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http://purl.bioontology.org/ontology/ONSTR

Application ontology covering the domain of newborn screening, follow-up and translational research pertaining to patients diagnosed with inheritable and congenital diseases mainly identified through newborn dried blood spot screening. ONSTR is a central component of the project Newborn Screening Follow-up Data Integration Collaborative (NBSDC), https://nbsdc.org. ONSTR uses the Basic Formal Ontology v2 (BFO2, v2012-07-20) as top-level ontology and extends the classes imported from OBO Foundry ontologies and candidate ontologies.

Proper citation: Ontology for Newborn Screening Follow-up and Translational Research (RRID:SCR_010389) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/OBOE-SBC

Extensible Observation Ontology for the Santa Barbara Coastal Long Term Ecological Research project (SBC-LTER). It extends core concepts defined in the OBOE suite that are particular to the Santa Barbara Coastal Long Term Ecological Research project''s data collection activities. These include specific measurement protocols, sites, etc. This is meant as a case study ontology for the Semtools project.

Proper citation: Santa Barbara Coastal Observation Ontology (RRID:SCR_010424) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/IDODEN

An ontology for dengue fever.

Proper citation: Dengue Fever Ontology (RRID:SCR_010304) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/STY

Ontology of semantic types.

Proper citation: Semantic Types Ontology (RRID:SCR_010425) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/DERMLEX

A standardized terminology of dermatologic diagnoses, therapies, procedures, and laboratory tests.

Proper citation: Dermatology Lexicon (RRID:SCR_010305) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/DOCCC

Diagnosis ontology of clinical care classification.

Proper citation: Diagnosis Ontology of Clinical Care Classification (RRID:SCR_010306) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/SIO

Ontology that provides a simple, integrated upper level ontology (types, relations) for consistent knowledge representation across physical, processual and informational entities. It provides vocabulary for the Bio2RDF (http://bio2rdf.org) and SADI (http://sadiframework.org) projects.

Proper citation: Semanticscience Integrated Ontology (RRID:SCR_010427) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/ONTODM-CORE

Generic ontology for the domain of data mining that includes the information processing processes that occur in the domain of data mining, participants in the processes and their specifications. OntoDM is highly transferable and extendable due to its adherence to accepted standards, and compliance with existing ontology resources. The generality in scope allows wide number of applications of the ontology, such as semantic annotation of data mining scenarios, ontology based support for QSARs, etc.

Proper citation: Ontology of Core Data Mining Entities (RRID:SCR_010393) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/PEDTERM

Terms associated with pediatrics, representing information related to child health and development from pre-birth through 21 years of age; contributed by the National Institute of Child Health and Human Development.

Proper citation: Pediatric Terminology (RRID:SCR_010395) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/OOEVV

Ontology that provides a lightweight representation of the variables used to measure experimental properties and the measurement scales that form the complex data types supporting that data. Many different variables measure the same thing, here they use a lightweight representation driven by a small number of classes and a large number of variables to focus only on providing a vocabulary of variables that may be extended for consolidation to standardized variables for specific things and functions to map between values from different measurements scales. They use the base ontology description to provide a very lightweight representation of the basic elements of an experimental design and they use views to instantiate it for specific domains.

Proper citation: Ontology of Experimental Variables and Values (RRID:SCR_010396) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/ONTODT

Ontology that contains entities such as: datatype, datatype generator, datatype quality and others giving the possibility to represent arbitrary complex datatypes. This is an important fact for a general data mining ontology that wants to represent and query over modelling algorithms for mining structured data. The ontology was first developed under the OntoDM (Ontology of Data Mining, http://kt.ijs.si/panovp/OntoDM) ontology, but for generality and reuse purpose it was decided to export it as a separate ontology. Additionaly, the OntoDT ontology is based on and ISO/IEC 11404 (http://www.iso.org/iso/catalogue_detail.htm?csnumber=39479) standard and can be reused used independently by any domain ontology that requires representation and reasoning about general purpose datatypes.

Proper citation: Ontology of General Purpose Datatypes (RRID:SCR_010397) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/ONTOMA

Ontology for common concepts for communication between traditional medicine and western medicine. (In French)

Proper citation: Ontology of Alternative Medicine French (RRID:SCR_010390) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/OGMD

Ontology including the disease names, phenotypes and their classifications involved in Glucose Metabolism Disorder, Diabetes. (OBO and OWL format are available in sourceforge.)

Proper citation: Ontology of Glucose Metabolism Disorder (RRID:SCR_010399) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/ELIG

A set of 1,437 eligibility features that were organized into a feature hierarchy using 80 breast cancer trials.

Proper citation: Eligibility Feature Hierarchy (RRID:SCR_010314) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/EMO

Ontology to describe the active components of the enzyme''s reactions (cofactors, amino acid residues and cognate ligands) and their roles in the reaction. EMO builds upon this by formalizing key concepts, and the relationships between them, necessary to define enzymes and their functions. This describes not only the general features of an enzyme, including the EC number (catalytic activity), 3D structure and cellular locations, but also allows for the detailed annotation of the mechanism. This mechanistic detail can be either at a gross level (overall reaction only), or the more detailed granularity of the steps and components required to effect the overall chemical transformation.

Proper citation: Enzyme Mechanism Ontology (RRID:SCR_010315) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/PIERO

An enzyme ontology that deals with partial reactions (transformations)

Proper citation: Enzyme Reaction Ontology for partial chemical perspectives (RRID:SCR_010316) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/ADW

An ontology for animal life history and natural history characteristics suitable for populations and higher taxonomic entities.

Proper citation: Animal Natural History and Life History Ontology (RRID:SCR_010292) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/COSTART

Ontology for coding, filing, and retrieving post-marketing adverse drug and biologic experience reports. It is organized in body system and pathophysiology hierarchies, as well as a separate fetal/neonatal category of less than 20 terms. COSTART has been superseded by the Medical Dictionary for Regulatory Activities (MedDRA) Terminology. For more information about MedDRA in the Metathesaurus, see the MedDRA source synopsis. COSTART was last updated in the Metathesaurus in 1999.

Proper citation: Coding Symbols for a Thesaurus of Adverse Reaction Terms (RRID:SCR_010294) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/NCBITAXON

Ontology that is an automatic translation of the NCBI taxonomy (a taxonomic classification of living organisms and associated artifacts) database into obo/owl.

Proper citation: NCBITaxon (RRID:SCR_000479) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/HC

An ontology for courtship behavior of the spider Habronattus californicus. A demonstration of ontology construction as a general technique for coding ethograms and other descriptions of behavior into machine understandable forms.

Proper citation: Habronattus Courtship Ontology (RRID:SCR_010334) Copy   

•   Source: SciCrunch Registry