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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Brain Intensity AbNormality Classification Algorithm Resource Report Resource Website 1+ mentions |
Brain Intensity AbNormality Classification Algorithm (RRID:SCR_024928) | BIANCA | data processing software, software application, segmentation software, software resource, image analysis software | Software tool for automated segmentation of white matter hyperintensities. Classifies image’s voxels based on their intensity and spatial features, and the output image represents the probability per voxel of being WMH. Flexible in terms of MRI modalities to use and offers different options for weighting spatial information, local spatial intensity averaging, and different options for choice of number and location of training points. | images voxels classification, automated segmentation of white matter hyperintensities, white matter hyperintensities, | is a plug in for: FSL | Wellcome Trust ; Wolfson Foundation ; UK Stroke Association ; NIHR Oxford Biomedical Research Centre |
PMID:27402600 | Free, Freely available | SCR_024928 | BIANKA:Brain Intensity AbNormality Classification Algorithm | 2026-02-13 10:59:24 | 3 | ||||||
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RNAmut Resource Report Resource Website |
RNAmut (RRID:SCR_026965) | software resource, source code, software toolkit | Software package for robust identification of somatic mutations in acute myeloid leukemia using RNA-sequencing. Detects clinically important somatic mutations from RNA-seq data on relatively small gene panel (typically less than 100 genes). | identification of somatic mutations, acute myeloid leukemia, RNA-sequencing, clinically important somatic mutations, RNA-seq data, small gene panel, | Wellcome Trust ; European Research Council ; European Union Horizon 2020 |
PMID:31649132 | Free, Available for download, Freely available | SCR_026965 | 2026-02-13 10:59:49 | 0 | |||||||||
|
ped-sim Resource Report Resource Website 1+ mentions |
ped-sim (RRID:SCR_026957) | software resource, simulation software, source code, software application | Software tool to simulate pedigree structures. Used for simulating relatives that can utilize either sex-specific or sex averaged genetic maps and also either model of crossover interference or traditional Poisson model for inter-crossover distances. | Pedigree simulator, simulate pedigree structures, simulating relatives, sex-specific, sex averaged, genetic maps, | NIGMS R35 GM133805; Alfred P. Sloan Research Fellowship ; United States-Israel Binational Science Foundation ; NHLBI R01 HL0113323; NHLBI P01 HL045222; NIDDK R01 DK047482; NIDDK R01 DK053889; NIGMS T32 GM007617; NIGMS T32 GM083937; Wellcome Trust |
PMID:31860654 | Free, Available for download, Freely available | SCR_026957 | Ped-sim | 2026-02-13 10:59:50 | 2 | ||||||||
|
TWOMBLI Resource Report Resource Website |
TWOMBLI (RRID:SCR_027217) | software resource, source code, software toolkit | Software pipeline includes metrics of matrix alignment, length, branching, end points, gaps, fractal dimension, curvature, and the distribution of fibre thickness. FIJI macro for quantifying pattern in extracellular matrix. | quantifying pattern in extracellular matrix, matrix alignment, length, branching, end points, gaps, fractal dimension, curvature, distribution of fibre thickness, | is a plug in for: Fiji | Cancer Research UK ; UK Medical Research Council ; Wellcome Trust ; Spanish Society for Medical Oncology |
PMID:33504622 | Free, Available for download, Freely available, | SCR_027217 | Workflow Of Matrix BioLogy Informatics, , Workflow Of Matrix BioLogy Informatics (TWOMBLI) | 2026-02-13 10:59:52 | 0 | |||||||
|
Vireo Resource Report Resource Website 1+ mentions |
Vireo (RRID:SCR_027463) | software resource, source code, software application | Software tool for Bayesian demultiplexing of pooled single-cell RNA-seq data without genotype reference. | Bayesian demultiplexing, pooled single-cell RNA-seq data, without genotype reference, | University of Cambridge ; EMBL-EBI ; National Health and Medical Research Council of Australia ; Wellcome Trust ; Medical Research Council |
PMID:31836005 | Free, Available for download, Freely available | SCR_027463 | 2026-02-13 10:59:57 | 1 | |||||||||
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Cell Model Passports Resource Report Resource Website 1+ mentions |
Cell Model Passports (RRID:SCR_027682) | data or information resource, catalog, database | Hub for clinical, genetic and functional datasets of preclinical cancer models.Provides details of cell model relationships, patient and clinical information, as well as access to associated genetic and functional datasets. Passports database contains curated details and standardized annotation for cell models, including cancer organoid cultures. Users can navigate database via tissue, cancer-type, genetic feature and data availability to select model. REST-API provides programmatic data access and exploration. | clinical, genetic, functional, datasets, preclinical cancer models, | has parent organization: Wellcome Trust Sanger Institute; Hinxton; United Kingdom | Wellcome Trust ; Wellcome Sanger Institute |
PMID:30260411 | Free, Freely available | SCR_027682 | 2026-02-13 11:00:00 | 2 | ||||||||
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University of Edinburgh Wellcome Trust Centre for Cell Biology Bioinformatics Core Facility Resource Report Resource Website |
University of Edinburgh Wellcome Trust Centre for Cell Biology Bioinformatics Core Facility (RRID:SCR_017151) | University of Edinburgh WTCCB Bioinformatics Core Facility | core facility, access service resource, service resource | Facility provides regular training sessions, tools, advice and data analysis services to Centre members. | core, facility, bioinformatics | has parent organization: University of Edinburgh; Scotland; United Kingdom | Wellcome Trust | Restricted | SCR_017151 | 2026-02-13 10:57:54 | 0 |
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