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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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FCS Express Resource Report Resource Website 100+ mentions |
FCS Express (RRID:SCR_016431) | software resource, software application, data analysis software, data processing software | Software tool for flow and image cytometry data analysis by De Novo Software company. | flow, image, analysis, data, cytometry, De Novo Software, research, clinical, laboratory | is listed by: SoftCite | Commercially available, Tutorial available | SCR_016431 | 2026-02-12 09:46:30 | 488 | ||||||||||
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JAX Mice and Services Resource Report Resource Website 10+ mentions |
JAX Mice and Services (RRID:SCR_016408) | JAX, JAX MS, JMS, IMSR_JAX | organism supplier, material resource, biomaterial supply resource | Supplier of mice for research purposes. | RIN, Resource Information Network, mouse, strain, supply, research, repository, subject, genetic engineering, knockout, mice, gene, model, RRID Community Authority |
is listed by: International Mouse Strain Resource is listed by: Resource Information Network is related to: Knockout Mouse Project Repository at JAX is parent organization of: Diversity Outbred Database works with: International Mouse Strain Resource |
SCR_016408 | Mice and Services, JAX Mice, JAX Mouse Service, JAX Mice Service, JAX Mouse and Services | 2026-02-12 09:46:20 | 13 | |||||||||
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Taconic Biosciences Resource Report Resource Website 100+ mentions |
Taconic Biosciences (RRID:SCR_016410) | TAC, TB | organism supplier, material resource, biomaterial supply resource | Supplier of mice for research purposes. | RIN, Resource Information Network, mouse, strain, supply, research, repository, subject, genetic engineering, knockout, mice, gene, model, transgenic, RRID Community Authority |
is listed by: Resource Information Network works with: International Mouse Strain Resource |
SCR_016410 | Taconic Mouse Supply, Taconic Mice, eTaconic, Taconic, Taconic Bioscience, Taconic Bio Sciences | 2026-02-12 09:46:49 | 223 | |||||||||
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PNNsMiceMachineVision Resource Report Resource Website 1+ mentions |
PNNsMiceMachineVision (RRID:SCR_016485) | PNNsMiceMachineVision | source code, software resource, database, software application, data or information resource | Data and code (Python) related to research paper: V. Javier Traver, Filiberto Pla, Marta Miquel, Maria Carbo-Gas, Isis Gil-Miravet, Julian Guarque-Chabrera "Cocaine-induced preference conditioning: a machine vision perspective". | data, code, Phyton, research, paper, probabilistic, neural, network | Free, Available for download, Freely available | SCR_016485 | Probabilistic Neural Networks MiceMachineVision | 2026-02-12 09:46:32 | 2 | |||||||||
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NRRL ARS Culture Collection Resource Report Resource Website 10+ mentions |
NRRL ARS Culture Collection (RRID:SCR_016465) | NRRL ARS | organism supplier, material resource, biomaterial supply resource | Center that collects, deposits, maintains bacteria and fungi, and facilitates microbiological research to advance agricultural production, food safety, public health, and economic development. Housed within the Mycotoxin Prevention and Applied Microbiology Research Unit at the National Center for Agricultural Utilization Research in Peoria, Illinois. | collect, deposit, maintain, facilitate, microbiology, research, agriculture, bacteria, fungi | SCR_016465 | NRRL:Northern Regional Research Laboratory, ARS:Agricultural Research Service | 2026-02-12 09:46:34 | 35 | ||||||||||
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MIRRI Resource Report Resource Website 1+ mentions |
MIRRI (RRID:SCR_016461) | MIRRI | european biobank, software resource, organization portal, data access protocol, service resource, web service, biobank, topical portal, database, storage service resource, organism-related portal, data or information resource, portal, material storage repository | Microbial stock center. Collaborative platform for the pan-European research infrastructure for microbial resources. Provides access to microorganisms, their derivatives, associated data and services for research, development and application. | European, research, infrastructure, microbial, resource, database, service, stock, center | the European Commission 312251; the European Union’s Seventh Framework Programme 312251 |
Free, Freely available | SCR_016461 | Microbal Resource Research Infrastructure | 2026-02-12 09:46:20 | 9 | ||||||||
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Global Catalogue of Microorganisms Resource Report Resource Website 1+ mentions |
Global Catalogue of Microorganisms (RRID:SCR_016460) | GCM | topical portal, database, organism-related portal, data or information resource, portal | Database and information retrieval, analysis, and visualization system for microbial resources to help culture collections to manage, disseminate and share the information related to their holdings. Provides an interface for the scientific and industrial communities to access the microbial resource information. | research, deep, mining, genomic, data, retrival, analysis, visualisation, , microbial, resource, | the Strategic Priority Research Program of the Chinese Academy of Sciences ; the Bureau of International Cooperation of the Chinese Academy of Sciences ; the National Key Research Program of China ; the 13th Five-year Informatization Plan of the Chinese Academy of Sciences ; the National Science Foundation for Young Scientists of China |
PMID:29718202 | Free, Available to the scientific and industrial communities | r3d100010696 | https://doi.org/10.17616/R3J315 | SCR_016460 | GCM:Global Catalogue of Microorganisms | 2026-02-12 09:46:34 | 5 | |||||
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Induced Mutant Resource Resource Report Resource Website 1+ mentions |
Induced Mutant Resource (RRID:SCR_008366) | IMR | organism supplier, material resource, biomaterial supply resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented on June 08, 2012. The function of the IMR is to select, import, cryopreserve, maintain, and distribute these important strains of mice to the research community. To improve their value for research, the IMR also undertakes genetic development of stocks, such as transferring mutant genes or transgenes to defined genetic backgrounds and combining transgenes and/or targeted mutations to create new mouse models for research. The function of the IMR is to: * select biomedically important stocks of transgenic, chemically induced, and targeted mutant mice * import these stocks into the Jackson Laboratory by rederivation procedures that rid them of any pathogens they might carry * cryopreserve embryos from these stocks to protect them against accidental loss and genetic contamination * backcross the mutation onto an inbred strain, if necessary * distribute them to the scientific community More than 1000 mutant stocks have been accepted by the IMR from 1992 through December 2006. Current holdings include models for research on cancer; breast cancer; immunological and inflammatory diseases; neurological diseases; behavioral, cardiovascular and heart diseases; developmental, metabolic and other diseases; reporter (e.g., GFP) and recombinase (e.g., cre/loxP) strains. About eight strains a month are being added to the IMR holdings. Research is being conducted on improved methods for assisted reproduction and speed congenic production. Most of the targeted mutants arrive on a mixed 129xC57BL/6 genetic background, and as many of these as possible are backcrossed onto an inbred strain (usually C57BL/6J). In addition, new mouse models are being created by intercrossing carriers of specific transgenes and/or targeted mutations. Simple sequence length polymorphism DNA markers are being used to characterize and evaluate differences between inbred strains, substrains, and embryonic stem cell lines. | embryo, genetic, behavioral, biomedical, breast cancer, cancer, cardiovascular, chemical, cre, cryopreserved, developmental, disease, distribution, dna, gfp, heart, immunological, inflammatory, loxp, marker, metabolic, model, mouse, mutation, neurological, pathogen, polymorphism, recombinase, research, stock, targeting, transgene | has parent organization: Jackson Laboratory | March of Dimes Birth Defects Foundation ; American Cancer Society ; American Heart Association ; Cystic Fibrosis Foundation ; National Multiple Sclerosis Society ; Amyotrophic Lateral Sclerosis Association ; NIAID ; NIAMS ; Howard Hughes Medical Institute ; Department of the Army Breast Cancer Research Initiative. ; NCRR P40 RR009781 |
THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-25566 | SCR_008366 | 2026-02-12 09:44:40 | 3 | |||||||
|
Australian Medical Bioinformatics Resource Resource Report Resource Website 1+ mentions |
Australian Medical Bioinformatics Resource (RRID:SCR_008385) | topical portal, research forum portal, disease-related portal, data or information resource, portal | THIS RESOURCE IS NO LONGER IN SERVICE, documented September 6, 2016. AMBeR's aim is to bring together Australia's unique resources for genetic epidemiology and genomics with high level expertise in bioinformatics and statistical science, conduct advanced methodological research, develop new research capacity and competitiveness in cutting-edge techniques, bring them to bear on important medical research problems, train young Australians in bioinformatics and advanced biostatistics, and transfer this expertise to the medical research community. | medical, bioinformatics, statistical, science, genomics, epidemiology, research, methodological, techniques, biostatistics | has parent organization: University of Western Australia; Perth; Australia | Medical Bioinformatics ; National Health ; MRC ; Genomics and Proteomics Program |
THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-30032 | SCR_008385 | AMBeR | 2026-02-12 09:44:48 | 1 | |||||||
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Eric H. Chundlers Links Resource Report Resource Website 1+ mentions |
Eric H. Chundlers Links (RRID:SCR_008328) | training resource, funding resource, topical portal, data or information resource, portal | This web site focuses on neuroscience, the study of the nervous system. Links on this page are limited to those Dr. Chundler finds to be the most interesting and useful. | grant, nervous system, neuroscience, research, science | has parent organization: University of Washington; Seattle; USA | nif-0000-24694 | SCR_008328 | Eric H. Chundler''s Links | 2026-02-12 09:44:38 | 1 | |||||||||
|
CGEMS Resource Report Resource Website 10+ mentions |
CGEMS (RRID:SCR_008445) | CGEMS | data or information resource, portal, topical portal | The project began as a pilot study to identify inherited genetic susceptibility to prostate and breast cancer. CGEMS has developed into a robust research program involving genome-wide association studies (GWASs) for a number of cancers to identify common genetic variants that affect a person''s risk of developing cancer. In collaboration with extramural scientists, NCI''s Division of Cancer Epidemiology and Genetics (DCEG) has carried out genome-wide scans for breast, prostate, pancreatic, and lung cancers, while a GWAS of bladder cancer is currently underway. By making the data available to both intramural and extramural research scientists, as well as those in the private sector through rapid posting, NIH can leverage its resources to ensure that the dramatic advances in genomics are incorporated into rigorous population-based studies. Ultimately, findings from these studies may yield new preventive, diagnostic, and therapeutic interventions for cancer. Sponsors: This resource is supported by the U.S. National Institues Of Health. | cancer, genetic, marker, prostate, breast, research, genome, association, development, scientist, pancreatic, lung, bladder, science, genomics, population, study, theraphy, diagnosis |
has parent organization: National Cancer Institute has parent organization: National Cancer Institute |
nif-0000-30287 | SCR_008445 | The Cancer Genetic Markers of Susceptibility Project, Cancer Genetic Markers of Susceptibility, The Cancer Genetic Markers of Susceptibility | 2026-02-12 09:44:39 | 27 | ||||||||
|
Southwest National Primate Research Center Resource Report Resource Website 50+ mentions |
Southwest National Primate Research Center (RRID:SCR_008292) | data or information resource, portal, topical portal | Center that supports studies of nonhuman primate models of human diseases, including common chronic diseases and infectious diseases and the effects that genetics and the environment have on physiological processes and disease susceptibility. SNPRC encourages the use of its resources by investigators from the national and international biomedical research communities. | NPRC, NPRC Consortium, ORIP, environment, genetic, aids, animal, baboon, biomedical, breeding, chimpanzee, chronic, colony, disease, human, infectious, macaques, marmoset, nonhuman, physiological, population, primate, process, research, rhesus, specie, study, susceptibility, veterinary, spf, specific, pathogen, free |
is listed by: National Primate Research Center Consortium has parent organization: Texas Biomedical Research Institute; Texas; USA |
NIH Office of the Director P51 OD011133; NIH Office of the Director U42 OD010442 |
nif-0000-24359 | https://orip.nih.gov/comparative-medicine/programs/vertebrate-models | SCR_008292 | SNPRC | 2026-02-12 09:44:34 | 85 | |||||||
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Cambridge Neuroscience Department Resource Report Resource Website 1+ mentions |
Cambridge Neuroscience Department (RRID:SCR_008649) | data or information resource, portal, department portal, organization portal | This portal provides information about the neuroscience department at the University of Cambridge. Cambridge has a strong tradition in neuroscience having been host to the first analyses of neural signaling in the 1930s, determined the mechanisms of neuronal firing in the 1950s, and heralded some of the early theoretical approaches to the functions of neural circuitry in the 1960s. Neuroscience continues to grow at Cambridge, with an impressive record of achievement in multidisciplinary research. | education, analysis, circuitry, department, graduate, mechanism, neural, neuron, neuronal, neuroscience, research, signaling, theoretical, undergraduate | has parent organization: University of Cambridge; Cambridge; United Kingdom | nif-0000-33002 | SCR_008649 | Cambridge Neuroscience | 2026-02-12 09:44:42 | 1 | |||||||||
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Research Blogging Resource Report Resource Website 1+ mentions |
Research Blogging (RRID:SCR_008786) | Research Blogging | data or information resource, service resource, blog, narrative resource | Aggregator of blogs about new developments in science and other fields that allows readers to easily find blog posts about serious peer-reviewed research, instead of just news reports and press releases. If you''re a blogger who writes about serious research, Research Blogging offers you a way to distinguish your serious posts from news, politics, family, bagpipes, and so on. They can direct your regular readers - and new readers - to the posts you''ve worked the hardest to create. All you need to get started is a blog and a peer-reviewed research report that you''d like to discuss. How it works * Bloggers -- often experts in their field -- find exciting new peer-reviewed research they''d like to share. They write thoughtful posts about the research for their blogs. * Bloggers register and use a simple one-line form to create a snippet of code to place in their posts. This snippet not only notifies this site about their post, it also creates a properly formatted research citation for their blog. * Their software automatically scans registered blogs for posts containing their code snippet. When it finds them, it indexes them and displays them on their front page -- thousands of posts from hundreds of blogs, in one convenient place, organized by topic. * Their editors identify the notable posts in each major discipline, publishing the results on their news page. * Other services like PubGet index their database as well, so every time readers search for a journal article, they can also locate blog posts discussing the article. * The quality of the posts listed on their site is monitored by the member bloggers. If a post doesn''t follow their guidelines, it is removed from their database. Borderline cases may be discussed publicly on the blog as well. Bloggers are also provided with an icon they can use to show when they''re talking about a peer-reviewed work that they''ve read and analyzed closely. There are already over seven thousand blog posts using the icon, and now it''s easier than ever to find them. | aggregator, peer-reviewed research, database, science, anthropology, astronomy, biology, chemistry, computer science, engineering, ecology, conservation, geoscience, health, mathematics, medicine, neuroscience, philosophy, physics, psychology, social science, research, scholarship |
is used by: NIF Data Federation is used by: Integrated Blogs |
Free, Non-commercial, Commercial purposes with written authorization. | nlx_144211 | SCR_008786 | ResearchBlogging.org | 2026-02-12 09:44:41 | 5 | |||||||
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Biological Concept Diagram Editor Resource Report Resource Website |
Biological Concept Diagram Editor (RRID:SCR_008654) | BCDE | software application, data processing software, software resource, data visualization software | Biological Concept Diagram Editor (BCDE) is a conceptual relationship diagramming tool specifically designed for biomedical researchers. It allows for efficient knowledge and data capture, fast diagram creation, easy data retrieval, and flexible exporting. The BCDE application is the main diagramming tool in the system. Through it, users can create, modify, load, and save BCDE diagrams. The diagrams created with BCDE application are network oriented. Each BCDE figure can be annotated using fields from the BioPAX level II format. In addition, a user can add URL links and attachments to a BCDE figure. Diagrams generated in BCDE are stored in the BCDE XML format for better database integration and better data extraction. | biological, biomedical, concept, data visualization, diagram, drawing, research, software, tool |
is related to: National Center for Integrative Biomedical Informatics has parent organization: University of Michigan; Ann Arbor; USA |
nif-0000-33033 | SCR_008654 | 2026-02-12 09:44:42 | 0 | |||||||||
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MUSC Health Podcast Library Resource Report Resource Website |
MUSC Health Podcast Library (RRID:SCR_008827) | MUSC Health Podcast Library, MUSC Podcast | data or information resource, narrative resource, podcast | The MUSChealth.com Podcast Library, featuring podcasts on a variety of topics related to your health and our services here at MUSC. These medical podcasts are hosted by MUSC faculty, physicians and special guests and are produced and directed by Linda Austin, M.D. Current topics include: * Academics and Education * Aging, Geriatrics and Caregiving * Alcohol and Drug Dependency * Allergies and Asthma * Ashley River Tower * Bones, Joints, Muscles and Spine * Cancer * Children''s Health * Cosmetic Surgery * Dental * Dermatology/Skin Problems * Diabetes, Endocrinology and Metabolism * Digestive Health * ENT: Ear, Nose and Throat * Executive Health * Eye Health * General Health and Wellness * Heart and Vascular Health * Hospice * Kohl''s Take a Minute for Kids * Lungs and Breathing * Men''s Health * Mental Health * MUSC News and Events * Neurological Health * Organ Transplant * Osteoporosis * Pregnancy - Week by Week * Pregnancy and Childbirth * Radiology * Research and Clinical Trials * SC Health, Leadership and Policy * Sports Medicine * Stroke * Urology * Weight Loss Surgery Follow-up * Weight Management * Women''s Health | health, medical, academic, education, geriatrics, caregiving, alcohol addiction, drug dependency, allergy, asthma, bone, joint, muscle, spine, cancer, child, cosmetic surgery, tooth, dermatology, skin, diabetes, endocrinology, metabolism, digestive system, ear, nose, throat, eye, heart, vascular system, hospice, child, lung, breathing, man, mental health, neurology, organ transplant, osteoporosis, pregnancy, childbirth, radiology, research, clinical trial, leadership, policy, sports medicine, stroke, urology, weight loss, surgery, weight management, woman, human | has parent organization: Medical University of South Carolina; South Carolina; USA | Aging | nlx_144507 | SCR_008827 | MUSC Health Audio Podcasts, MUSChealth.com Podcast Library | 2026-02-12 09:44:53 | 0 | |||||||
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Neuroamer Resource Report Resource Website |
Neuroamer (RRID:SCR_000624) | Neuroamer | data or information resource, blog, narrative resource | Neuroamer is a researcher-oriented blog about neuroscience, psychiatry, and psychology. It is an attempt to fill the space between journal articles and pop science journalism. | neuroscience, psychiatry, psychology, addiction, psychiatric disease, research, blog, molecular, medicine | nlx_151649 | SCR_000624 | 2026-02-12 09:43:00 | 0 | ||||||||||
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Schizophrenia and Bipolar Disorder Genetics Blog Resource Report Resource Website 1+ mentions |
Schizophrenia and Bipolar Disorder Genetics Blog (RRID:SCR_001541) | data or information resource, blog, narrative resource | This resource aims to provide information for the general public on the background and current progress of scientific research into the role of genetics in these disorders. Additionally, it also aims to provide a forum for the discussion of aspects of psychiatric genetics open to members of the research community. | genetics, disorder, psychiatric, research, scientific | has parent organization: University of Edinburgh; Scotland; United Kingdom | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-10419 | SCR_001541 | Genetics Blog | 2026-02-12 09:43:11 | 2 | ||||||||
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Human Tissue and Organ for Research Resource (HTORR) Resource Report Resource Website |
Human Tissue and Organ for Research Resource (HTORR) (RRID:SCR_002859) | HTORR | tissue bank, material resource, biomaterial supply resource | NDRI’s Human Tissue and Organs for Research Resource (HTORR) Program has been funded by the National Institutes of Health (NIH) for over 30 consecutive years to support research programs across multiple disciplines. It is through the HTORR program that NDRI provides academic biomedical investigators with donated normal and diseased human tissues and organs recovered from a diverse donor pool using customized procurement, processing, and preservation and distribution protocols. Our HTORR Program supports academic biomedical research investigators needs by providing: Access to a wide array of human biospecimens from any body system * Customized procurement in a variety of preservation formats including fresh, frozen, and fixed suitable for various analytical techniques * Reduced costs for tissue procurement * Technical support to design your studies utilizing human biospecimens * Letters of support and budgetary information for grant applications | tissue, organ, nervous system, pulmonary system, cardiovascular system, endocrine system, eye, bone, cartilage, normal, diseased, human immunodeficiency virus, heart, kidney, lung, brain, liver, eye, bone, joint, disease, rare disease, endocrinology, eye bank, immunology, infectious disease, nephrology, nervous system, ophthalmology, pathology, pulmonary system, research, specimen, toxicology, transplantation, catalog |
is listed by: One Mind Biospecimen Bank Listing is listed by: Collaborating for the Advancement of Interdisciplinary Research in Benign Urology has parent organization: National Disease Research Interchange has parent organization: National Center for Research Resources |
Normal, Disease, Human immunodeficiency virus, Rare disease | NIH Office of the Director U42 OD011158 | Free, Freely available | nif-0000-25417 | https://orip.nih.gov/comparative-medicine/programs/genetic-biological-and-information-resources | http://www.ncrr.nih.gov/clinical%5Fresearch%5Fresources/resource%5Fdirectory/human_tissue_and_organ_resource_for_research/ | SCR_002859 | Human Tissue Organ Resource for Research, Human Tissues and Organs for Research, Human Tissues and Organs for Research (HTOR), Human Tissues Organs for Research | 2026-02-12 09:43:28 | 0 | |||
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Cleveland Clinic Genomic Medicine Biorepository Resource Report Resource Website 1+ mentions |
Cleveland Clinic Genomic Medicine Biorepository (RRID:SCR_004136) | GMB | tissue bank, material resource, biomaterial supply resource | A biorepository is a place where investigators can deposit and store biological material, in this case samples derived from patients. Moreover, the Genomic Medicine Institute (GMI) takes this basic concept and elevates it to make the Genomic Medicine Biorepository (GMB) a full-service processing and banking laboratory that serves as the foundation for evidence-based research for the GMI, the Cleveland Clinic, and our collaborators. The process relies on a team of multi-disciplinary professionals coordinating their efforts in order to streamline medical research. This begins with dedicated physicians and genetic counselors identifying individuals with specific medical conditions indicating the possibility of genetic involvement. Once identified, biological material (e.g. blood, tissue, or saliva) is collected under the care of the patient''s doctor or by our clinicians and sent to the GMB. Once in the lab, the patient and their samples are assigned a unique identifier (to protect the patient''s personal information) and logged into a central database. This unique identifier accompanies all samples processed and banked for that individual. The specimens are then processed into research-relevant samples using proven laboratory techniques and state-of-the-art quality control practices. These samples include the isolation of DNA and RNA from white blood cells for genetic studies; collection of plasma for proteomic studies; and initiated immortalized cell lines from lymphocytes for in-vitro studies and biochemical research. These cell lines are able to be indefinitely stored in cryogenic suspension and are invaluable as a renewable resource for genetic and biochemical research. The GMB also processes genetic material from various tissues (both fresh and archived). Charis Eng, MD, PhD, Chair and Director of the GMI, has been the faculty oversight person of a human biorepository for the last eight years. Since then, our biorepository has received, cataloged, processed, and banked, in excess of 25,000 specimens. These samples are of numerous tissue types from patients and their family members located all over the world. Our biorepository has managed samples that have resulted in more than 150 original peer reviewed articles and greater than $25 million total direct costs in extramural funding over the last four years alone. | blood, tissue, saliva, dna, rna, plasma, cell line, cryogenic suspension, patient, family member, research |
is listed by: One Mind Biospecimen Bank Listing has parent organization: Cleveland Clinic |
Patient, Family member | Private and Collaborators: Serves the Genomic Medicine Institute, The Cleveland Clinic, And our collaborators. | nlx_59927 | SCR_004136 | Cleveland Clinic Genomic Medicine Institute Biorepository, GMI Biorepository, Genomic Medicine Biorepository, Genomic Medicine Institute Biorepository, Cleveland Clinic GMI Biorepository | 2026-02-12 09:43:45 | 1 |
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