Searching the RRID Resource Information Network
Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.
SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Cassandras Tears Resource Report Resource Website |
Cassandras Tears (RRID:SCR_005229) | Cassandras Tears | data or information resource, narrative resource, blog | Science, Technology, Education, Government, and anti-woo. Cassandra had the gift of seeing the future, but the curse of having no one believe her. | science, technology, education, government, astronomy, atheism, biology, chemistry, climate, computer tech, creationism, culture, environment, evolution, medicine, origins of life, paleontology, philosophy, physics, religion, renewable energy, society |
is used by: NIF Data Federation is used by: Integrated Blogs has parent organization: WordPress |
nlx_144234 | SCR_005229 | Cassandra''s Tears | 2026-02-14 02:05:55 | 0 | ||||||||
|
Sciblogs Resource Report Resource Website |
Sciblogs (RRID:SCR_005219) | Sciblogs | data or information resource, narrative resource, blog | Sciblogs brings together the best science bloggers in the country (New Zealand) on one website, creating a hub for scientific analysis and discussion and facilitating reader interaction. The website is for scientists who want to reach out to a general audience to explain their science and how it relates to society. Some Sciblog contributors spend most of their time in the lab or buried in research. Others are authors or entrepreneurs. All of them know what they are talking about and have an interest in engaging in discussion on the big science-related issues facing society. Over time more bloggers will be added to the Sciblogs roster. If you would like to inquire about hosting a blog on Sciblogs contact us. You can easily keep an eye on new Sciblogs posts by subscribing via RSS or email or by following our Twitter feed. Alternatively, there is a Facebook page as well as a Facebook group feel free to join in! Categories: * Science * Agriculture * Technology * Health and Medicine * Environment and Ecology * Science and Society | science, technology, new zealand, clinical health, climate change, clinical, health, agriculture, society, medicine, environment, ecology |
is used by: NIF Data Federation is used by: Integrated Blogs |
Advertising revenue ; AMP Scholarship grant |
Content is property of author and Science Media Centre. Permission for use required or under the terms of fair use of copyright or Creative Commons licensing (indicated prominently on each blog adopting it.) | nlx_144223 | SCR_005219 | SciBlogs.co.nz | 2026-02-14 02:05:55 | 0 | ||||||
|
EU Clinical Trials Register Resource Report Resource Website 100+ mentions |
EU Clinical Trials Register (RRID:SCR_005956) | data or information resource, database | Database of European clinical trials containing information on interventional clinical trials on medicines. The information available dates from 1 May 2004 when national medicine regulatory authorities began populating the EudraCT database, the application that is used by national medicine regulatory authorities to enter clinical trial data. The EU Clinical Trials Register website launched on 22 March 2011 enables users to search for information which has been included in the EudraCT database. Users are able to: * view the description of a phase II-IV adult clinical trial where the investigator sites are in European Union member states and the European Economic Area; * view the description of any pediatric clinical trial with investigator sites in the European Union and any trials which form part of a pediatric investigation plan (PIP) including those where the investigator sites are outside the European Union. * download up to 20 results (per request) in a text file (.txt). The details in the clinical trial description include: * the design of the trial; * the sponsor; * the investigational medicine (trade name or active substance identification); * the therapeutic areas; * the status (authorized, ongoing, complete). | clinical trial, clinical, drug, pediatric, adult human, child, medicine, intervention, FASEB list |
is used by: NIF Data Federation is used by: Integrated Clinical Trials has parent organization: European Medicines Agency |
Public | nlx_151313 | SCR_005956 | Clinicaltrialsregister.eu, European Union Clinical Trials Register, clinical trials register | 2026-02-14 02:06:31 | 428 | ||||||||
|
Mouse Genome Informatics (MGI) Resource Report Resource Website 1000+ mentions |
Mouse Genome Informatics (MGI) (RRID:SCR_006460) | MGI | data or information resource, database | International database for laboratory mouse. Data offered by The Jackson Laboratory includes information on integrated genetic, genomic, and biological data. MGI creates and maintains integrated representation of mouse genetic, genomic, expression, and phenotype data and develops reference data set and consensus data views, synthesizes comparative genomic data between mouse and other mammals, maintains set of links and collaborations with other bioinformatics resources, develops and supports analysis and data submission tools, and provides technical support for database users. Projects contributing to this resource are: Mouse Genome Database (MGD) Project, Gene Expression Database (GXD) Project, Mouse Tumor Biology (MTB) Database Project, Gene Ontology (GO) Project at MGI, and MouseCyc Project at MGI. | RIN, Resource Information Network, molecular neuroanatomy resource, human health, human disease, animal model, gene expression, phenotype, genotype, gene, pathway, orthology, tumor, strain, single nucleotide polymorphism, recombinase, function, blast, image, pathology, model, data analysis service, genome, genetics, gold standard, RRID Community Authority |
uses: InterMOD is used by: NIF Data Federation is used by: Resource Identification Portal is used by: PhenoGO is used by: Integrated Animals is used by: Cytokine Registry is used by: NIH Heal Project is recommended by: Resource Identification Portal is recommended by: NIDDK Information Network (dkNET) is recommended by: National Library of Medicine is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases is listed by: 3DVC is listed by: re3data.org is listed by: OMICtools is listed by: NIH Data Sharing Repositories is listed by: InterMOD is listed by: Resource Information Network is affiliated with: InterMOD is related to: MONARCH Initiative is related to: MouseCyc is related to: AmiGO is related to: Gene Expression Database is related to: Bgee: dataBase for Gene Expression Evolution is related to: HomoloGene is related to: Rat Gene Symbol Tracker is related to: Enhancer Trap Line Browser is related to: Integrated Brain Gene Expression is related to: MalaCards is related to: Gene Ontology is related to: BioMart Project is related to: NIH Data Sharing Repositories is related to: RIKEN integrated database of mammals is related to: JAX Neuroscience Mutagenesis Facility is related to: PhenoGO is related to: International Mouse Strain Resource is related to: Mouse Genome Database is related to: Mouse Tumor Biology Database has parent organization: Jackson Laboratory is parent organization of: Anatomy of the Laboratory Mouse is parent organization of: Mouse Genome Informatics Transgenes is parent organization of: Federation of International Mouse Resources is parent organization of: MGI GO Browser is parent organization of: Recombinase (cre) Activity is parent organization of: Mouse Genome Informatics: The Mouse Gene Expression Information Resource Project is parent organization of: Deltagen and Lexicon Knockout Mice and Phenotypic Data Resource is parent organization of: MGI strains is parent organization of: MPO is parent organization of: Phenotypes and Mutant Alleles is parent organization of: Human Mouse Disease Connection is parent organization of: Functional Annotation is parent organization of: Strains, SNPs and Polymorphisms is parent organization of: Vertebrate Homology is parent organization of: Batch Data and Analysis Tool is parent organization of: Nomenclature |
NHGRI HG000330; NHGRI HG002273; NICHD HD033745; NCI CA089713 |
PMID:19274630 PMID:18428715 |
Free, Freely available | nif-0000-00096, OMICS_01656, r3d100010266 | http://www.informatics.jax.org/batch http://www.informatics.jax.org/submit.shtml http://www.informatics.jax.org/expression.shtml https://doi.org/10.17616/R35P54 |
SCR_006460 | , MGI, Mouse Genome Informatics | 2026-02-14 02:05:55 | 1119 | ||||
|
Naturally Selected Resource Report Resource Website |
Naturally Selected (RRID:SCR_006572) | Naturally Selected | data or information resource, narrative resource, blog | A blog presented by Faculty of 1000 highlighting and linking to the latest, greatest research recommended by F1000. Contributors include F1000 staff, freelance journalists, and scientists. We encourage readers to participate in the conversation via email to suggest topics and contribute guest posts. | science, scientist, research, biology, medicine |
is used by: NIF Data Federation is used by: Integrated Blogs has parent organization: F1000: Faculty of 1000 Post-Publication Peer Review |
nlx_144236 | SCR_006572 | 2026-02-14 02:06:26 | 0 | |||||||||
|
Clinical Genomic Database Resource Report Resource Website 1+ mentions |
Clinical Genomic Database (RRID:SCR_006427) | CGD | data or information resource, database | Manually curated database of all conditions with known genetic causes, focusing on medically significant genetic data with available interventions. Includes gene symbol, conditions, allelic conditions, inheritance, age in which interventions are indicated, clinical categorization, and general description of interventions/rationale. Contents are intended to describe types of interventions that might be considered. Includes only single gene alterations and does not include genetic associations or susceptibility factors related to more complex diseases. | genomic sequencing, genome, clinical, pediatric, adult human, young human, genomic medicine, whole-genome sequencing, gene, organ system, intervention, gene symbol, condition, allelic condition, clinical categorization, manifestation, inheritance, age group, genetic variant, pathogenic mutation |
is used by: NIF Data Federation has parent organization: National Human Genome Research Institute |
NHGRI | PMID:23696674 | Free, Freely available | nlx_152872, r3d100012332 | https://doi.org/10.17616/R31D3C | SCR_006427 | Clinical Genomics Database | 2026-02-14 02:05:55 | 9 | ||||
|
GeneDB Pfalciparum Resource Report Resource Website 1+ mentions |
GeneDB Pfalciparum (RRID:SCR_006567) | GeneDB_Pfalciparum, GeneDB Pfalciparum, GeneDB P. falciparum | data or information resource, database | Database of the most recent sequence updates and annotations for the P. falciparum genome. New annotations are constantly being added to keep up with published manuscripts and feedback from the Plasmodium research community. You may search by Protein Length, Molecular Mass, Gene Type, Date, Location, Protein Targeting, Transmembrane Helices, Product, GO, EC, Pfam ID, Curation and Comments, and Dbxrefs. BLAST and other tools are available. The P. falciparum 3D7 nuclear genome is 23.3 Mb in size, with a karyotype of 14 chromosomes. The G+C content is approximately 19%. The P. falciparum genome is undergoing re-annotation. This process started in October 2007 with a weeklong workshop co-organized by staff from the Wellcome Trust Sanger Intistute and the EuPathDB team. Ongoing curation and sequence checking is being carried out by the Pathogen Genomics group. Plasmodium falciparum is the most deadly of the five Plasmodium species that cause human malaria. Malaria has a massive impact on human health; it is the worlds second biggest killer after tuberculosis. Around 300 million clinical cases occur each year resulting in between 1.5 - 2.7 million deaths annually, the majority in sub-saharan Africa. It is estimated that 3,000 children under the age of five years fall victim to malaria each day. Around 40% of the worlds population are at risk. In collaboration with EuPathDB, genomic sequence data and annotations are regularly deposited on PlasmoDB where they can be integrated with other datasets and queried using customized queries. |
is used by: NIF Data Federation is related to: AmiGO is related to: PlasmoDB has parent organization: GeneDB |
Wellcome Trust | PMID:12368864 | nlx_13809 | SCR_006567 | Plasmodium falciparum homepage on GeneDB, Plasmodium falciparum 3D7 on GeneDB | 2026-02-14 02:05:56 | 6 | |||||||
|
OMIA - Online Mendelian Inheritance in Animals Resource Report Resource Website 10+ mentions |
OMIA - Online Mendelian Inheritance in Animals (RRID:SCR_006436) | OMIA | data or information resource, database | Describes phenotype relationships with between breeds and genes. Catalogue/compendium of inherited disorders, other (single-locus) traits, and genes in 245 animal species. Database of genes, inherited disorders and traits in animal species other than human, mouse, and rats. Database contains textual information and references, as well as links to relevant records from OMIM, PubMed and Gene. | gene, inherited disorder, trait, disorder, genetic disorder, animal model, human disorder, homologue, phenotype, comparative biology, genotype, gold standard, FASEB list |
is used by: NIF Data Federation is related to: OMIM is related to: Ensembl Variation is related to: NCBI has parent organization: University of Sydney; Sydney; Australia has parent organization: NCBI |
Genetic disorder | H.G. Slater Foundation ; Australian Commonwealth ; International Livestock Centre for Africa ; Food and Agriculture Organization of the United Nations ; American Humane Association |
PMID:16381939 PMID:12520001 PMID:9638822 |
Free, Acknowledgement requested, The community can contribute to this resource, Non-commercial, Commercial with permission, Copyrighted | nif-0000-03215, r3d100010772 | https://doi.org/10.17616/R3VW5D | SCR_006436 | Online Mendelian Inheritance in Animals | 2026-02-14 02:06:34 | 39 | |||
|
International Mouse Phenotyping Consortium (IMPC) Resource Report Resource Website 1000+ mentions |
International Mouse Phenotyping Consortium (IMPC) (RRID:SCR_006158) | IKMC, IMPC | biomaterial supply resource, material resource | Center that produces knockout mice and carries out high-throughput phenotyping of each line in order to determine function of every gene in mouse genome. These mice will be preserved in repositories and made available to scientific community representing valuable resource for basic scientific research as well as generating new models for human diseases. | phenotype, phenotyping, gene, knockout mouse, knockout, genome, function, gene function, mouse model, mutation, embryonic stem cell, genotype, disease, anatomy, procedure, image, experimental protocol, annotation, genotype-phenotype, FASEB list |
uses: LAMA is used by: NIF Data Federation is recommended by: NIDDK Information Network (dkNET) lists: VPV is listed by: One Mind Biospecimen Bank Listing is listed by: NIDDK Information Network (dkNET) is affiliated with: iMITS is related to: HARP is related to: KOMP2 is related to: Knockout Mouse Project Repository at JAX is related to: TheBehaviourForum.org is parent organization of: Impress provides: Knockout Mouse Project Repository works with: GenTaR |
NIH Office of the Director UM1 OD023222 | PMID:27626380 PMID:24652767 PMID:24197666 PMID:25127743 PMID:25343444 PMID:24642684 PMID:21677750 PMID:22968824 PMID:22940749 PMID:22991088 PMID:25992600 PMID:22566555 PMID:23519032 PMID:22211970 PMID:24194600 PMID:26147094 PMID:24634472 PMID:24932005 PMID:25093073 PMID:24046361 PMID:24033988 PMID:23315689 PMID:22926223 PMID:21185382 PMID:21737429 PMID:19933761 PMID:19689210 PMID:17905814 PMID:17218247 PMID:16933996 PMID:16254554 PMID:15908916 PMID:15340423 PMID:15340424 PMID:28650954 PMID:28650483 PMID:29026089 PMID:29348434 PMID:29352221 PMID:29396915 PMID:29626206 PMID:22566555 |
Free, Freely available | nlx_151660 | https://www.mousephenotype.org/data/documentation/data-access | SCR_006158 | KOMP, KOMP-CSD, KOMP-Regeneron, IMPC - International Mouse Phenotyping Consortium, International Mouse Phenotyping Consortium, IMPC, International Mouse Phenotyping Consortium (IMPC), EUCOMM, IKMC | 2026-02-14 02:06:39 | 2449 | ||||
|
goCognitive Resource Report Resource Website |
goCognitive (RRID:SCR_006154) | goCognitive | material resource, assessment test provider | Free access to materials for students, educators, and researchers in cognitive psychology and cognitive neuroscience. Currently there are about a dozen demonstrations and more than 30 videos that were produced over the last two years. The basic philosophy of goCognitive rests on the assumption that easy and free access to high-quality content will improve the learning experience of students and will enable more students to enjoy the field of cognitive psychology and cognitive neuroscience. There are a few parts of goCognitive that are only available to registered users who have provided their email address, but all of the online demonstrations and videos are accessible to the everyone. Both new demonstrations and new video interviews will continually be added to the site. Manuals for each of the demonstration are being created and available as pdf files for download. Most of the demonstrations are pretty straightforward - but in some cases, especially if you would like to collect data - it might be a good idea to look over the manual. There are different ways in which you can get involved and contribute to the site. Your involvement can range from sending us feedback about the demonstrations and videos, suggestions for new materials, or the simple submission of corrections, to the creation or publication of demonstrations and videos that meet our criteria. Down the road we will make the submission process easier, but for now please contact swerner (at) uidaho dot edu for more information. NSF student grant Undergraduate students can apply through goCognitive for an $1,100 grant to co-produce a new video interview with a leading researcher in the field of cognitive neuroscience. The funding has been provided by the National Science Foundation. | educational tool, education, cognitive neuroscience, interview, demonstration, cognitive psychology, manual, memory, working memory, language processing, neuroscience, long-term memory, linguistics, attention, synesthesia, visual perception, auditory processing, blindspot, change blindness, change detection, declarative memory, dichotic listening, student, educator, researcher, quiz |
is used by: NIF Data Federation is used by: Integrated Videos has parent organization: University of Idaho; Idaho; USA |
Association for Psychological Science ; University of Idaho; Idaho; USA ; NSF ; State of Idaho Board of Education |
Free, A few parts are only available to registered users, The community can contribute to this resource | nlx_151647 | SCR_006154 | GoCognitive - Educational tools for cognitive neuroscience, Go Cognitive | 2026-02-14 02:07:08 | 0 | ||||||
|
Hays Resource Report Resource Website 50+ mentions |
Hays (RRID:SCR_008781) | Hays | commercial organization, job resource | UK and Australia scientific job board. | recruit, candidate, employment, career, united kingdom, australia, worldwide, job seeker, employer |
is used by: NIF Data Federation is related to: Integrated Jobs |
nlx_144166 | SCR_008781 | Hays: Recruiting experts worldwide | 2026-02-14 02:07:05 | 73 | ||||||||
|
Nuclear Receptor Signaling Atlas Resource Report Resource Website 100+ mentions |
Nuclear Receptor Signaling Atlas (RRID:SCR_003287) | NURSA | biomaterial supply resource, material resource | THIS RESOURCE IS NO LONGER IN SERVICE.Documented on February 25, 2022.Software tool as knowledge environment resource that accrues, develops, and communicates information that advances understanding of structure, function, and role in disease of nuclear receptors (NRs) and coregulators. It specifically seeks to elucidate roles played by NRs and coregulators in metabolism and development of metabolic disorders. Includes large validated data sets, access to reagents, new findings, library of annotated prior publications in field, and journal covering reviews and techniques.As of March 20, 2020, NURSA is succeeded by the Signaling Pathways Project (SPP). | nuclear receptor, coregulator, metabolism, metabolic disorder, type 2 diabetes, obesity, osteoporosis, lipid dysregulation, cardiovascular disease, oncology, regenerative medicine, environmental agent, genomics, proteomics, reagent, ligand, microarray, gene expression, data set, data analysis service, nuclear receptor signaling, signaling, high through put screening, receptor, ligand, journal, molecule, affinity purification, q-pcr, chip-chip, animal model, antibody, cell line, primer, transcriptomine, clinical trial, disease, drug, data set |
is used by: NIF Data Federation is used by: NIDDK Information Network (dkNET) is recommended by: National Library of Medicine lists: NURSA Transcriptomine lists: STRING lists: Nuclear Receptor Cistrome is listed by: NIH Data Sharing Repositories is listed by: NIDDK Research Resources is listed by: NIDDK Information Network (dkNET) is related to: dkCOIN is related to: Integrated Manually Extracted Annotation has parent organization: Baylor College of Medicine; Houston; Texas |
Metabolic disorder, Type 2 diabetes mellitus, Obesity, Osteoporosis, Lipid dysregulation, Cardiovascular disease, Diabetes, Cancer | NHLBI ; NIEHS ; NICHD ; NIDDK DK097748 |
DOI:10.1101/401729 | Free, Freely available | nif-0000-03208 | https://dknet.org/about/NURSA_Archive | http://www.nursa.org | SCR_003287 | NURSA - Nuclear Receptor Signaling Atlas, NURSA - The Nuclear Receptor Signaling Atlas | 2026-02-14 02:06:56 | 135 | ||
|
DISCO Resource Report Resource Website 100+ mentions |
DISCO (RRID:SCR_004586) | DISCO | software resource, service resource | DISCO is an information integration approach designed to facilitate interoperation among Internet resources. It consists of a set of tools and services that allows resource providers who maintain information to share it with automated systems such as NIF. NIF is then able to harvest the information and keep those sets of information up-to-date. How is this accomplished? By using a series of files and/or scripts which are then placed in the root directory of the resource developer''s resource. (NIF can also host the files on its servers and crawl for changes there.) Once the files of the resource providers are in place, and DISCO is notified, the DISCO server can then recognize and consume the information shared, providing machine understandable information to NIF Integrator Servers (also known as Aggregators) about your resource. What can DISCO do for my resource? * Inform search engines about your resource and keep your NIF Registry resource description up-to-date. * Expose your data (semi-structured datasets or fields within your structured database) through NIF''s Data Federation you choose what data will be shared. * Create links from an NCBI database (e.g., PubMed, Protein, Nucleotide, etc.) to your data records in NIF using Entrez LinkOut. * Advertise your terminology or ontological information. * Share your resource''s news with the NIF community., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | interoperation, sitemap, linkout, news, harvest, aggregate, FASEB list |
is used by: NIF Data Federation has parent organization: Neuroscience Information Framework has parent organization: Yale School of Medicine; Connecticut; USA |
NIH | PMID:20387131 PMID:18975149 |
THIS RESOURCE IS NO LONGER IN SERVICE | nlx_143827 | SCR_004586 | registration and interoperation framework, DISCO: Extensible Web resource DISCOvery | 2026-02-14 02:06:47 | 332 | |||||
|
Gemma Resource Report Resource Website 1000+ mentions |
Gemma (RRID:SCR_008007) | Gemma | data or information resource, database | Resource for reuse, sharing and meta-analysis of expression profiling data. Database and set of tools for meta analysis, reuse and sharing of genomics data. Targeted at analysis of gene expression profiles. Users can search, access and visualize coexpression and differential expression results. | chip, microarray, functional genomics, gene expression, coexpression, differential expression, FASEB list |
is used by: NIF Data Federation is used by: Integrated Data Annotation is listed by: Debian is listed by: SoftCite is related to: Gene Ontology is related to: Gene Expression Omnibus is related to: Phenocarta has parent organization: University of British Columbia; British Columbia; Canada is parent organization of: Neurocarta |
NIGMS GM076990; Canadian Foundation for Innovation ; Michael Smith Foundation for Health Research ; Canadian Institutes for Health Research |
PMID:22782548 | Free, Freely available | nif-0000-08127, r3d100012747 | https://sources.debian.org/src/gemma/ https://doi.org/10.17616/R36R54 https://doi.org/10.17616/R36R54 |
SCR_008007 | 2026-02-14 02:06:41 | 1112 | |||||
|
PolygenicBlog Resource Report Resource Website |
PolygenicBlog (RRID:SCR_008789) | data or information resource, narrative resource, blog | A blog concerning the relationships between genes, risk factors and immunity in Alzheimer's disease, autism, Bipolar disorder, multiple sclerosis, Parkinson's disease, schizophrenia and chronic fatigue. | gene, risk factor, immunity, alzheimer's disease, autism, bipolar disorder, multiple sclerosis, parkinson's disease, schizophrenia, chronic fatigue |
is used by: NIF Data Federation is used by: Integrated Blogs has parent organization: Polygenic Pathways |
Alzheimer's disease, Autism, Bipolar disorder, Multiple sclerosis, Parkinson's disease, Schizophrenia, Chronic fatigue | Public | nlx_144238 | SCR_008789 | Polygenic Blog | 2026-02-14 02:06:36 | 0 | |||||||
|
Discover Magazine Resource Report Resource Website 10+ mentions |
Discover Magazine (RRID:SCR_008787) | Discover | data or information resource, narrative resource, blog | Popular science magazine which includes news and blogs on topics including Health & Medicine, Mind & Brain, Technology, Space, Human origins, Living World, Environment, and Physics & Math. NIF Indexes include: The Brain: DISCOVER blogger, columnist, and contributing editor Carl Zimmer''s monthly column will make your brain happy. Discover Interview: The magazine''s signature in-depth discussion with the leading lights of the world of science Vital Signs: A medical mystery, as written by the doctor involved. | health, medicine, mind, brain, technology, magazine |
is used by: NIF Data Federation is used by: Integrated Blogs is parent organization of: Neuroskeptic is parent organization of: The Loom |
nlx_144214 | SCR_008787 | 2026-02-14 02:06:10 | 15 | |||||||||
|
BioNOT Resource Report Resource Website |
BioNOT (RRID:SCR_008743) | BioNOT | data or information resource, database | Database of negated biomedical sentences in literature consisting of more than 32 million negated sentences. Negated sentences were detected using the algorithm described in - Shashank Agarwal, Hong Yu Biomedical negation scope detection with Conditional Random Fields Journal of the American Medical Informatics Association (JAMIA), 2010; 17:696-701. After entering your query in the search box (for example MeCP2 autism), the search results with the negated sentence and the sentences preceding and following the negated sentences are displayed. A link to the source of the sentence is also provided, which links to the article from which the negated sentence was extracted. BioNOT is no longer updated. Documented 2013. | biomedical, negated sentence, bibliographic |
is used by: NIF Data Federation is related to: Integrated Auto-Extracted Annotation |
PMID:20962133 | nlx_143912 | http://snake.ims.uwm.edu/bionot/index.php?searchterm=mecp2+autism&submit=Search | SCR_008743 | 2026-02-14 02:06:15 | 0 | |||||||
|
Integrated Cell Lines Resource Report Resource Website |
Integrated Cell Lines (RRID:SCR_008994) | data or information resource, database | A virtual database currently indexing available cell lines from: Coriell Cell Repositories, International Mouse Strain Resource (IMSR), ATCC, NIH Human Pluripotent Stem Cell Registry, NIGMS Human Genetic Cell Repository, and Developmental Therapeutics Program. | cell line, cell repository, database, integrated |
is used by: NIF Data Federation is listed by: One Mind Biospecimen Bank Listing is related to: Coriell Cell Repositories is related to: International Mouse Strain Resource is related to: ATCC is related to: NIH Human Pluripotent Stem Cell Registry is related to: NIGMS Human Genetic Cell Repository is related to: Developmental Therapeutics Program has parent organization: Integrated |
Data are licensed by their respective owners. Use and distribution is subject to the Terms of Use by the original resource as well as the, Creative Commons Attribution License | nlx_152524 | https://legacy.neuinfo.org/mynif/search.php?q=*&t=indexable&list=cover&nif=nlx_154697-3 https://neuinfo.org/mynif/search.php?q=*&cf=Biospecimen&t=indexable&nif=nlx_152524-1, https://neuinfo.org/mynif/search.php?q=nlx_152524&t=indexable&nif=nlx_152524-1&b=0&r=20, https://www.neuinfo.org/mynif/search.php?q=*&t=indexable&nif=nlx_152524-1, https://neuinfo.org/mynif/search.php?q=*&t=indexable&list=cover&nif=nlx_154697-3 | SCR_008994 | Integrated Cell Lines View, NIF Integrated Cell Lines View, Integrated CL, NIF Integrated Cell Lines, Neuroscience Information Framework Integrated Cell Lines, NIF Cell Lines, Cell Lines View | 2026-02-14 02:06:16 | 0 | |||||||
|
Allen Mouse Brain Connectivity Atlas Resource Report Resource Website 100+ mentions |
Allen Mouse Brain Connectivity Atlas (RRID:SCR_008848) | ABA Mouse Connectivity | data or information resource, atlas, spatially referenced dataset | Map of neural connections in mouse brain, built on an array of transgenic mice genetically engineered to target specific cell types. In addition to the connectivity data, information about the transgenic mouse lines and genetic tracers is available. Consists of high resolution 2-D projectivity image data that can be viewed side-by-side with the associated reference atlas and other reference datasets. Enables 3-D visualization and spatial/ontological search of connectivity models through a combination of manual and informatics analyses. | brain, connectivity, atlas, neural, projection, mutant, mouse, strain, image, histology, neuroimaging, data |
is used by: NIF Data Federation is related to: Allen Mouse Brain Common Coordinate Framework has parent organization: Allen Institute for Brain Science has parent organization: Allen Brain Atlas |
Allen Institute for Brain Science | Free for academic use, Non-commercial, Acknowledgement required, Commercial use requires permission | nlx_146253 | http://connectivity.brain-map.org/static/brainexplorer | SCR_008848 | Allen Brain Atlas Connectivity Study, Allen Brain Mouse Connectivity, Allen Mouse Connectivity Atlas, Allen Brain Atlas Mouse Connectivity | 2026-02-14 02:06:15 | 186 | |||||
|
Open Source Brain Resource Report Resource Website 10+ mentions |
Open Source Brain (RRID:SCR_001393) | OSB | data repository, storage service resource, data or information resource, service resource, database | A resource for sharing and collaboratively developing computational models of neural systems. While models can be submitted and developed in any format, the use of open standards such as NeuroML and PyNN is encouraged, to ensure transparency, modularity, accessibility and cross simulator portability. OSB will provide advanced facilities to analyze, visualize and transform models in these formats, and to connect researchers interested in models of specific neurons, brain regions and disease states. Research themes include: Basal ganglia modelling, Cerebellar Granule cell modelling, Cerebellar modelling, Hippocampal modelling, Neocortical modelling, Whole brain models. Additional themes are welcome. | model, neuroml, pynn, computational model, neural system, neuron, disease, data analysis service, visualization, 3d explorer, network, ion channel distribution, ion channel, microcircuit |
uses: PyNN uses: NeuroML is used by: NIF Data Federation is listed by: Integrated Models is related to: neuroConstruct is related to: NWB Explorer is related to: Allen Institute for Brain Science has parent organization: University College London; London; United Kingdom |
Wellcome Trust | Free, Freely Available | nlx_152590 | SCR_001393 | OpenSourceBrain | 2026-02-14 02:04:44 | 26 |
Can't find your Tool?
We recommend that you click next to the search bar to check some helpful tips on searches and refine your search firstly. Alternatively, please register your tool with the SciCrunch Registry by adding a little information to a web form, logging in will enable users to create a provisional RRID, but it not required to submit.
Welcome to the RRID Resources search. From here you can search through a compilation of resources used by RRID and see how data is organized within our community.
You are currently on the Community Resources tab looking through categories and sources that RRID has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.
If you have an account on RRID then you can log in from here to get additional features in RRID such as Collections, Saved Searches, and managing Resources.
Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:
If you are logged into RRID you can add data records to your collections to create custom spreadsheets across multiple sources of data.
Here are the facets that you can filter the data by.
If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.
