ontology Resource Report Resource Website |
Santa Barbara Coastal Observation Ontology (RRID:SCR_010424) | OBOE-SBC | data or information resource, ontology, controlled vocabulary | Extensible Observation Ontology for the Santa Barbara Coastal Long Term Ecological Research project (SBC-LTER). It extends core concepts defined in the OBOE suite that are particular to the Santa Barbara Coastal Long Term Ecological Research project''s data collection activities. These include specific measurement protocols, sites, etc. This is meant as a case study ontology for the Semtools project. | owl | is listed by: BioPortal | nlx_157582 | SCR_010424 | 2026-02-17 10:01:47 | 0 | |||||||||
|
Semantic Types Ontology Resource Report Resource Website |
Semantic Types Ontology (RRID:SCR_010425) | STY | data or information resource, ontology, controlled vocabulary | Ontology of semantic types. | umls | is listed by: BioPortal | nlx_157584 | SCR_010425 | 2026-02-17 10:01:45 | 0 | |||||||||
|
UBERON Resource Report Resource Website 50+ mentions |
UBERON (RRID:SCR_010668) | UBERON | data or information resource, ontology, controlled vocabulary | An integrated cross-species anatomy ontology representing a variety of entities classified according to traditional anatomical criteria such as structure, function and developmental lineage. The ontology includes comprehensive relationships to taxon-specific anatomical ontologies, allowing integration of functional, phenotype and expression data. Uberon consists of over 10000 classes (March 2014) representing structures that are shared across a variety of metazoans. The majority of these classes are chordate specific, and there is large bias towards model organisms and human. | anatomy, comparative, evolution, organ system, anatomical structure, body part, organ, tissue, body, vertebrate, function, phenotype, expression, model organism, obo |
is used by: Neuroscience Information Framework is listed by: BioPortal is related to: Gene Ontology has parent organization: OBO |
ARRA ; NSF ; NHGRI 5R01HG004838; NHGRI P41HG002273; DOE DE-AC02-05CH11231; NCRR 1U24RR029825-01; NHGRI P41HG002273-09S1 |
PMID:22293552 | nlx_74404 | SCR_010668 | Uber anatomy ontology, Uber-anatomy ontology | 2026-02-17 10:01:33 | 59 | ||||||
|
Semanticscience Integrated Ontology Resource Report Resource Website 1+ mentions |
Semanticscience Integrated Ontology (RRID:SCR_010427) | SIO | data or information resource, ontology, controlled vocabulary | Ontology that provides a simple, integrated upper level ontology (types, relations) for consistent knowledge representation across physical, processual and informational entities. It provides vocabulary for the Bio2RDF (http://bio2rdf.org) and SADI (http://sadiframework.org) projects. | owl |
is used by: DisGeNET is listed by: BioPortal |
nlx_157586 | SCR_010427 | 2026-02-17 10:01:29 | 1 | |||||||||
|
Ontology of Glucose Metabolism Disorder Resource Report Resource Website |
Ontology of Glucose Metabolism Disorder (RRID:SCR_010399) | OGMD | data or information resource, ontology, controlled vocabulary | Ontology including the disease names, phenotypes and their classifications involved in Glucose Metabolism Disorder, Diabetes. (OBO and OWL format are available in sourceforge.) | obo, owl | is listed by: BioPortal | Glucose Metabolism Disorder | nlx_157531 | SCR_010399 | 2026-02-17 10:01:28 | 0 | ||||||||
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Tick Gross Anatomy Ontology Resource Report Resource Website |
Tick Gross Anatomy Ontology (RRID:SCR_010433) | TADS | data or information resource, ontology, controlled vocabulary | Anatomy Ontology of the Tick, Families: Ixodidae, Argassidae | obo | is listed by: BioPortal | nlx_157609 | SCR_010433 | 2026-02-17 10:01:45 | 0 | |||||||||
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Traditional Medicine Constitution Value Set Resource Report Resource Website |
Traditional Medicine Constitution Value Set (RRID:SCR_010435) | TM-CONST | data or information resource, ontology, controlled vocabulary | Ontology of the value set for the constitution property of the International Classification of Traditional Medicine (ICTM). | owl | is listed by: BioPortal | nlx_157612 | SCR_010435 | 2026-02-17 10:01:29 | 0 | |||||||||
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Traditional Medicine Signs and Symptoms Value Set Resource Report Resource Website |
Traditional Medicine Signs and Symptoms Value Set (RRID:SCR_010438) | TM-SIGNS-AND-SYMPTS | data or information resource, ontology, controlled vocabulary | Ontology of the value set for the Signs and Symptoms property of the International Classification of Traditional Medicine (ICTM). | owl | is listed by: BioPortal | nlx_157615 | SCR_010438 | 2026-02-17 10:01:52 | 0 | |||||||||
|
Units Ontology Resource Report Resource Website |
Units Ontology (RRID:SCR_010441) | UNITSONT | data or information resource, ontology, controlled vocabulary | A small ontology for the units of measurement developed during the development of the Sleep Domain Ontology (SDO). It supports the use of SDO within the PhysioMIMI application. | owl | is listed by: BioPortal | nlx_157618 | SCR_010441 | 2026-02-17 10:01:45 | 0 | |||||||||
|
Units of Measurement Ontology Resource Report Resource Website 1+ mentions |
Units of Measurement Ontology (RRID:SCR_010442) | UO | data or information resource, ontology, controlled vocabulary | Metrical units ontology for use in conjunction with PATO | obo | is listed by: BioPortal | nlx_157619 | SCR_010442 | 2026-02-17 10:01:52 | 1 | |||||||||
|
Ontology of Homology and Related Concepts in Biology Resource Report Resource Website 1+ mentions |
Ontology of Homology and Related Concepts in Biology (RRID:SCR_010400) | HOM | data or information resource, ontology, controlled vocabulary | Ontology that represents concepts related to homology, as well as other concepts used to describe similarity and non-homology. | obo | is listed by: BioPortal | nlx_157532 | SCR_010400 | 2026-02-17 10:01:47 | 1 | |||||||||
|
Ontology of Language Disorder in Autism Resource Report Resource Website |
Ontology of Language Disorder in Autism (RRID:SCR_010401) | LDA | data or information resource, ontology, controlled vocabulary | Ontology of language terms used in the domain of autism available for consultation and sharing. The language terms were obtained via text mining and automatic retrieval of terms from the corpus of PubMed abstracts. | owl | is listed by: BioPortal | Autism, Language disorder | nlx_157533 | SCR_010401 | Ontology of Language Disorder in Autism | 2026-02-17 10:01:44 | 0 | |||||||
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Pathogenic Disease Ontology Resource Report Resource Website |
Pathogenic Disease Ontology (RRID:SCR_010405) | PDO | data or information resource, ontology, controlled vocabulary | An ontology for describing both human infectious disease caused by bacteria and the disease that is related to bacterial infection. | owl | is listed by: BioPortal | Infectious disease, (caused by bacteria), Bacterial infection related disease | nlx_157543 | SCR_010405 | 2026-02-17 10:01:44 | 0 | ||||||||
|
Protein Modification Ontology Resource Report Resource Website |
Protein Modification Ontology (RRID:SCR_010412) | PSIMOD | data or information resource, ontology, controlled vocabulary | Ontology consisting of terms that describe protein chemical modifications, logically linked by an is_a relationship in such a way as to form a direct acyclic graph (DAG). The PSI-MOD ontology has more than 45 top-level nodes, and provides alternative hierarchical paths for classifying protein modifications either by the molecular structure of the modification, or by the amino acid residue that is modified. | obo | is listed by: BioPortal | nlx_157560 | SCR_010412 | PSI-MOD | 2026-02-17 10:01:47 | 0 |
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