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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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T1D Exchange Biobank Resource Report Resource Website 1+ mentions |
T1D Exchange Biobank (RRID:SCR_017195) | material storage repository, storage service resource, biobank, data or information resource, service resource | Collection of biological samples linked to participant medical data from individuals living with type 1 diabetes. Unifies samples and data from eight different clinical studies related to type 1 diabetes. | collection, biological, sample, data, clinical, diabetes |
is related to: Type 1 Diabetes Knowledge Portal has parent organization: T1D Exchange |
Type 1 diabetes, Diabetes | Restricted | SCR_017195 | 2026-02-14 02:03:09 | 2 | |||||||||
|
VETA Resource Report Resource Website 1+ mentions |
VETA (RRID:SCR_017201) | data visualization software, data processing software, data acquisition software, data analysis software, software application, software resource | Software suite of functions for EMG data visualization and processing. Open source Matlab toolbox for electromyography combined with transcranial magnetic stimulation. MATLAB toolbox for the collection, analysis, and visualization of EMG and TMS. | Electromyography, transcranial, magnetic, stimulation, analysis, EMG, TMS, data, bio.tools |
is listed by: Debian is listed by: bio.tools |
NCATS TR002370 | PMID:31572120 | Free, Available for download, Freely available | BioTools:VETA, biotools:VEtA | https://github.com/greenhouselab/Veta/tree/master/data https://bio.tools/VETA https://bio.tools/VETA https://bio.tools/VETA |
SCR_017201 | 2026-02-14 02:03:09 | 2 | ||||||
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Rice_HxD_Recovery_Metabolomics Resource Report Resource Website 1+ mentions |
Rice_HxD_Recovery_Metabolomics (RRID:SCR_017204) | data visualization software, data processing software, data analysis software, source code, software application, software resource | Software tool as source code used in analysis of GC MS data from rice samples. Workflow for statistical analysis of GC MS data from field grown rice collected during rewatering after exposure to combined drought and heat stress. | analysis, GC-MS, data, rice, sample, statistics, workflow | Free, Available for download, Freely available | SCR_017204 | 2026-02-14 02:03:24 | 1 | |||||||||||
|
University of Cambridge Department of Plant Sciences Bioinformatics Core Facility Resource Report Resource Website |
University of Cambridge Department of Plant Sciences Bioinformatics Core Facility (RRID:SCR_017164) | University of Cambridge Bioinformatics Core Facility | data analysis service, core facility, analysis service resource, production service resource, service resource, access service resource | Core provides assistance in data analysis to support members of Plant Sciences. | bioinformatics, data, analysis, service | has parent organization: University of Cambridge; Cambridge; United Kingdom | SCR_017164 | Department of Plant Sciences, Core Facility, Bioinformatics, University of Cambridge | 2026-02-14 02:03:15 | 0 | |||||||||
|
UCSF Gladstone Institutes Bioinformatics Core Facility Resource Report Resource Website |
UCSF Gladstone Institutes Bioinformatics Core Facility (RRID:SCR_017178) | UCSF Gladstone Institutes Bioinformatics Core | training service resource, data analysis service, core facility, analysis service resource, data or information resource, production service resource, service resource, software resource, access service resource | Core provides consulting services, sequencing, data analysis, and programming assistance. Used for Experimental Design and Power Analysis Consultation, RNA-seq, ChIP-seq, ATAC-seq analysis, Statistics consulting, Variant calling, Data normalization across multiple projects, General programming, Custom Figures for publication, tutorials for learning common software tools. | Bioinformatics, consulting, data, analysis, sequencing, RNA-seq, DNA-seq, ChIP-seq, ATAC-seq, statistics, variant, calling, normalization | Open | SCR_017178 | Bioinformatics Core, Gladstone Core Services, University California San Fransisco, UCSF, Gladstone Institutes | 2026-02-14 02:03:24 | 0 | |||||||||
|
Bonsai Resource Report Resource Website 50+ mentions |
Bonsai (RRID:SCR_017218) | software resource, data processing software, data acquisition software, software application | Software event based framework for processing and controlling data streams. Visual language designed for making software systems that require rich and rapid interaction with external world. | Event, based, framework, processing, controlling, data, stream | European Union Seventh Framework Programme ; Bial Foundation ; Foundation for Science and Technology ; Champalimaud Foundation |
PMID:25904861 | Free, Available for download, Freely available | https://github.com/bonsai-rx/bonsai-rx.github.io | SCR_017218 | 2026-02-14 02:03:22 | 88 | ||||||||
|
University of Manchester Bioinformatics Core Facility Resource Report Resource Website 1+ mentions |
University of Manchester Bioinformatics Core Facility (RRID:SCR_017171) | Manchester Bioinformatics Facility | data analysis service, core facility, analysis service resource, production service resource, service resource, software resource, access service resource | Core provides assistance in integrative analysis of genomic datasets to support faculty. | bioinformatics, analysis, genomic, data, dataset | has parent organization: University of Manchester; Manchester; United Kingdom | Restricted | SCR_017171 | , Bioinformatics Facility, University of Manchester, Bioinformatics Core Facility | 2026-02-14 02:03:15 | 2 | ||||||||
|
PIVOT software Resource Report Resource Website 10+ mentions |
PIVOT software (RRID:SCR_017210) | PIVOT | data analysis software, software resource, data processing software, software application | Software R package for interactive analysis and visualization of transcriptomics data. Operating systems are macOS, Linux, Windows. | Interactive, analysis, visualization, transcriptomics, data | is related to: University of Pennsylvania; Philadelphia; USA | NIMH U01 MH098953 | PMID:29304726 | Free, Available for download, Freely available | SCR_017210 | Platform for Interactive analysis and Visualization Of Transcriptomics, PIVOT, KimLabIDV | 2026-02-14 02:03:25 | 17 | ||||||
|
Vall dHebron Institut de Recerca Statistics and Bioinformatics Unit Core Facility Resource Report Resource Website |
Vall dHebron Institut de Recerca Statistics and Bioinformatics Unit Core Facility (RRID:SCR_017175) | UEB | training service resource, data analysis service, core facility, analysis service resource, data or information resource, production service resource, service resource, software resource, access service resource | Core at Vall dHebron Institut de Recerca, Barcelona, Spain to provide data analysis, softwares and training programs in statistics and bioinformatics for clinical research at VHIR. | bioinformatics, next, generation, sequencing, data, analysis, DNA, RNA, omics, microarray, RTqPCR, metagenomics, methylation | Restricted | SCR_017175 | , Barcelona, Vall dHebron Institut de Recerca, Support Unit in Methodology for Biomedical Research, UEB, Statistics and Bioinformatics Unit, USMIB | 2026-02-14 02:03:21 | 0 | |||||||||
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Duke University Omics Data Analysis Core Facility Resource Report Resource Website |
Duke University Omics Data Analysis Core Facility (RRID:SCR_017174) | training service resource, data analysis service, core facility, analysis service resource, data or information resource, production service resource, service resource, access service resource | Genomic Analysis and Bioinformatics core for data analysis associated with performing complex and data intensive projects in life science research of Duke University and Duke Medical School. Provides expertise, training, data analysis in next generation sequencing, array and proteomic based technologies. | bioinformatics, data, analysis, training, expertise, next, generation, sequencing, array, proteomic, omics | has parent organization: Duke University; North Carolina; USA | Restricted | SCR_017174 | Analysis Core, Resource, Core Facility, Genomic Analysis and Bioinformatics, Duke University, Omics Data | 2026-02-14 02:03:09 | 0 | |||||||||
|
BICCN Cell Registry Resource Report Resource Website 10+ mentions |
BICCN Cell Registry (RRID:SCR_017267) | data or information resource | Searchable table of datasets. Data generated from projects through BRAIN Initiative Cell Census Network. Datasets can be filtered by species, research investigator, grant number or experimental technique. Includes links to data directories at data archives and links to protocols. | data, dataset, brain, initiative, cell, registry |
is related to: BRAIN Cell Data Center is related to: BRAIN Cell Data Center has parent organization: Allen Institute for Brain Science is provided by: BICCN |
NIH | Free, Freely available, Available for download | http://www.brainimagelibrary.org/download.html https://nemoarchive.org/resources/data-download.php |
SCR_017267 | BRAIN Initiative Cell Census Network Cell Registry, BICCN Cell Registry | 2026-02-14 02:03:25 | 11 | |||||||
|
brainGraph Resource Report Resource Website 10+ mentions |
brainGraph (RRID:SCR_017260) | data analysis software, software resource, data processing software, software application | Software R package for performing graph theory analyses of brain MRI data. | graph, theory, analysis, brain, MRI, data |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: CRAN |
Free, Available for download, Freely available | https://www.nitrc.org/projects/braingraph/ https://rdrr.io/cran/brainGraph/ https://www.r-pkg.org/pkg/brainGraph |
SCR_017260 | brainGraph - Graph Theory Analysis of Brain MRI Data in R, brainGraph | 2026-02-14 02:03:23 | 11 | ||||||||
|
SynapseLocator Resource Report Resource Website 1+ mentions |
SynapseLocator (RRID:SCR_017263) | image processing software, software resource, data processing software, software application | Software tool that combines steps of image processing, non rigid image registration, and spot localisation. Performs registration of 3D imaging data and localization of spots, active synapses in light microscopy images, in semi automatic mode with graphical user interface. | image, processing, registration, spot, localisation, 3D, data, active, synapses, microscopy |
is related to: MATLAB is related to: Fiji |
DOI:https://doi.org/10.1101/538041 | Free, Available for download, Freely available | SCR_017263 | 2026-02-14 02:03:10 | 1 | |||||||||
|
Rikshospitalet-Radiumhospitalet and University of Oslo Bioinformatics Core Facility Resource Report Resource Website |
Rikshospitalet-Radiumhospitalet and University of Oslo Bioinformatics Core Facility (RRID:SCR_017152) | BCF | data analysis service, core facility, analysis service resource, data or information resource, production service resource, service resource, access service resource, database | Core facility provides high throughput sequencing data analysis, metagenomics data analysis, proteomics data analysis, protein structure analysis, functional genomics, programming, scripting, and database or web services. | metagenomics, proteomics, protein, structure, functional, genomics, programming, scripting, data | Restricted | SCR_017152 | BCF, Core Facility, University of Oslo, Rikshospitalet-Radiumhospitalet, Bioinformatics | 2026-02-14 02:03:09 | 0 | |||||||||
|
Mass spectrometry imaging workbench Resource Report Resource Website 50+ mentions |
Mass spectrometry imaging workbench (RRID:SCR_017410) | data analysis software, software resource, data processing software, software application | Software tool for analysis of mass spectrometry imaging data implemented in Galaxy framework. Provides options to analyze mass spectrometry imaging data in imzML file format, including quality control, visualization, preprocessing, statistical analysis, image co-registration and feature identification.Galaxy docker container for mass spectrometry imaging. | Analysis, mass, spectrometry, imaging, data, Galaxy, framework, imzML, file, quality, control, visualization, statistics, docker, container | is related to: University of Freiburg; Baden-Wurttemberg; Germany | DOI:10.1101/628719 | Free, Available for download, Freely available | https://github.com/foellmelanie/docker-galaxy-msi https://galaxyproject.org/use/msi/ |
SCR_017410 | 2026-02-14 02:03:25 | 98 | ||||||||
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Connectome Computation System Resource Report Resource Website 10+ mentions |
Connectome Computation System (RRID:SCR_017342) | CCS | data analysis software, software resource, data processing software, software application | Software tool for multimodal human brain imaging data analysis. Computational pipeline for discovery science of human brain connectomes at macroscale with multimodal magnetic resonance imaging technologies. | Multimodal, human, brain, imaging, data, analysis, connectome, magnetic, resonance | DOI:10.1007/s11434-014-0698-3 | Free, Available for download, Freely available | SCR_017342 | 2026-02-14 02:03:11 | 15 | |||||||||
|
miRpathDB Resource Report Resource Website 50+ mentions |
miRpathDB (RRID:SCR_017356) | web service, data or information resource, data access protocol, software resource, database | Collection of single miRNAs that regulate pathways, gene ontologies and other categories, hence complementing available miRNA target enrichment programs, tailored for miRNA sets. New dictionary on microRNAs and target pathways. Database to augment available target pathway web-servers by providing researches access to information which pathways are regulated by miRNA, which miRNAs target pathway and how specific regulations are. | Collection, miRNA, data, pathway, gene, ontology, dataset, dictionary, target, regulation, bio.tools |
is listed by: bio.tools is listed by: Debian |
Saarland University ; Germany |
PMID:27742822 | biotools:miRPathDb | https://bio.tools/miRPathDB | SCR_017356 | miRNA Pathway Dictionary Database | 2026-02-14 02:03:19 | 52 | ||||||
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fastMNN Resource Report Resource Website 1+ mentions |
fastMNN (RRID:SCR_017351) | data analysis software, software resource, data processing software, software application | Software tool to correct for batch effects in single-cell expression data using fast version of mutual nearest neighbors (MNN) method. | Correct, batch, effect, single, cell, expression, data, fast, version, mutual, nearest, neighbors | Free, Available for download, Freely available | SCR_017351 | Fast Mutual Nearest Neighbors | 2026-02-14 02:03:19 | 7 | ||||||||||
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redbiom Resource Report Resource Website 1+ mentions |
redbiom (RRID:SCR_017285) | data processing software, data analysis service, analysis service resource, data analysis software, production service resource, service resource, software application, software resource | Software tool for allowing samples that contain microbiome features to be rapidly identified. Rapid sample discovery and feature characterization system. Integrated with existing analysis tools to enable fast, large scale microbiome searches and discovery of new microbiome relationships. Service for sample metadata and sample data. | microbiome, feature, identify, characterize, analysis, metadata, sample, data | PMID:31239397 | Free, Available for download, Freely available | SCR_017285 | 2026-02-14 02:03:10 | 5 | ||||||||||
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SerialEM Resource Report Resource Website 100+ mentions |
SerialEM (RRID:SCR_017293) | software resource, data processing software, data acquisition software, software application | Software tool for automated EM data acquisition. Used for efficient tilt series acquisition and interface for image capture, display, and storage and for control of some aspects of microscope function. | automated, data, acquisition, tilt, image, capture, display, storage, microscope | NCRR RR00592; NIGMS P01 GM61306 |
PMID:16182563 | Restricted | SCR_017293 | 2026-02-14 02:03:23 | 213 |
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