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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
An easy-to-use, highly customizable genome browser you can use to visualize and explore genomic data and annotations, including RNA-Seq, ChIP-Seq, tiling array data, and more.
Proper citation: IGB (RRID:SCR_011792) Copy
http://www.broadinstitute.org/igv/
A high-performance visualization tool for interactive exploration of large, integrated genomic datasets.
Proper citation: Integrative Genomics Viewer (RRID:SCR_011793) Copy
http://www.ncbi.nlm.nih.gov/tools/gbench/
An integrated application for viewing and analyzing sequence data.
Proper citation: NCBI Genome Workbench (RRID:SCR_011794) Copy
https://code.google.com/p/ngsplot/
A software program that allows you to easily visualize your next-generation sequencing (NGS) samples at functional genomic regions.
Proper citation: ngs.plot (RRID:SCR_011795) Copy
A center of biomedical research with scientists and physicians working together at the nexus of basic science and clinical research related to oncological diseases. They also pursue to make contributions to the development of new and better therapies for the treatment of cancer. * Scientific practice into the clinic for the benefit of oncology patients * Scientific research excellence in the areas of basic, translational and clinical research * Scientific cooperation among national and international oncology research institutions * Promotion of all oncology research-related activities, thereby contributing towards improving the quality of life of people
Proper citation: Vall d'Hebron Institute of Oncology; Barcelona; Spain (RRID:SCR_011755) Copy
Private research university in Nashville, Tennessee.
Proper citation: Vanderbilt University; Tennessee; USA (RRID:SCR_011756) Copy
https://medschool.vanderbilt.edu/
Vanderbilt University School of Medicine trains leaders in medicine by providing the best faculty and physicians in the best learning environment for the best students in the world. We are known for our personal attention and our customized medical education. Our research program is the fastest growing in the U.S. But our ranking among the top medical schools comes not just from an innovative curriculum and state-of-the-art facilities. It comes from our commitment to people.
Proper citation: Vanderbilt University School of Medicine; Tennessee; USA (RRID:SCR_011757) Copy
http://www.cs.utah.edu/~miriah/mizbee/Overview.html
A multiscale synteny browser for exploring conservation relationships in comparative genomics data.
Proper citation: MizBee (RRID:SCR_011804) Copy
http://pipmaker.bx.psu.edu/pipmaker/
PipMaker computes alignments of similar regions in two DNA sequences. Moreover, MultiPipMaker can be requested to compute a true multiple alignment of the input sequences and return a nucleotide-level view of the results.
Proper citation: PipMaker and MultiPipMaker (RRID:SCR_011806) Copy
A generic sequence comparison tool for visualizing genome alignments both within and between species.
Proper citation: SynBrowse (RRID:SCR_011807) Copy
Swedish agency whose mission is to promote sustainable growth by improving the conditions for innovation, as well as funding needs-driven research. They promote collaborations between companies, universities, research institutes and the public sector by stimulating a greater use of research, by making long-term investment in strong research and innovation environments and by developing catalytic meeting places. Their activities also focus on strengthening international cooperation.
Proper citation: VINNOVA (RRID:SCR_011765) Copy
State supported college of two states, Virginia and Maryland, filling the need for veterinary medicine education in both states. Students from both states are considered "in-state" students for admissions purposes.
Proper citation: Virginia-Maryland Regional College of Veterinary Medicine; Virginia; USA (RRID:SCR_011766) Copy
Medical research institute in Australia that researches and develops treatments for cancer, infectious diseases and chronic inflammatory diseases.
Proper citation: Walter and Eliza Hall Institute of Medical Research; Victoria; Australia (RRID:SCR_011773) Copy
Public research university in Columbia, South Carolina. It has seven satellite campuses throughout the state.
Proper citation: University of South Carolina; South Carolina; USA (RRID:SCR_011699) Copy
University of Washington is public research university in Seattle, Washington. Has university campuses in Seattle, Tacoma and Bothell, academic medical center and professional and continuing education programs.
Proper citation: University of Washington; Seattle; USA (RRID:SCR_011749) Copy
The university of Virginia opened in 1819.
Proper citation: University of Virginia; Virginia; USA (RRID:SCR_011743) Copy
http://code.google.com/p/condetri/
Software tool as content dependent read trimmer for Illumina data. Content dependent read trimming software for Illumina/Solexa sequencing data.
Proper citation: ConDeTri (RRID:SCR_011838) Copy
http://www.cbcb.umd.edu/software/quake/
A software package to correct substitution sequencing errors in experiments with deep coverage (e.g. >15X), specifically intended for Illumina sequencing reads.
Proper citation: Quake (RRID:SCR_011839) Copy
Public research university in San Antonio, Texas.
Proper citation: University of Texas at San Antonio; Texas; USA (RRID:SCR_011719) Copy
Software providing a framework for collecting, storing, and accessing data produced by a wide variety of experiments.
Proper citation: SBEAMS (RRID:SCR_011830) Copy
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