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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Institute for Magnetic Resonance Safety, Education and Research Resource Report Resource Website 1+ mentions |
Institute for Magnetic Resonance Safety, Education and Research (RRID:SCR_000039) | institution | The Institute for Magnetic Resonance Safety, Education, and Research (IMRSER) was formed in response to the growing need for information and research on matters pertaining to magnetic resonance (MR) safety. The IMRSER is the first independent, multidisciplinary, professional organization devoted to promoting awareness, understanding, and communication of MR safety issues through education and research. Mission Statement To promote awareness and understanding of MR safety, To disseminate information regarding current and emerging MR safety issues, To develop and provide materials and resources to facilitate MR safety-related education and training, To respond to critical MR safety issues with a sense of urgency, and To advance the field of MR safety through support of scientific research. Functions and activities of the IMRSER include development of up-to-date MR safety materials and dissemination of this information to the MR community. This is accomplished predominantly through the efforts of the Advisory Boards. Members of the Advisory Boards of the Institute for Magnetic Resonance Safety, Education, and Research (IMRSER) are charged with creating recommendations, guidelines, position papers, and educational materials pertaining to existing or emerging MR safety issues. This is achieved by utilizing the pertinent peer-reviewed literature and by relying on each members extensive clinical, research, or other appropriate experience. Notably, documents developed by the IMRSER incorporate MR safety guidelines and recommendations created by the International Society for Magnetic Resonance in Medicine (ISMRM), the American College of Radiology (ACR), the Food and Drug Administration (FDA), the National Electrical Manufacturers Association (NEMA), the Medical Devices Agency (MDA), the International Electrotechnical Commission (IEC), and other similar organizations. The IMRSERs rigorous development and review process for MR safety documents ensures that authoritative and relevant information is produced in a timely manner for rapid dissemination to the MR community. The MR safety information is provided to MR healthcare professionals and others as hard copy and electronic publications. Additionally, this information is posted on the IMRSER web site as well as on www.MRIsafety.com (currently with over 92,000 registered users). The Institute for Magnetic Resonance Safety, Education, and Research permits all members of the MR community to use the MRI Safety Guidelines posted on this web site. Please be sure to read and understand our disclaimer. | guidelines, human, magnetic resonance, mri, safety | nif-0000-10678 | SCR_000039 | IMRSER | 2026-02-07 02:05:16 | 1 | ||||||||||
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GeneTex Resource Report Resource Website 500+ mentions |
GeneTex (RRID:SCR_000069) | commercial organization | An antibody supplier for the purposes of life science and biomedical research. This company has a wide variety of immunological reagents that focus on areas of research such as cancer, cell biology, epigenetics, immunology and infectious diseases. | antibody, antibodies, supplier, immunology, research, cell biology, cancer, epigenetics, infectious diseases, reagents | nlx_152372 | SCR_000069 | 2026-02-07 02:05:16 | 690 | |||||||||||
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nFuse Resource Report Resource Website 1+ mentions |
nFuse (RRID:SCR_000066) | nFuse | software resource | Software that predicts fusion transcripts and associated CGRs from matched RNA-seq and Whole Genome Shotgun Sequencing (WGSS). | cancer, genomics |
is listed by: OMICtools is listed by: Google Code has parent organization: Simon Fraser University; British Columbia; Canada |
Cancer | PMID:22745232 | Free, Available for download, Freely available, | OMICS_01353 | SCR_000066 | nFuse: Discovery of Complex Genomic Rearrangements in Cancer | 2026-02-07 02:05:16 | 2 | |||||
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FACS Resource Report Resource Website 1+ mentions |
FACS (RRID:SCR_000055) | FACS | software resource | Software for classification of Sequences using Bloom filters that can accurately and rapidly align sequences to a reference sequence. | unix/linux, sequence, bio.tools |
is listed by: OMICtools is listed by: GitHub is listed by: bio.tools is listed by: Debian is listed by: SoftCite has parent organization: SciLifeLab |
PMID:20472541 | Free, Available for download, Freely available | OMICS_02147, biotools:facs | https://bio.tools/facs | SCR_000055 | Fast and Accurate Classification of Sequences | 2026-02-07 02:05:17 | 5 | |||||
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Molegro Virtual Docker Resource Report Resource Website 1+ mentions |
Molegro Virtual Docker (RRID:SCR_000190) | Molegro Virtual Docker | software resource | An integrated platform for predicting protein-ligand interactions, the visualization of new ideas and analyzing protein targets. | protein ligand, protein target, visualization, integrated platform | is listed by: OMICtools | Free, Available for download, Freely available | OMICS_01603 | SCR_000190 | 2026-02-07 02:05:18 | 9 | ||||||||
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Zhejiang University; Zhejiang; China Resource Report Resource Website 1+ mentions |
Zhejiang University; Zhejiang; China (RRID:SCR_000224) | ZJU | university | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 31,2025. A public research university with twelve main academic disciplines that include science, engineering, agriculture and medicine. The university has campuses across China in locations such as Yuquan, Zhijiang and Zhoushan. It has studies available in undergraduate, graduate and post-doctorate degrees. | china, undergraduate, graduate, post doctorate, research university |
uses: ReadCube is parent organization of: DaTo is parent organization of: PlantNATsDB - Plant Natural Antisense Transcripts DataBase |
THIS RESOURCE IS NO LONGER IN SERVICE | grid.13402.34, Wikidata:Q197543, Crossref funder ID:501100004835, nlx_149178, ISNI:0000 0004 1759 700X | https://ror.org/00a2xv884 | SCR_000224 | Zhejiang University | 2026-02-07 02:05:20 | 1 | ||||||
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MRNet Resource Report Resource Website 1+ mentions |
MRNet (RRID:SCR_000225) | MRNet | software resource | A software-based network that provides efficient multicast and reduction communications for parallel and distributed tools and systems. Some key features of this resource include scalable data aggregation, multiple concurrent data channels and high-bandwidth communication. | is listed by: OMICtools | DOI:10.1145/1048935.1050172 | Free, Available for download, Freely available | OMICS_01686 | SCR_000225 | MRNet: A Multicast/Reduction Network | 2026-02-07 02:05:19 | 1 | |||||||
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FastQ Screen Resource Report Resource Website 10+ mentions |
FastQ Screen (RRID:SCR_000141) | FastQ Screen | software resource | Software that allows you to screen a library of sequences in FastQ format against a set of sequence databases so you can see if the composition of the library matches with what you expect. | perl, FASEB list |
is listed by: OMICtools has parent organization: Babraham Institute |
PMID:30254741 | Free, Available for download, Freely available | OMICS_01042 | SCR_000141 | 2026-02-07 02:05:19 | 47 | |||||||
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Trinity College Dublin; Dublin; Ireland Resource Report Resource Website 1+ mentions |
Trinity College Dublin; Dublin; Ireland (RRID:SCR_000261) | TCD | university | A public university, which is a part of the University of Dublin, and contains three main academic disciplines: Arts, Humanities and Social Sciences; Engineering, Mathematics and Sciences; and Health Sciences. The institution offers degrees at the undergraduate and graduate level. | arts, humanities, social sciences, mathematics, engineering, health sciences, Dublin, Ireland |
is related to: Pharma-Planta Consortium is related to: Biomedical Diagnostics Institute is parent organization of: ExplorEnz is parent organization of: CASBAH is parent organization of: Trinity Biobank is parent organization of: Random.org |
nlx_87233 | SCR_000261 | College of the Holy and Undivided Trinity of Queen Elizabeth near Dublin, Trinity, Trinity College Dublin, Trinity College, Trinity College Dublin - University of Dublin, University of Dublin | 2026-02-07 02:05:18 | 1 | ||||||||
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University of Florida; Florida; USA Resource Report Resource Website 1+ mentions |
University of Florida; Florida; USA (RRID:SCR_000145) | UF | university | Public research university in Gainesville, Florida, United States. Member of state university system of Florida with undergraduate and graduate programs in arts and sciences. | university, undergraduate, graduate, florida |
is listed by: Florida ExpertNet is affiliated with: Helmsley Cellular Research Hub is related to: Clinical and Translational Science Awards Consortium is related to: EnCor Biotechnology Inc. is related to: National High Magnetic Field Laboratory High B/T Core Facility is related to: National High Magnetic Field Laboratory Advanced Magnetic Resonance Imaging and Spectroscopy Core Facility is related to: National High Magnetic Field Laboratory Advanced Magnetic Resonance Imaging and Spectroscopy Core Facility is related to: Mnemiopsis Genome Project Portal is parent organization of: University of Florida College of Medicine; Florida; USA is parent organization of: ESPRIT is parent organization of: University of FLorida College of Medicine Molecular Pathology Core Facility is parent organization of: SNPper is parent organization of: ShapeComplexAtlas is parent organization of: University of Florida Labs and Facilities is parent organization of: MAPPER - Multi-genome Analysis of Positions and Patterns of Elements of Regulation is parent organization of: SobekCM is parent organization of: M-pick is parent organization of: ESPRIT-Tree is parent organization of: VIVO is parent organization of: MRM NeAt (Neurological Atlas) Mouse Brain Database is parent organization of: PASTA is parent organization of: Multi-fiber Reconstruction from DW-MRI is parent organization of: fanDTasia Java Applet: DT-MRI Processing is parent organization of: Mouse Brain Image Visualizer (MBIV) is parent organization of: Barth Syndrome Biorepository is parent organization of: Intrinsic Unscented Kalman Filter (IUKF) Tractography Software v1.0 is parent organization of: International Affective Picture System is parent organization of: FastqSifter is parent organization of: University of Florida Department of Chemistry Nuclear Magnetic Resonance Core Facility is parent organization of: University of Florida ICBR Cytometry Core Facility is parent organization of: University of Florida ICBR Bioinformatics Core Facility is parent organization of: University of Florida ICBR Electron Microscopy Core Facility is parent organization of: University of Florida ICBR Monoclonal Antibody Core Facility is parent organization of: University of Florida ICBR Gene Expression and Genotyping Core Facility is parent organization of: University of Florida ICBR NextGen DNA Sequencing Core Facility is parent organization of: University of Florida ICBR Proteomics and Mass Spectrometry Core Facility is parent organization of: Human Atlas of Neonatal Development and Early Life Immunity is parent organization of: Florida research open source synchronization tool is parent organization of: University of Florida UF Scripps Biomedical Research Bioinformatics and Statistics Core Facility is parent organization of: University of Florida Scripps Florida Histology Core Facility is parent organization of: University of Florida Health Mass Spectrometry and Proteomics Core Facility is parent organization of: University of Florida Scripps Institute for Biomedical Innovation and Technology Structural Biology Cryo Electron Microscopy Core Facility is parent organization of: University of Florida Systems Physiology and Omics Core Facility is parent organization of: University of FLorida College of Medicine Molecular Pathology Core Facility is parent organization of: University of Florida Herbert Wertheim College of Engineering Research Service Centers Core Facility is parent organization of: Herbert Wertheim University of Florida Scripps Institute for Biomedical Innovation and Technology Mouse Behavior Core Facility is parent organization of: Herbert Wertheim University of Florida Scripps Institute for Biomedical Innovation and Technology Genetic Perturbation Screening Core Facility is parent organization of: University of Florida Scripps Institute for Biomedical Innovation and Technology Flow Cytometry Core Facility is parent organization of: University of Florida Scripps Institute for Biomedical Innovation and Technology Metabolic Core Facility is parent organization of: Herbert Wertheim University of Florida Scripps Institute for Biomedical Innovation and Technology Genomics Core Facility is parent organization of: Herbert Wertheim University of Florida Scripps Institute for Biomedical Innovation and Technology Advanced Light Microscopy Core Facility hosts: National High Magnetic Field Laboratory |
ISNI:0000 0004 1936 8091, nlx_80063, Crossref funder ID:100007698, Wikidata:Q501758, grid.15276.37 | https://ror.org/02y3ad647 | SCR_000145 | University of Florida (UF), University of Florida, UFlorida | 2026-02-07 02:05:17 | 1 | |||||||
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MS-Spectre Resource Report Resource Website 1+ mentions |
MS-Spectre (RRID:SCR_000266) | software resource | Software that provides (Quantitiave) analysis of multiple ls-ms(ms) runs, using mzXML import of raw data coming from spectrometers. | standalone software, java |
is listed by: OMICtools has parent organization: SourceForge |
Free, Available for download, Freely available | OMICS_02496 | SCR_000266 | Mass Spectrometry Analysis Software | 2026-02-07 02:05:19 | 1 | ||||||||
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GEOquery Resource Report Resource Website 10+ mentions |
GEOquery (RRID:SCR_000146) | GEOquery | software resource | Software that establishes a bridge between GEO and BioConductor. | microarray, bio.tools |
is listed by: OMICtools is listed by: bio.tools is listed by: Debian is related to: Gene Expression Omnibus is related to: GEO2R has parent organization: Bioconductor has parent organization: National Institutes of Health |
PMID:17496320 | Free, Available for download, Freely available | biotools:geoquery, OMICS_01972 | https://bio.tools/geoquery https://sources.debian.org/src/r-bioc-geoquery/ |
SCR_000146 | GEOquery - Get data from NCBI Gene Expression Omnibus (GEO) | 2026-02-07 02:05:19 | 15 | |||||
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Polish Ministry of Science and Higher Education Resource Report Resource Website 1+ mentions |
Polish Ministry of Science and Higher Education (RRID:SCR_000251) | institution | Polish governmental agency that administers governmental activities in science and higher education. Funding is provided by the state for scientific research. | funding, government, agency, higher education, scientific research, public, poland | ISNI: 0000 0001 0684 6072, Wikidata: Q4294468, grid.425823.a, Crossref funder ID: 501100004569, nlx_149369 | https://ror.org/05dwvd537 | http://www.nauka.gov.pl/en/ | SCR_000251 | Ministry of Science and Higher Education - Republic of Poland, Polish Ministry of Science Higher Education, Ministry of Science and Higher Education (Poland) | 2026-02-07 02:05:20 | 9 | ||||||||
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Polytechnic University of Catalonia; Barcelona; Spain Resource Report Resource Website 1+ mentions |
Polytechnic University of Catalonia; Barcelona; Spain (RRID:SCR_000252) | UPC | university | A public research university in Spain which specializes in the fields of architecture, engineering and technology at the undergraduate, graduate and postdoctoral level. UPC focuses heavily on internationalization, this is demonstrated through their large population of international PhD and master's degree students. They are a member of the Top Industrial Managers for Europe network and several university federations, including the Conference of European Schools for Advanced Engineering Education and Research (CESAER). | public, architecture, engineering, technology, catalan, internationalization, architecture | is parent organization of: TaxoAssignement | nlx_158613 | SCR_000252 | Universitat Politècnica de Catalunya, Universitat Politècnica de Catalunya BarcelonaTech, UPC BarcelonaTech, Universitat Politecnica de Catalunya, Universitat Politecnica de Catalunya BarcelonaTech, BarcelonaTech, Polytechnic University of Catalonia | 2026-02-07 02:05:19 | 1 | ||||||||
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RNASeqReadSimulator Resource Report Resource Website 1+ mentions |
RNASeqReadSimulator (RRID:SCR_000270) | RNASeqReadSimulator | software resource | A software tool to generate simulated single-end or paired-end RNA-Seq reads. # It allows users to randomly assign expression levels of transcripts and generate simulated single-end or paired-end RNA-Seq reads. # It is able to generate RNA-Seq reads that have a specified positional bias profile. # It is able to simulate random read errors from sequencing platforms. # The simulator consists of a few simple Python scripts. All scripts are command line driven, allowing users to invoke and design more functions. | rna-seq, command line | is listed by: OMICtools | Free, Available for download, Freely available | OMICS_01964 | SCR_000270 | 2026-02-07 02:05:19 | 1 | ||||||||
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MODENT - A Tool For Reconstructing Gene Regulatory Networks Resource Report Resource Website 1+ mentions |
MODENT - A Tool For Reconstructing Gene Regulatory Networks (RRID:SCR_000220) | ModEnt | software resource | A computational tool that reconstructs gene regulatory networks from high throughput experimental data. | gene regulatory network, experimental data, computation, computational tool, bio.tools |
is listed by: OMICtools is listed by: bio.tools is listed by: Debian has parent organization: Tel Aviv University; Ramat Aviv; Israel |
PMID:22216865 | Free, Available for download, Freely available | biotools:modent, OMICS_01685 | https://bio.tools/modent | SCR_000220 | 2026-02-07 02:05:18 | 1 | ||||||
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GOLD Resource Report Resource Website 10+ mentions |
GOLD (RRID:SCR_000188) | GOLD | software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 31,2025. A software for virtual screening and identifying the binding mode of active molecules. It is comprehensively validated, widely used, and allows for high database enrichments. The software utilizes a novel methodology which avoids computationally expensive sequential docking of ligands into multiple protein structures. | virtual screening, binding, active molecules, ligand-protein bonding, computation, protein structures, lead optimization |
is listed by: OMICtools is listed by: SoftCite |
THIS RESOURCE IS NO LONGER IN SERVICE | OMICS_01602 | SCR_000188 | 2026-02-07 02:05:20 | 18 | ||||||||
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Context Likelihood of Relatedness Resource Report Resource Website 1+ mentions |
Context Likelihood of Relatedness (RRID:SCR_000216) | CLR | software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 31,2025. A software that infers regulatory interactions between transcription factors and their targets using a compendium of gene expression profiles. | transcription factors, gene expression profile, regulatory interactions, likelihood, relatedness | is listed by: OMICtools | PMID:17214507 | THIS RESOURCE IS NO LONGER IN SERVICE | OMICS_01682 | http://gardnerlab.bu.edu/software&tools.html, | SCR_000216 | 2026-02-07 02:05:18 | 1 | ||||||
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Council for Scientific and Industrial Research; Gauteng; South Africa Resource Report Resource Website 1+ mentions |
Council for Scientific and Industrial Research; Gauteng; South Africa (RRID:SCR_000214) | CSIR | nonprofit organization | A leading scientific and technology research, development and implementation organization in Africa that undertakes directed research and development for socio-economic growth and improving the quality of life of South African citizens. | south africa, global economy, south african parliament, quality of life | is related to: Pharma-Planta Consortium | nlx_158309, Crossref funder ID: 501100001332, ISNI: 0000 0004 0607 1766, grid.7327.1, Wikidata: Q849145 | https://ror.org/05j00sr48 | SCR_000214 | CSIR South Africa, Council for Scientific and Industrial Research | 2026-02-07 02:05:17 | 3 | |||||||
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GENIE3 Resource Report Resource Website 1+ mentions |
GENIE3 (RRID:SCR_000217) | GENIE3 | software resource | An algorithm for the inference of gene regulatory networks from expression data. | javascript, bio.tools |
is listed by: OMICtools is listed by: bio.tools is listed by: Debian |
PMID:20927193 | Free, Available for download, Freely available | biotools:genie3, OMICS_01683 | https://bio.tools/genie3 | http://www.montefiore.ulg.ac.be/~huynh-thu/software.html | SCR_000217 | 2026-02-07 02:05:18 | 9 |
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