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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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MAKEPED Resource Report Resource Website 1+ mentions |
MAKEPED (RRID:SCR_009162) | MAKEPED | software resource, software application | Software application - part of the LINKAGE auxiliary programs (entry from Genetic Analysis Software) | gene, genetic, genomic, c and pascal, unix, vms, ms-dos, os2 | is listed by: Genetic Analysis Software | nlx_154285 | SCR_009162 | MAKE PEDfiles | 2026-02-13 10:56:20 | 1 | ||||||||
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DOLINK Resource Report Resource Website |
DOLINK (RRID:SCR_009163) | DOLINK | software resource, software application | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 16,2023. Software application that manage genetic data (entry from Genetic Analysis Software) | gene, genetic, genomic, c++, ms-dos, ms-windows | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154286 | SCR_009163 | WDLINK | 2026-02-13 10:56:20 | 0 | |||||||
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DISENTANGLER Resource Report Resource Website 1+ mentions |
DISENTANGLER (RRID:SCR_009161) | DISENTANGLER | software resource, software application | Software application that is a visualization technique for linkage disequilibrium mapping and haplotype analysis of multiple multi-allelic genetic markers. (entry from Genetic Analysis Software) | gene, genetic, genomic, java/jre1.5, bio.tools |
is listed by: Genetic Analysis Software is listed by: bio.tools is listed by: Debian |
nlx_154284, bIotools:disentangler | https://bio.tools/disentangler | SCR_009161 | 2026-02-13 10:56:20 | 4 | ||||||||
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ALOHOMORA Resource Report Resource Website 1+ mentions |
ALOHOMORA (RRID:SCR_009117) | ALOHOMORA | software resource, software application | Software application designed to facilitate genome-wide linkage studies performed with high-density single nucleotide polymorphism (SNP) marker panels such as the Affymetrix GeneChip(R) Human Mapping 10K Array. (entry from Genetic Analysis Software) | gene, genetic, genomic, perl, ms-window, linux, unix, solaris, bio.tools |
is listed by: Genetic Analysis Software is listed by: bio.tools is listed by: Debian |
nlx_154219, biotools:alohomora | https://bio.tools/alohomora | SCR_009117 | 2026-02-13 10:56:19 | 8 | ||||||||
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ALP Resource Report Resource Website |
ALP (RRID:SCR_009118) | ALP | software resource, software application | Microsoft Windows application designed to analyze microsatellite DNA fragments separated on an Automated Laser Fluorescence sequencer. (entry from Genetic Analysis Software) | gene, genetic, genomic, c, ms-windows, (3.1/95/nt) | is listed by: Genetic Analysis Software | nlx_154220 | SCR_009118 | Automated Linkage Preprocessor | 2026-02-13 10:56:19 | 0 | ||||||||
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TUNA Resource Report Resource Website 1+ mentions |
TUNA (RRID:SCR_009112) | TUNA | software resource, software application | THIS RESOURCE IS NO LONGER IN SERVICE, documented September 22, 2016. Free software package for estimating allele frequencies for all the SNPs available in a population reference panel (e.g. HapMap data base) based on genotype data from a subset of markers (e.g. the Illumina HumanHap300 BeadChip SNP set) in a group of subjects (e.g. the cases in a case-control sample)., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | gene, genetic, genomic | is listed by: Genetic Analysis Software | PMID:18057020 | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154211 | SCR_009112 | Testing UNtyped Alleles | 2026-02-13 10:56:19 | 2 | ||||||
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GENEHUNTER-PLUS Resource Report Resource Website 1+ mentions |
GENEHUNTER-PLUS (RRID:SCR_009193) | GENEHUNTER-PLUS | software resource, software application | Software application that is a modification of the GENEHUNTER software package which produces output files containing the null and conditional distributions of the test statistic (in nullprobs.dat and probs.dat, respectively). These files can then be used as input to the ASM program which incorporates the allele sharing modeling for lodscores and likelihood ratio tests as developed by Kong and Cox (1997). (entry from Genetic Analysis Software) | gene, genetic, genomic, c | is listed by: Genetic Analysis Software | nlx_154334 | SCR_009193 | GENEHUNTER-MODSCORE, GENEHUNTER-TWOLOCUS, ALLEGRO, GENEHUNTER, GENEHUNTER-IMPRINTING | 2026-02-13 10:56:20 | 1 | ||||||||
|
GENEFINDER Resource Report Resource Website 100+ mentions |
GENEFINDER (RRID:SCR_009190) | GENEFINDER | software resource, software application | THIS RESOURCE IS NO LONGER IN SERVCE, documented September 21, 2016. Software application that uses GEE method to estimate the location of the susceptibility gene based on the allele-sharing of affected sib pairs for multiple markers. GENEFINDER can further the analysis of GENEHUNTER by providing a more accurate gene location estimation and the corresponding confidence interval. | gene, genetic, genomic, c++, ms-windows, ms-dos, unix, solaris | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154330 | SCR_009190 | 2026-02-13 10:56:20 | 174 | ||||||||
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genehunter-imprinting Resource Report Resource Website 1+ mentions |
genehunter-imprinting (RRID:SCR_009104) | GENEHUNTER-TWOLOCUS | software resource, software application | Resource no longer in service. Documented on February 23,2021.Software tool as modification of GENEHUNTER software package . Allows for parametric multi-marker linkage analysis of dichotomous traits caused by imprinted genes. By specification of two heterozygote penetrance parameters, paternal and maternal origin of the disease allele can be treated differently in terms of probability of expression of the trait. | gene, genetic, genomic, c, unix, sunos, solaris, osf, hpux, aix, ultrix, linux, ms-windows, bio.tools |
is listed by: Genetic Analysis Software is listed by: Debian is listed by: bio.tools |
DOI:10.1086/302911 | Resource no longer in service. Documented on February 23,2021 | nlx_154199, biotools:genehunter-imprinting | https://bio.tools/genehunter-imprinting | http://www.staff.uni-marburg.de/~strauchk/software.html | SCR_009104 | GENEHUNTER-MODSCORE, GENEHUNTER-PLUS, GENEHUNTER, GENEHUNTER-IMPRINTING | 2026-02-13 10:56:19 | 1 | ||||
|
GEMS Resource Report Resource Website 100+ mentions |
GEMS (RRID:SCR_009188) | GEMS | software resource, software application | THIS RESOURCE IS NO LONGER IN SERVCE, documented September 22, 2016. Software application for fitting Genetic Epidemiology Models by running stochastic simulation in relation to disease dynamics. | gene, genetic, genomic, unix, (dec-alpha), linux | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154327 | http://statgen.genomecenter.howard.edu/gems.htm | SCR_009188 | Genetic Epidemiology ModelS | 2026-02-13 10:56:20 | 463 | ||||||
|
GENECOUNTING Resource Report Resource Website 10+ mentions |
GENECOUNTING (RRID:SCR_009189) | GENECOUNTING | software resource, software application | THIS RESOURCE IS NO LONGER IN SERVCE, documented September 22, 2016. Software application for gene-counting for haplotype analysis with permutation tests for global association and specific haplotypes, accounting for missing data. | gene, genetic, genomic, c, ms-windows, unix, solaris, linux | is listed by: Genetic Analysis Software | PMID:12490459 | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154329 | http://www.mrc-epid.cam.ac.uk/Personal/jinghua.zhao/software/ | SCR_009189 | 2026-02-13 10:56:20 | 12 | ||||||
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GCHAP Resource Report Resource Website 1+ mentions |
GCHAP (RRID:SCR_009186) | GCHAP | software resource, software application | THIS RESOURCE IS NO LONGER IN SERVCE, documented September 22, 2016. Software application that finds maximum likelihood estimates of haplotype frequencies from a sample of genotyped individuals. By excluding haplotypes with zero MLE at an early stage, this implementation uses many orders of magnitude less space and time than naive implementations. A second program, ApproxGCHap, is provided to give alternate estimates for data sets with large numbers of loci or large amounts of missing genotypes. | gene, genetic, genomic, java | is listed by: Genetic Analysis Software | PMID:14555636 | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154325 | SCR_009186 | Gene Counting method for HAPlotype analysis. GENEPI.JAR | 2026-02-13 10:56:20 | 7 | ||||||
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GAP Resource Report Resource Website |
GAP (RRID:SCR_009183) | GAP | software resource, software application | THIS RESOURCE IS NO LONGER IN SERVCE, documented September 21, 2016. Software package for the management and analysis of pedigree data. it offers: 1. Powerful database management tools, specifically designed for family data; 2. Automatic pedigree drawing; 3. Segregation and linkage analysis, based on traditional maximum likelihood methods and newer, more powerful, Monte Carlo methods that can model both genetic and environmental factors. (entry from Genetic Analysis Software) | gene, genetic, genomic, c++, ms-windows, (3.1/95/nt), unix, solaris | is listed by: Genetic Analysis Software | nlx_154321 | SCR_009183 | genetic analysis package | 2026-02-13 10:56:20 | 0 | ||||||||
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BQTL Resource Report Resource Website 1+ mentions |
BQTL (RRID:SCR_009137) | BQTL | software resource, software application | Software application for the mapping of genetic traits from line crosses and recombinant inbred lines. It performs (1) maximum likelihood estimation of multi-gene models; (2) Bayesian estimation of multi-gene models via Laplace Approximations; and (3) interval mapping and composite interval mapping of genetic loci (entry from Genetic Analysis Software) | gene, genetic, genomic, s, c, fortran, the software is engineered to work in conjunction with r., unix, ms-windows, macos | is listed by: Genetic Analysis Software | nlx_154252 | http://hacuna.ucsd.edu/bqtl/ | SCR_009137 | Bayesian Quantitative Trait Locus mapping | 2026-02-13 10:56:19 | 1 | |||||||
|
DNABASER Resource Report Resource Website 10+ mentions |
DNABASER (RRID:SCR_009138) | DNABASER | software resource, software application | Software tool for manual and automatic DNA sequence assembly, DNA sequence analysis, automatic sample processing, contig editing, metadata integration, file format conversion and mutation detection. (entry from Genetic Analysis Software), THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | gene, genetic, genomic | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154256 | SCR_009138 | 2026-02-13 10:56:19 | 45 | ||||||||
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BPPH Resource Report Resource Website |
BPPH (RRID:SCR_009136) | BPPH | software resource, software application | Software application for inferring haplotypes from genotypes to determine if there are resulting haplotypes that fit a tree model (i.e. a perfect phylogeny, a coalescent). In population genetic terms, BPPH determines whether a set of SNP genotypes can be explained by haplotype pairs that could have evolved on a coalescent under the no-recombination, infinite sites model. (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | nlx_154251 | SCR_009136 | Berkeley method for Perfect Phylogeney Haplotyping | 2026-02-13 10:56:19 | 0 | ||||||||
|
BLOCK Resource Report Resource Website 100+ mentions |
BLOCK (RRID:SCR_009133) | BLOCK | software resource, software application | THIS RESOURCE IS NO LONGER IN SERVCE, documented September 22, 2016. Software application that performs general pedigree analysis on a general pedigree with any number of loops. It also allows users to perform two-point linkage analysis on a general pedigree with an arbitrary number of alleles., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | gene, genetic, genomic, ms-dos, linux, unix, solaris, irix 64, aix 3.2.5, dec alpha | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154247 | SCR_009133 | Blocking Gibbs sampler for pedigree analysis | 2026-02-13 10:56:19 | 134 | |||||||
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QUTIE Resource Report Resource Website 1+ mentions |
QUTIE (RRID:SCR_009098) | QUTIE | software resource, software application | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 16,2023. Software application for enabling the analysis of rare variants in large-scale case control and quantitative trait association studies. CCRaVAT (Case-Control Rare Variant Analysis Tool) and QuTie (Quantitative Trait) are software packages that enable efficient large-scale analysis of rare variants across specific regions or genome-wide. These programs implement a rare variant super-locus or collapsing method that investigates the accumulation of rare variant alleles in either a case-control or quantitative trait study design. (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154191 | SCR_009098 | Case-Control RAre Variant Analysis Tool CCRAVAT | 2026-02-13 10:56:19 | 1 | |||||||
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BLADE Resource Report Resource Website 100+ mentions |
BLADE (RRID:SCR_009132) | BLADE | software resource, software application | Software application (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | nlx_154246 | SCR_009132 | Bayesian LinkAge DisEquilibrium mapping | 2026-02-13 10:56:19 | 113 | ||||||||
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STEPC Resource Report Resource Website |
STEPC (RRID:SCR_009096) | STEPC | software resource, software application | THIS RESOURCE IS NO LONGER IN SERVCE, documented September 6, 2016. Software application (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154114 | SCR_009096 | STatistical Explanation for Positional Cloning | 2026-02-13 10:56:19 | 0 |
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