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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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MRQy Resource Report Resource Website 1+ mentions |
MRQy (RRID:SCR_025779) | data analysis software, software resource, data processing software, software application | Software quality assurance and checking tool for quantitative assessment of magnetic resonance imaging and computed tomography data. Used for quality control of MR imaging data. | quantitative assessment, magnetic resonance imaging, computed tomography, imaging data, | NCI U24CA199374; NCI R01CA202752; NCI R01CA208236; NCI R01CA216579; NCI R01CA220581; NCI 1U01CA239055; NCI 1F31CA216935; NCI 1U01CA248226; NHLBI R01HL15127701A1; NIBIB 1R43EB028736; NCRR 1C06RR12463 |
PMID:33176026 | Free, Available for download, Freely available | SCR_025779 | 2026-02-13 10:59:41 | 1 | |||||||||
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HCP Pipelines Resource Report Resource Website 10+ mentions |
HCP Pipelines (RRID:SCR_026575) | data processing software, software toolkit, software application, image processing software, software resource | Software package as set of tools, primarily shell scripts, for processing multi-modal, high-quality MRI images for the Human Connectome Project. Minimal preprocessing pipelines for structural, functional, and diffusion MRI that were developed by the HCP to accomplish many low level tasks, including spatial artifact/distortion removal, surface generation, cross-modal registration, and alignment to standard space. | Minimal preprocessing pipelines, Human Connectome Project, MRI images processing, MRI images, | NIMH MH091657; NIH Blueprint for Neuroscience Research ; NIMH F30 MH097312; NIMH ROI MH60974; NCRR U24 RR021382; NIBIB R01EB006758; NIA R01AG008122; NINDS R01 NS052585; NINDS R21NS072652; NINDS R01NS070963 |
PMID:23668970 | Free, Available for download, Freely available | https://www.humanconnectome.org/software/hcp-mr-pipelines | SCR_026575 | Human Connectome Project Pipelines | 2026-02-13 10:59:43 | 20 | |||||||
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Nested containment list Resource Report Resource Website |
Nested containment list (RRID:SCR_027849) | NCLS, NCList | software resource, software library, software toolkit | Software library for nested containment list data structure for interval overlap queries, like interval tree. It is a static interval-tree that is fast for both construction and lookups. | nested containment list data structure, interval overlap queries, static interval-tree, construction and lookups, | NCRR U54 RR021813; NSF |
PMID:17234640 | Free, Available for download, Freely available | SCR_027849 | , Nested Containment List (NCList), Nested Containment List | 2026-02-13 10:59:52 | 0 | |||||||
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Resource Center for Medical Ultrasonic Transducer Technology Resource Report Resource Website 1+ mentions |
Resource Center for Medical Ultrasonic Transducer Technology (RRID:SCR_001404) | UTRC | training resource | Biomedical technology research center focusing on the development of very high frequency (above 20 MHz) ultrasonic transducers/arrays for applications in medicine and biology that include ophthalmology, dermatology, vascular surgery, and small animal imaging. The research is pursued simultaneously in three directions: novel piezoelectric materials, very high frequency single element transducers and linear arrays, and finite element modeling and material property measurements. The Center also serves the community through collaborative efforts with investigators having a research interest in high-frequency ultrasound imaging. In addition, it performs the function of training and information dissemination by offering conferences, seminars and specialized courses at the University of Southern California. The Center has set forth a number of goals which define its mission: * Conduct novel research and development of very high frequency (>20MHz) ultrasonic transducers, arrays and imaging applications * Collaborate with other academic institutions, non-profit organizations, and small businesses supported by the NIH to further the development of these high-frequency applications and provide the expertise in transducers necessary for project success * Serve as an educational center for training scientists and engineers interested in ultrasonic transducer technology One of the primary goals of the Center is to provide service to outside investigators and small business. Often an investigator or company has a specific application in mind but is without the expertise to develop the necessary ultrasonic device. Investigators at academic institutions, research institutes, or small businesses supported by NIH grants who have a need for medical ultrasound transducers and are interested in a collaborative effort should contact Dr. Hyung Ham Kim or Dr. K. Kirk Shung. Ultrasound transducers and components can be fabricated either completely by center personnel or in a joint effort with other investigators. In addition, collaborators are encouraged to visit the facility for additional training in fabrication and assembly. | ultrasonic transducer, array, ultrasound, imaging | has parent organization: University of Southern California; Los Angeles; USA | NCRR 1S10RR023653-01 | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_152627 | SCR_001404 | Ultrasonic Transducer Resource Center, USC Resource Center for Medical Ultrasonic Transducer Technology, Resource on Medical Ultrasonic Transducer Technology | 2026-02-07 02:05:37 | 3 | ||||||
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MS-GF+ Resource Report Resource Website 100+ mentions |
MS-GF+ (RRID:SCR_015646) | software resource | Software that performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence database. | protein idenitification, peptide sequence, ms, ms spectrum, proteomic, bio.tools, FASEB list |
is listed by: Debian is listed by: bio.tools has parent organization: Pacific Northwest National Laboratory |
NCRR RR018522; NCRR 1-P41-RR024851; NIAID ; W.R. Wiley Environmental Molecular Science Laboratory |
PMID:25358478 | Free, Available for download, Acknowledgment requested | biotools:ms-gf | https://github.com/sangtaekim/msgfplus https://bio.tools/ms-gf |
SCR_015646 | MSGF+, MSGFPlus | 2026-02-07 02:09:19 | 151 | |||||
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National Biomedical Computation Resource Resource Report Resource Website 10+ mentions |
National Biomedical Computation Resource (RRID:SCR_002656) | NBCR | biomedical technology research center, training resource | Biomedical technology research center that conducts, catalyzes and enables multiscale biomedical research, focusing on four key activities: 1) integrating computational, data and visualization resources in a transparent, advanced grid environment to enable better access to distributed data, computational resources, instruments and people; 2) developing and deploying advanced computational tools for modeling and simulation, data analysis, query and integration, three-dimensional image processing and interactive visualization; 3) delivering and supporting advanced grid/cyberinfrastructure for biomedical researchers; and 4) training a cadre of new researchers to have an interdisciplinary, working knowledge of computational technology relevant to biomedical scientists. NBCR enables biomedical scientists to address the challenge of integrating detailed structural measurements from diverse scales of biological organization that range from molecules to organ systems in order to gain quantitative understanding of biological function and phenotypes. Predictive multi-scale models and their driving biological research problems together address issues in modeling of sub-cellular biophysics, building molecular modeling tools to accelerate discovery, and defining tools for patient-specific multi-scale modeling. NBCR furthers these driving problems by developing tools and models based on rapid advances in mathematics and information technology, incorporating them into NBCR pipelines or problem solving environments, and addressing the inevitable changes in the underlying cyber-infrastructure technologies and continually adapting codes over time. Their technology focus integrates both the biological applications and the underlying support software into reproducible science workflows that can function across a number of physical infrastructures. | computation, molecule, visualization, software, cyberinfrastructure, biomedical, computing, informatics, computational tool, modeling, simulation, data analysis, query, integration, image processing, grid computing, cluster, computing and informatics technology center |
has parent organization: University of California at San Diego; California; USA is parent organization of: MEME Suite - Motif-based sequence analysis tools is parent organization of: Grid Enabled Molecular Science Through Online Networked Environments |
NIGMS GM103426; NCRR P41 RR08605 |
Free, Available for download, Freely available | nif-0000-22270 | SCR_002656 | NBCR - National Biomedical Computation Resource | 2026-02-10 09:54:45 | 15 | ||||||
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National Center for Microscopy and Imaging Research Resource Report Resource Website 100+ mentions |
National Center for Microscopy and Imaging Research (RRID:SCR_002655) | NCMIR | biomedical technology research center, training resource | Biomedical technology research center that develops computer-aided, advanced microscopy for the acquisition of structural and functional data in the dimensional range of 1 nm to 100 um, a range encompassing macromolecules, subcellular structures and cells. Novel specimen-staining methods, imaging instrumentsincluding intermediate high-voltage transmission electron microscopes (IVEMs) and high-speed, large-format laser-scanning light microscopesand computational capabilities are available for addressing mesoscale biological microscopy of proteins and macromolecular complexes in their cellular and tissue environments. These technologies are developed to bridge understanding of biological systems between the gross anatomical and molecular scales and to make these technologies broadly available to biomedical researchers. NCMIR provides expertise, infrastructure, technological development, and an environment in which new information about the 3D ultrastructure of tissues, cells, and macromolecular complexes may be accurately and easily obtained and analyzed. NCMIR fulfills its mission through technology development, collaboration, service, training, and dissemination. It aims to develop preparative methods and analytical approaches to 3D microscopy applicable to neurobiology and cell biology, incorporating equipment and implementing software that expand the analysis of 3D structure. The core research activities in the areas of specimen development, instrument development, and software infrastructures maximize the advantages of higher voltage electron microscopy and correlated light microscopies to make ambitious imaging studies across scales routine, and to facilitate the use of resources by biomedical researchers. NCMIR actively recruits outside users who will not only make use of these resources, but who also will drive technology development and receive training. | microscopy, electron microscopy, electron tomography, 3d imaging, instrumentation, intermediate voltage electron microscopy, light microscopy, specimen preparation, telemicroscopy, image, software, tissue, cell, macromolecular complex, macromolecule, subcellular structure, 3d microscopy, neurobiology, cell biology, 3d structure, imaging technology center |
has parent organization: University of California at San Diego; California; USA is parent organization of: XFido is parent organization of: Xvoxtrace is parent organization of: National Center for Microscopy and Imaging Research: SAGE is parent organization of: Combine RTS2000 is parent organization of: Montage RTS2000 is parent organization of: Manual Align RTS2000 |
NIGMS ; NCRR P41 GM103412 |
Free, Available for download, Freely available | nif-0000-22234, SCR_016627 | SCR_002655 | National Center for Microscopy and Imaging Research | 2026-02-10 09:54:45 | 252 | ||||||
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BioCAT Resource Report Resource Website 500+ mentions |
BioCAT (RRID:SCR_001440) | BioCAT | biomedical technology research center, training resource | Biomedical technology research center and training resource for the study of the structure of partially ordered biological molecules, complexes of biomolecules and cellular structures under conditions similar to those present in living cells and tissues. The goal of research at BioCAT is to determine the detailed structure and mechanism of action of biological systems at the molecular level. The techniques used are X-ray fiber diffraction, X-ray solution scattering and X-ray micro-emission and micro-absorption spectroscopy, with an emphasis on time-resolved studies and the development of novel techniques. | biological system, structure, function, molecule, complex, cellular structure, cell, tissue, x-ray, fiber diffraction, solution scattering, micro-emission, micro-absorption spectroscopy, time-resolved, x-ray micro-imaging, macromolecule, structural biology technology center, photon, microprobe | has parent organization: Argonne National Laboratory | NCRR U41RR008630 | nlx_152666 | http://www.bio.aps.anl.gov/ | SCR_001440 | Biophysics Collaborative Access Team | 2026-02-10 09:54:30 | 898 | ||||||
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National Resource for Quantitative Functional MRI Resource Report Resource Website 1+ mentions |
National Resource for Quantitative Functional MRI (RRID:SCR_006716) | Resource for Quantitative Functional MRI | biomedical technology research center, training resource | Biomedical technology research center that provides expertise for the design of quantitative magnetic resonance imaging (MRI) and spectroscopy (MRS) data acquisition and processing technologies that facilitate the biomedical research of a large community of clinicians and neuroscientists in Maryland and throughout the USA. These methods allow noninvasive assessment of changes in brain anatomy as well as in tissue metabolite levels, physiology, and brain functioning while the brain is changing size during early development and during neurodegeneration, i.e. the changing brain throughout the life span. The Kirby Center has 3 Tesla and 7 Tesla state of the art scanners equipped with parallel imaging (8, 16, and 32-channel receive coils) and multi-transmit capabilities. CIS has an IBM supercomputer that is part of a national supercomputing infrastructure. Resources fall into the following categories: * MRI facilities, image acquisition, and processing * Computing facilities and image analysis * Novel statistical methods for functional brain imaging * Translating laboratory discoveries to patient treatment | quantitative magnetic resonance imaging, magnetic resonance spectroscopy, mri, fmri, function, metabolism, physiology, brain, neurodevelopment, neurodegeneration, image acquisition, image processing, computing, image analysis, statistical method, neuroimaging, development |
has parent organization: Kennedy Krieger Institute has parent organization: Johns Hopkins University; Maryland; USA |
NIBIB P41 EB015909; NCRR P41 RR015241 |
nlx_152634 | http://mri.kennedykrieger.org/nationalresource/index.html | SCR_006716 | Resource for Quantitative Functional Magnetic Resonance Imaging | 2026-02-10 09:55:30 | 1 | ||||||
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National Bio-Organic Biomedical Mass Spectrometry Resource Center Resource Report Resource Website 1+ mentions |
National Bio-Organic Biomedical Mass Spectrometry Resource Center (RRID:SCR_009004) | Mass Spectrometry Facility | biomedical technology research center, training resource | Provides high-performance tandem mass spectrometry and proteomics, including multiplexed quantitative comparative analysis of protein and post-translational modifications, and a suite of tools for the analysis of mass spectrometry proteomics data. It provides both scientific and technical expertise and state-of-the-art high-performance, tandem mass spectrometric instrumentation. The facility also provides a service for small molecule analysis. Significant instrumentation in the facility includes three QSTAR quadrupole orthogonal time of flight instruments, and both an LTQ-Orbitrap platform with electron transfer dissociation (ETD) and an LTQ-FT linear ion trap FT-ICR instrument equipped with the ability to perform electron capture dissociation (ECD). The Center also has a 4700 Proteomic Analyzer MALDI tandem time of flight instrument; as well as a QTRAP 5500 hybrid triple quadrupole linear ion trap instrument; and a Thermo Fisher LTQ Orbitrap Velos. Major research focuses within the Center are the analysis of post-translational modifications, including phosphorylation and O-GlcNAcylation and development of methods for quantitative comparative analysis of protein and post-translational modification levels. The program also continues to develop one of the leading suites of tools for analysis of mass spectrometry proteomics data, Protein Prospector. The current web-based release allows unrestricted searching of MS and MSMS data, as well as the ability to perform comparative quantitative analysis of samples using isotopic-labeling reagents. It is the only freely-available web-based resource that allows this type of analysis. | systems biology technology center, mass spectrometry, proteomics | has parent organization: University of California at San Francisco; California; USA | NCRR ; NIGMS P41GM103481 |
nlx_152680 | SCR_009004 | UCSF Mass Spectrometry Facility | 2026-02-10 09:55:54 | 2 | |||||||
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Wellcome-CTC Mouse Strain SNP Genotype Set Resource Report Resource Website 1+ mentions |
Wellcome-CTC Mouse Strain SNP Genotype Set (RRID:SCR_003216) | Wellcome-CTC Mouse Strain SNP Genotype Set | data or information resource, data set | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on August 19,2025. Data set of genotypes available for 480 strains and 13370 successful SNP assays that are mapped to build34 of the mouse genome, including 107 SNPs that are mapped to random unanchored sequence 13374 SNPs are mapped onto Build 33 of the mouse genome. You can access the data relative to Build 33 or Build 34. | genome, genotype, snp, chromosome, haplotype, haplotype structure, recombinant inbred mouse strain | has parent organization: Wellcome Trust Centre for Human Genetics | Wellcome Trust ; NCRR R24RR015116; NIGMS R01GM072863; NIAAA U01AA014425; NINDS R01NS049445; NIMH P20-MH 62009; NIAAA U24AA13513 |
THIS RESOURCE IS NO LONGER IN SERVICE | nlx_156947 | SCR_003216 | 2026-02-11 10:56:42 | 3 | |||||||
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Resource Discovery System Resource Report Resource Website |
Resource Discovery System (RRID:SCR_005554) | RDS | data or information resource, database | Resource Discovery System is a web-accessible and searchable inventory of biomedical research resources. Powered by the Resource Discovery System (RDS) that includes a standards-based informatics infrastructure * Biositemaps Information Model * Biomedical Resource Ontology Extensions * Web Services distributed web-accessible inventory framework * Biositemap Resource Editor * Resource Discovery System Source code and project documentation to be made available on an open-source basis. Contributing institutions: University of Pittsburgh, University of Michigan, Stanford University, Oregon Health & Science University, University of Texas Houston. Duke University, Emory University, University of California Davis, University of California San Diego, National Institutes of Health, Inventory Resources Working Group Members | registry, web service, source code, biomedical, software resource, material resource, funding resource, service resource, training resource, people resource | has parent organization: Biositemaps | Clinical and Translational Science Awards Consortium ; National Centers for Biomedical Computing ; NCRR 3UL1RR024153-03S1; NCRR 5UL1RR024128-03S1; NCRR 1UL1RR025008-01; NCRR 1UL1RR024146-01; NCRR 1UL1RR024986-01; NCRR 1UL1RR024153-01; NIDA 3U54DA021519-04S1; NHGRI 3U54HG004028-04S |
nlx_144645 | SCR_005554 | 2026-02-11 10:57:10 | 0 | ||||||||
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Recombinase (cre) Activity Resource Report Resource Website 10+ mentions |
Recombinase (cre) Activity (RRID:SCR_006585) | Recombinase Activity | data or information resource, database | Curated data about all recombinase-containing transgenes and knock-ins developed in mice providing a comprehensive resource delineating known activity patterns and allows users to find relevant mouse resources for their studies. | cre, recombinase, transgene, knock-in, allele, expression, activity pattern, mutagenesis, promoter, driver, image, tissue, specificity assay |
is related to: International Mouse Strain Resource is related to: CREATE is related to: JAX Cre Repository is related to: Allen Institute for Brain Science is related to: CRE Driver Network is related to: Pleiades Promoter Project: Genomic Resources Advancing Therapies for Brain Disorders is related to: EUCOMMTOOLS has parent organization: Mouse Genome Informatics (MGI) |
NCRR RR03 2656; NICHD HD062499; European Union HEALTH-F4-2009-223487 |
SCR_017520, nlx_152803 | http://www.creportal.org/ | SCR_006585 | Cre Portal | 2026-02-11 10:57:23 | 21 | ||||||
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Eagle I Resource Report Resource Website 10+ mentions |
Eagle I (RRID:SCR_013153) | eagle-i, eagle i, eaglei | data or information resource, database | Web application to discover resources available at participating networked universities. This distributed platform for creating and sharing semantically rich data is built around semantic web technologies and follows linked open data principles. | ontology, semantic web, rdf, sparql endpoint, linked open data, distributed platform, protocol |
lists: BWH Partners Tissue and Blood Repository lists: MSU Subzero Science and Engineering Research Core Facility lists: OHSU MRI Support Core Laboratory lists: Penn Cell and Developmental Biology Zebrafish Core lists: Penn Clinical Research Computing Unit lists: Penn Community Outreach Using Health System Informatics Core lists: UPR Medical Mycology Laboratory lists: Vanderbilt Bradykinin Core Laboratory lists: BWH Surgical Planning Laboratory lists: Children's Hospital Informatics Program lists: DF/HCC Health Communication Core lists: DF/HCC Specialized Histopathology Services Core lists: Dartmouth College Clinical Pharmacology Shared Resource Core Facility lists: Dartmouth Geospatial Shared Resource lists: Dartmouth Optical Cellular Imaging lists: FAMU Drug Discovery Core Facility lists: FAMU Flow cytometry laboratory lists: HMS NERCE FACSCalibur Flow Cytometer Resource lists: Harvard HSCI iPS Cell Core Facility lists: Harvard NeuroDiscovery Center - Biomarker Study lists: Harvard Partners HealthCare Center for Personalized Genetic Medicine Bioinformatics Core Facility lists: Hunter NMR Spectroscopy Facility lists: JSU Environmental Toxicology Core Lab lists: MGH Center for Morphometric Analysis lists: MGH Vector Development and Production Core Facility lists: MSU Magnetic Resonance Core Laboratory lists: Penn Diabetes Research Center Mouse Phenotyping Physiology and Metabolism Core lists: Penn Research Instrumentation Shop lists: Penn Small Animal Imaging Facility: PET/SPECT/CT Sub-Core lists: Penn Translational Biomarker Core lists: UH Manoa Insect Museum lists: UTEP BSL 3 Laboratory lists: UTSA Engineering Core lists: Vanderbilt Flow Cytometry Core Laboratory lists: Vanderbilt Diabetes Research and Training Center Islet Procurement and Analysis Core lists: Vanderbilt X-Ray Photoelectron Spectroscopy Lab lists: Wyss Institute Imaging Core lists: XULA Materials Research - Shared Instrumentation Facilities lists: Hunter Genomic Facility lists: UPR Analysis Resource Center Confocal Microscopy Core Laboratory lists: UPR Conrado F. Asenjo Library lists: UPR Confocal Microscope Facility lists: UPR Department of Environmental Health Core Laboratory lists: HSPH Trace Metals Laboratory lists: Dartmouth Science Division Electronics Shop lists: Arnold Arboretum of Harvard University: Weld Hill Microscopy Lab lists: Arnold Arboretum of Harvard University: Weld Hill Molecular Lab lists: BWH Cell Culture and Microscopy Core lists: Hunter Nanoscale Analytical Facility lists: Dartmouth SYNERGY Clinical Research Unit lists: Dartmouth Shared Instruments Core Laboratory lists: Vanderbilt Energy Balance Core Laboratory lists: BWH Circulating Tumor Cell Core lists: University of Pennsylvania School of Medicine Penn Diabetes Research Center Pancreatic Islet Cell Biology Core Facility lists: HSPH Molecular Analysis Facility lists: HSPH Organic Chemistry Laboratory lists: Boston Area Diabetes Endocrinology Research Center Metabolic Physiology and Energy Balance Core Facility lists: Harvard FAS Magnetic Resonance Laboratory lists: Howard Flow Cytometry Core lists: CAU CCRTD-Histology Core lists: Penn Laser Confocal Microscope Core lists: Vanderbilt Free Radicals in Medicine Core lists: UAF Alaska Stable Isotope Facility lists: CDU Cancer Research and Training Core Facility lists: CHB Ultrasound lists: Penn Automated Claims and Medical Record Databases lists: Arnold Arboretum of Harvard University: Weld Hill Growth Facilities lists: BIDMC Biomedical Research Informatics Core Laboratory lists: BIDMC CVVR Flow Cytometry Core lists: BIDMC Cardiac Physiology Core Laboratory lists: BIDMC Clinical Research Coordinator Core Laboratory lists: BIDMC DNA Sequencing Core lists: HMS Flow Cytometry Facility lists: Beth Israel Deaconess Medical Center Genomics Proteomics Bioinformatics and Systems Biology Center lists: BIDMC Longwood Small Animal Imaging Core Facility lists: CHB Cellular Imaging Core lists: BIDMC Mass Spectrometry Core lists: BIDMC Multi-Gene Transcriptional Profiling Core lists: BIDMC Preclinical Murine Pharmacogenetics Core lists: BIDMC Real-Time PCR Core lists: BIDMC Transgenic Core Facility lists: BIDMC X-ray Crystallography Core lists: BIDMC eData Collection Core lists: BWH Biostatistics Center lists: BWH CytoGenomics lists: BWH DNA Sequencing Core lists: BWH Flow Cytometry Core Laboratory lists: BWH Sleep and EEG Core lists: BWH Specialty Assay Research Core Laboratory lists: CAU CCRTD-Proteomics lists: BWH Transgenic Core Facility lists: BWH-BRI Antibody Core Facility lists: Broad Genetic Analysis Platform lists: CAU CCRTD-Cell Biology lists: CAU CCRTD-Molecular Biology lists: HSDM Micro CT Core lists: CAU CCRTD-Structural Biology lists: Clark Atlanta University Collaborative Center for Cancer Genomics and Bioinformatics Core Facility lists: CCNY Fluorescence Activated Cell Sorting lists: CCNY Microscopy Facility lists: CCNY RCMI Core Facility lists: CDU AXIS Biomedical Informatics function lists: CDU Exercise Physiology Laboratory lists: CDU Metabolic and Oxidative Stress Core Laboratory lists: CDU Morphometry and Stereology Laboratory lists: CDU Vivarium lists: CHB Advanced Fetal Care Center lists: CHB Cell Sorter Core lists: CHB Transgenic Core Laboratory lists: CHB Cellular Neuroscience Core Laboratory lists: CHB Computational Radiology Laboratory lists: CHB Computed Tomography Core Imaging Facilities lists: CHB Diagnostic Radiology Core lists: CHB Epithelial Cell Biology Core lists: Massachusetts Host-Microbiome Center lists: CHB Magnetic Resonance Imaging lists: CHB Molecular Genetics Core Facility lists: CHB Molecular and Cellular Biochemistry Core lists: CHB Nuclear Medicine and Molecular Imaging lists: CHB Radiopharmaceutical Chemistry Laboratory lists: CHB Small Animal Imaging Core Laboratory lists: CHOP Biostatistics and Data Management Core lists: CHOP CTRC Behavioral Neurosciences Core lists: CHOP CTRC Cardiovascular Imaging Core lists: CHOP CTRC Nutrition Core Nutrition Assessment lists: CHOP CTRC Ophthalmology Core lists: CHOP Clinical Trials Office lists: CHOP Flow Cytometry Core Laboratory lists: CHOP Human Embryonic stem cell/induced pluripotent stem cell Core lists: CHOP Nucleic Acid/Protein Core lists: CHOP Pathology Core Laboratories lists: DF/HCC Biostatistics Core Facility lists: DF/HCC Cancer Pharmacology Core lists: Dana Farber and Harvard Cancer Center Cancer Proteomics Center lists: DF/HCC Cell Manipulation Core Facility lists: DF/HCC Community Practice Research Core lists: DF/HCC High-Throughput Polymorphism Detection Core lists: Dartmouth Department of Physics: Apparatus Shop Core Laboratory lists: DF/HCC Monoclonal Antibody Core lists: DF/HCC Pathology Specimen Locator lists: DF/HCC Rodent Histopathology Core Facility lists: DF/HCC Tissue Microarray and Imaging Core Facility lists: DF/HCC Tumor Imaging Metrics Core Facility lists: DFCI Animal Resources Facility lists: DFCI Biohazard Containment Core Facility lists: DFCI Biospecimen Repository Core Facility lists: DFCI Blais Proteomics Center lists: DFCI Clinical Research Laboratory lists: DFCI Survey and Data Management Core lists: DFCI Flow Cytometry Core Facility lists: DFCI Medical Arts Core Facility lists: DFCI Microarray Core Facility lists: Dana-Farber Cancer Institute Molecular Biology Core Facility lists: DFCI RNA Interference Screening Facility lists: DFCI Shannon McCormack Advanced Molecular Diagnostics Laboratory lists: DartMouse - Speed Congenics lists: Dartmouth-Hitchcock Bioinformatics Shared Resource lists: Dartmouth Biomedical NMR Research Center lists: Dartmouth Biostatistics Shared Resource lists: Dartmouth Cigarette Smoke Exposure Analysis Laboratory lists: Dartmouth Electron Microscope Facility lists: Dartmouth Genomics Shared Resource lists: Dartmouth Institute for Health Policy and Clinical Practice: Data and Analytic Core lists: Dartmouth Media Research Lab Shared Resource lists: Dartmouth Molecular Biology Shared Resource lists: Dartmouth Multi-Photon Imaging lists: Dartmouth SYNERGY: Recruitment and Retention Core lists: Dartmouth SYNERGY: Research Design and Epidemiology Core lists: Dartmouth Pathology Translational Research lists: Dartmouth SYNERGY: Biomedical Informatics Core lists: Dartmouth SYNERGY: Bioregistry lists: Dartmouth SYNERGY: Biostatistics Consultation Core lists: Dartmouth SYNERGY: Ethics Consultation Core lists: Dartmouth Trace Element Analysis Core Facility lists: Dartmouth Translational Research Animal Core lists: FAMU Animal care facility lists: FAMU Molecular biology research laboratory lists: FAMU Neurodegeneration laboratory lists: FAMU Proteomics Laboratory lists: Forsyth Institute Bioinformatics Core Facility lists: Forsyth Biostatistics Core Facility lists: Forsyth Institute Flow Cytometry Core Facility lists: HSPH Inorganic Chemistry Laboratory lists: Forsyth Human Microbe Identification Microarray Core lists: Forsyth Imaging Services Core Facility lists: Forsyth Micro Computed Tomography lists: Forsyth Mineralized Tissue Analysis Core Facility lists: HMS BADERC Flow Cytometry Core lists: HMS Drosophila RNAi Screening Center lists: HMS East Quad NMR Core Facility lists: HMS Genetically Modified NOD Mouse Core Facility lists: HMS Human Sample Procurement Core Facility lists: Harvard Medical School ICCB-Longwood Screening Core Facility lists: HMS Image and Data Analysis Core lists: HMS Microbiology and Immunobiology Biological Chemistry Mass Spec Facility lists: HMS Microfluidics Core Facility lists: HMS Molecular Electron Microscopy Facility lists: HMS NERCE Biomolecule Production Core Laboratory lists: HMS NERCE Confocal Microscope Resource lists: HMS NERCE Live-cell Imaging Core lists: HMS NERCE Microbiology and Animal Resources Core lists: HMS Nikon Imaging Center lists: HMS SBGrid Core lists: HMS Systems Biology Quad Machine Shop lists: HMS Taplin Mass Spectrometry Core Facility lists: HMS West Quad Computing Group lists: HSCI Humanized Neonatal Mouse Center lists: HSCI and BIDMC Flow Cytometry Core Facility lists: HSPH Biological Analysis Service Facility lists: HSPH Biomedical Imaging Facility lists: HSPH Electron Microscopy Facility lists: HSPH Environmental Genomics Service Facility lists: HSPH Environmental Microbiology Lab lists: Harvard School of Public Health Environmental Statistics and Bioinformatics Core Facility lists: HSPH Exposure and Environmental Analysis Service lists: HSPH Flow Cytometry Facility lists: Harvard Bioinformatics Core at Joslin Diabetes Center lists: Harvard CNS Imaging and Analysis Facility lists: Harvard CNS NNIN/C Computational Facility lists: MSU Paleohistology Core Laboratory lists: Harvard CNS Nanofabrication Facility lists: Harvard CNS Nanomaterial Facility lists: Harvard Center for Biological Imaging lists: Harvard Digestive Diseases Center Biomedical CORE B: Microscopy and Histopathology lists: Harvard FAS Bauer Core: Mass Spectrometry and Proteomics Core Laboratory lists: Harvard FAS Center for Brain Science - Electron Microscopy Core Facility lists: Harvard PCMM Flow and Imaging Cytometry Resource lists: Harvard FAS Center for Brain Science - Imaging Core Facility lists: Harvard FAS Center for Brain Science - Neuroengineering Core Facility lists: Harvard FAS Center for Brain Science - Neuroimaging Core Facility lists: Harvard FAS Center for Crystallographic Studies lists: Harvard FAS Research Computing Core lists: Harvard FAS Small Molecule Mass Spectrometry Facility lists: Harvard PCPGM Genotyping Facility lists: Harvard Forsyth Center for Clinical and Translational Research lists: Harvard Gene Therapy Initiative Core lists: Harvard Genome Modification Facility Harvard University lists: Harvard NeuroDiscovery Center - Biostatistics Consultation lists: UCC Common Instrumentation Area and Services lists: Harvard NeuroDiscovery Center - Cell-based Assays Core lists: Harvard PCMM Optical Microscopy Core lists: Harvard PCPGM Biorepository for Medical Discovery lists: Harvard PCPGM Biosample Services Facility lists: Howard Imaging Core Facility: Molecular Imaging Laboratory lists: Harvard PCPGM DNA Sequencing Facility lists: Harvard PCPGM Microarray Facility lists: Harvard Partners Research Computing Core lists: Howard Biobehavioral Core Laboratory lists: Howard Biostatistics Core lists: Howard University Center for Computational Biology and Bioinformatics Core Facility lists: Howard Molecular Genetics Core lists: Penn/CHOP CTRC Informatics Services Core lists: Howard Nanoscale Science and Engineering Facility lists: Howard RCMI Proteomics Facility lists: Hunter Bio-Imaging Facility lists: Hunter Flow Cytometry Facility lists: Hunter X-ray Diffraction Facility lists: Joslin Diabetes Center Advanced Genomics and Genetics Core Facility lists: Joslin Diabetes Center Advanced Microscopy Core Facility lists: Joslin Diabetes Center Animal Physiology Core Facility lists: JDC Computer Resource lists: Joslin Diabetes Center Flow Cytometry Core Facility lists: JDC Genetics Core lists: JDC Media Core lists: Joslin Diabets Center Proteomics Core Facility lists: JDC Specialized Assay Core lists: JSU Analytical Core Laboratory lists: JSU Animal Core Facility lists: MGH Flow Cytometry Core Facility lists: JSU BSU-RCMI Biostatistics Core Laboratory lists: JSU Cellomics and Toxicogenomics Research Core Laboratory lists: Jacksonville State University Center for Bioinformatics and Computational Biology lists: JSU Computational Modeling Core Laboratory lists: JSU Electron Microscope Core Laboratory lists: JSU Molecular Magnetic Resonance Core Laboratory lists: LCRC Proteomics Core Facility lists: LCRC Biospecimen Core lists: JSU Molecular and Cellular Biology Core Laboratory lists: JSU RCMI Translational Research Data Coordinating Center lists: JSU Remote Sensing Core Laboratory lists: JSU Visualization Laboratory lists: MGH CCIB DNA Synthesis Core lists: Jackson Heart Study lists: LCRC Adult Stem Cell Core lists: LCRC Cell Analysis and Immunology Core Facility lists: LCRC Genomics Core Facility lists: LCRC Microarray Core lists: LCRC Morphology and Imaging Core lists: Layton Aging and Alzheimers Disease Center Education Core lists: Layton Alzheimers Disease Center Biomarkers and Genetics Core Lab lists: Layton Alzheimers Disease Center Clinical Core lists: MGH Biostatistics Center lists: MGH CCIB Automation Core lists: MGH CCIB DNA Sequencing Core lists: MGH CHGR Chromosome Substitution Strain Resource lists: MGH CHGR Clinical Genetic Research Facility lists: MGH CHGR DNA and Tissue Culture Resource lists: MGH CHGR Genotyping Resource lists: MGH Cell Tissue and Organ Resource Core lists: MGH Confocal Microscope Core lists: Puerto Rico Clinical and Translational Research Consortium Core Laboratory lists: MGH HSCI-CRM Flow Cytometry Core Facility lists: MGH High Resolution Peripheral Quantitative Computed Tomography Core Facility lists: MGH Mouse Imaging Program lists: MGH Musculoskeletal Imaging Research Core lists: MGH PET Core lists: MGH PMB Microscopy Core lists: MSM DNA Sequencing Laboratory lists: MSM Gene 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and Health Sciences Molecular Biology Core Laboratory lists: UH Manoa Microscopy and Imaging Core lists: Proteomics Center at Childrens Hospital Boston lists: Puerto Rico Clinical and Translational Research Consortium Biostatistic Core Laboratory lists: Puerto Rico Clinical and Translational Research Consortium Research Subject Advocate lists: Ragon Institute Biostatistics Core lists: Ragon Institute Imaging Core Flow Cytometry lists: UAF Animal Quarters Core Laboratory lists: Ragon Institute Imaging Core Microscopy lists: SERI Flow Cytometry Core Facility lists: TSU Biosensor Biomarker and Environmental Toxicology Core Facility lists: TSU Environmental Research and Technology Transfer Center lists: TSU Molecular Biology Core Laboratory lists: Tuskegee Center for Biomedical Research - Digital Imaging lists: Tuskegee Center for Biomedical Research Shared Instrumentation Core lists: Tuskegee University Computational Biology and Bioinformatics - Biomedical Information Management Services lists: UAF Community Engagement and Clinical Support Core lists: UAF DNA Core Laboratory lists: UAF Epidemiology and Biostatistics Core Laboratory lists: UAF Nutrition and Physical Activity Core lists: UAF Optical and Tissue Culture Core lists: UCC Behavioral Testing Facility lists: UCC Biomedical Proteomic Facility lists: UCC Data Management and Statistical Research Support Unit lists: UH Manoa COBRE Molecular and Cellular Immunology Core lists: UCC HIV and Substance of Abuse Laboratory Core lists: UCC Immunocytochemistry Laboratory lists: UCC Neuronal Glia Culture Facility lists: UCC Optical Imaging Facility lists: UCC Protein and Nucleic Acid Core Facility lists: UCC Transmission Electron Microscopy Laboratory lists: UH Manoa NMR Lab lists: UH Manoa Hawaii Center for AIDS Imaging Analysis Core lists: UH Manoa Analytical Biochemistry Shared Resource lists: UH Manoa BSL-3 Containment Facility lists: UH Manoa Biological Electron Microscope Facility lists: UH Manoa Biostatistics Shared Resources lists: University of Hawaii at Manoa Centers of Biomedical Research Excellence Bioinformatics Core Facility lists: UH Manoa COBRE Genomics Core lists: UH Manoa RCMI Molecular Pathology Core lists: UH Manoa COBRE Mouse Phenotyping Core lists: UH Manoa COBRE Transgenic Core lists: UH Manoa Clinical Protocol and Data Management Shared Resource lists: UH Manoa Evolutionary Genetics Core Facility lists: UH Manoa Genomics Shared Resource Core Facility lists: UH Manoa HURL Submersible Facility lists: UH Manoa Hawaii Space Flight Laboratory lists: University of Hawaii at Manoa INBRE Bioinformatics Core Facility lists: University of Hawaii at Manoa Informatics Shared Resource lists: UH Manoa Laboratory Support Shared Resources lists: UH Manoa Lyon Arboretum lists: UH Manoa Nutrition Support Shared Resource lists: UH Manoa PBRC Computer Network Support Facility lists: UH Manoa Pathology Shared Resources lists: UH Manoa RCMI Biostatistics and Data Management Facility lists: University of Hawaii at Manoa Greenwood Molecular Biology Facility lists: UH Manoa RCMI Histology and Imaging Core Facility lists: UH Manoa RCMI Pathogen Reference and Reagent Core lists: UPR Animal Resources Center lists: UH Manoa SOEST Engineering Support Facility lists: UH Manoa SOEST Flow Cytometry Facility lists: UH Manoa Sequencing Facility lists: UPR AABRE Program: Functional Genomics Research Center lists: UPR AABRE Program: Human Genetics Center lists: UPR AABRE Program: Protein Mass Spectrometry Facility lists: UPR AABRE Program: Sequencing and Genotyping Facility lists: University of Puerto Rico Biomedical Informatics Research Core lists: UPR Cayo Santiago Caribbean Primate Research Center lists: UPR Center for Drug Information and Research lists: UPR Center for Genomics in Health Disparities and Rare Disorders lists: UPR Center for Information Technologies and Telecommunications lists: UPR Central Electron Microscopy Unit lists: UPR Flow Cytometry Unit lists: UPR Infectious and Global 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lists: UTSA RCMI Computational Systems Biology Core lists: UTSA RCMI Nanotechnology and Human Health Core lists: UTSA SNRP Image Analysis Core lists: UTSA SNRP Neurostatistics Core lists: UTSA X-ray Crystallography Laboratory lists: VANTAGE lists: VICC Research Informatics lists: Vanderbilt Antibody and Protein Resource lists: Vanderbilt Automation and Informatics Core lists: Vanderbilt Biomolecular NMR Facility lists: Vanderbilt Biophysical Instrumentation Core Facility lists: Vanderbilt Biospecimen Shared Resource lists: Vanderbilt Biostatistics Collaboration Center lists: Vanderbilt Cardiovascular Translational and Clinical Research Core lists: Vanderbilt Diabetes Research and Training Center Cell Imaging Shared Resource Core Facility lists: Vanderbilt Center for Molecular Neuroscience Cores lists: Vanderbilt Chemical Synthesis Core Laboratory lists: Vanderbilt Clinical Research Center lists: Vanderbilt Clinical Trials Center lists: Vanderbilt Clinical Trials Shared Resource lists: Vanderbilt University Center for Human Genetics Research Computational Genomics Core lists: Vanderbilt Cooperative Human Tissue Network lists: Vanderbilt DNA Databank lists: Vanderbilt DNA Resources Core lists: Vanderbilt Eicosanoid Core Laboratory lists: Vanderbilt Genetic Studies Ascertainment Core lists: Vanderbilt High Throughput Screening Facility lists: Vanderbilt Diabetes Research and Training Center Hormone Assay and Analytical Services Core Facility lists: Vanderbilt Human Immunology Core Laboratory lists: Vanderbilt Innovative Translational Research Shared Resource lists: Vanderbilt Institute for Integrative Biosystems Research and Education Automated Biosystems Core Laboratory lists: Vanderbilt Institute for Integrative Biosystems Research and Education Microfabrication Core lists: Vanderbilt Institute of Nanoscale Science and Engineering lists: Vanderbilt Lipidomics Core Laboratory lists: Vanderbilt Mass Spectrometry Core Lab lists: Vanderbilt Mass Spectrometry Research Center Proteomics Laboratory lists: Vanderbilt Diabetes Research and Training Center Vanderbilt Diet Body Composition and Metabolism Core Facility lists: Vanderbilt Mouse Kidney Histology and Morphometry Core lists: Vanderbilt Mouse Kidney Physiology Core Lab lists: Vanderbilt Neurochemistry Core Laboratory lists: Wistar Flow Cytometry Core Facility lists: Vanderbilt Rat Neurobehavioral Laboratory lists: Vanderbilt Sleep Research Core lists: Vanderbilt Survey Research Shared Resource lists: Vanderbilt Tissue Core Laboratory lists: Vanderbilt Transgenic Mouse/Embryonic Stem Cell Shared Resource lists: Vanderbilt Translational Pathology Shared Resource lists: Vanderbilt Zebrafish Aquatic Facility lists: Wistar Bioinformatics Core Facility lists: Wistar Genomics Core Facility lists: Wistar Histotechnology Core Facility lists: Wistar Imaging Core Facility lists: Wistar Molecular Screening Facility lists: XULA Major Instrumentation Core lists: Wistar Protein Expression Facility lists: Wistar Proteomics and Metabolomics Core Facility lists: Wyss Institute Machine Shop / 3D Prototyping Core lists: Wyss Institute Materials Characterization Core lists: XULA Animal Care Facility lists: XULA Center for Nanomedicine and Drug Delivery lists: XULA RCMI Cell and Molecular Biology Core lists: XULA RCMI Molecular Structure and Modeling Core lists: Harvard FAS Bauer Core Laboratory lists: BWH Research Imaging Core lists: Penn Induced Pluripotent Stem Cell Core Facility lists: HNDC Enhanced NeuroImaging Core lists: University of Pennsylvania Genomics Analysis Core lists: Meharry Proteomics Core lists: Meharry Microarray and Bioinformatics Core lists: Dartmouth DartLab lists: MGH NextGen Sequencing Core lists: Joslin Diabetes Center Islet Isolation Core lists: MGH Psychiatric and Neurodevelopmental Genetics Unit Core Lab lists: HMS Research Imaging Solutions lists: Harvard SERI Graphic Services Core lists: DFCI Confocal and Light Microscopy Core Facility lists: BWH Specimen Bank lists: MGH Martinos Center for Biomedical Imaging Core Facility lists: HNDC NeuroBehavior Laboratory Core lists: Dartmouth Transgenics and Genetic Constructs Shared Resource lists: Harvard Chan Bioinformatics Core lists: HNDC Advanced Tissue Resource Center lists: DF/HCC DNA Resource Core lists: HNDC Drug Discovery in Neurodegeneration lists: DFCI Center for Cancer Computational Biology lists: HMS Systems Biology Flow Cytometry Facility lists: OHSU Molecular Virology Support Core is listed by: FORCE11 is related to: CTSAconnect is related to: Clinical and Translational Science Awards Consortium has parent organization: Harvard University; Cambridge; United States has parent organization: Oregon Health and Science University; Oregon; USA is parent organization of: eagle-i research resource ontology |
NCRR U24 RR029825; ARRA |
PMID:22434835 | Available to external user, The community can contribute to this resource | nlx_143592 | https://www.eagle-i.org/ https://www.force11.org/node/4661 |
SCR_013153 | 2026-02-11 10:58:48 | 10 | |||||
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Homophila Resource Report Resource Website |
Homophila (RRID:SCR_007717) | data or information resource, database | THIS RESOURCE IS NO LONGER IN SERVICE, documented on June 23, 2013. Homophila utilizes the sequence information of human disease genes from the NCBI OMIM (Online Mendelian Inheritance in Man) database in order to determine if sequence homologs of these genes exist in the current Drosophila sequence database (FlyBase). Sequences are compared using NCBI's BLAST program. The database is updated weekly and can be searched by human disease, gene name, OMIM number, title, subtitle and/or allelic variant descriptions. | homolog, human disease, human disease gene, human, gene, cognate |
is related to: OMIM has parent organization: University of California at San Diego; California; USA |
NCRR P 41 RR08605-06 | PMID:11752278 PMID:11381037 |
THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-02976 | SCR_007717 | Human disease to drosophila database | 2026-02-11 10:57:38 | 0 | ||||||
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Alternative Splicing Annotation Project II Database Resource Report Resource Website 1+ mentions |
Alternative Splicing Annotation Project II Database (RRID:SCR_000322) | ASAP II | data or information resource, database | THIS RESOURCE IS NO LONGER IN SERVICE, documented on 8/12/13. An expanded version of the Alternative Splicing Annotation Project (ASAP) database with a new interface and integration of comparative features using UCSC BLASTZ multiple alignments. It supports 9 vertebrate species, 4 insects, and nematodes, and provides with extensive alternative splicing analysis and their splicing variants. As for human alternative splicing data, newly added EST libraries were classified and included into previous tissue and cancer classification, and lists of tissue and cancer (normal) specific alternatively spliced genes are re-calculated and updated. They have created a novel orthologous exon and intron databases and their splice variants based on multiple alignment among several species. These orthologous exon and intron database can give more comprehensive homologous gene information than protein similarity based method. Furthermore, splice junction and exon identity among species can be valuable resources to elucidate species-specific genes. ASAP II database can be easily integrated with pygr (unpublished, the Python Graph Database Framework for Bioinformatics) and its powerful features such as graph query, multi-genome alignment query and etc. ASAP II can be searched by several different criteria such as gene symbol, gene name and ID (UniGene, GenBank etc.). The web interface provides 7 different kinds of views: (I) user query, UniGene annotation, orthologous genes and genome browsers; (II) genome alignment; (III) exons and orthologous exons; (IV) introns and orthologous introns; (V) alternative splicing; (IV) isoform and protein sequences; (VII) tissue and cancer vs. normal specificity. ASAP II shows genome alignments of isoforms, exons, and introns in UCSC-like genome browser. All alternative splicing relationships with supporting evidence information, types of alternative splicing patterns, and inclusion rate for skipped exons are listed in separate tables. Users can also search human data for tissue- and cancer-specific splice forms at the bottom of the gene summary page. The p-values for tissue-specificity as log-odds (LOD) scores, and highlight the results for LOD >= 3 and at least 3 EST sequences are all also reported. | exon, gene structure, genome, alternative splicing, cancer genome alignment, intron, isoform, orthologous exon, orthologous gene, orthologous intron, protein sequence, splice site, tissue, genome alignment, cancer |
is related to: ASAP: the Alternative Splicing Annotation Project has parent organization: University of California at Los Angeles; California; USA |
NCRR U54 RR021813; NIDCR DE-FC02-02ER63421 |
PMID:17108355 | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-02572 | SCR_000322 | ASAP II Database, Alternative Splicing Annotation Project II | 2026-02-11 10:56:01 | 2 | |||||
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EcoCyc Resource Report Resource Website 100+ mentions |
EcoCyc (RRID:SCR_002433) | EcoCyc, EcoCyc REF | data or information resource, database | Database for the bacterium Escherichia coli K-12 MG1655, the EcoCyc project performs literature-based curation of the entire genome, and of transcriptional regulation, transporters, and metabolic pathways. The long-term goal of the project is to describe the molecular catalog of the E. coli cell, as well as the functions of each of its molecular parts, to facilitate a system-level understanding of E. coli. EcoCyc is an electronic reference source for E. coli biologists, and for biologists who work with related microorganisms. | genome, metabolic pathway, transcription, transporters, escherichia coli, transcriptional regulation, metabolism, pathway, FASEB list |
uses: Pathway Tools is used by: NIF Data Federation is listed by: OMICtools is listed by: BioCyc is related to: MultiFun is related to: BioCyc is related to: BioCyc is related to: AmiGO is related to: NCBI BioSystems Database is related to: Pathway Tools has parent organization: Stanford Research Institute International |
NCRR ; NIGMS GM077678; NIGMS GM71962 |
PMID:23143106 PMID:21097882 |
Free, Freely available | OMICS_01645, nif-0000-02783, r3d100011277 | https://doi.org/10.17616/R34K99 | SCR_002433 | EcoCyc REF | 2026-02-11 10:56:28 | 482 | ||||
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Function BIRN Resource Report Resource Website 1+ mentions |
Function BIRN (RRID:SCR_007291) | FBIRN | data or information resource, portal, topical portal | The FBIRN Federated Informatics Research Environment (FIRE) includes tools and methods for multi-site functional neuroimaging. This includes resources for data collection, storage, sharing and management, tracking, and analysis of large fMRI datasets. fBIRN is a national initiative to advance biomedical research through data sharing and online collaboration. BIRN provides data-sharing infrastructure, software tools, strategies and advisory services - all from a single source. | fmri, 3d model, data storage, imaging, map, morphology, mri, neuroinformatics, segmentation, software, talairach, volume, warping, analyze, application, c++, csh/tcsh, data, database, database application, data resource, dicom, javascript, linux, magnetic resonance, nifti, ontology, pl/sql, posix/unix-like, python, quality metrics, spatial transformation, statistical operation, tcl/tk, unix shell, visualization, web resource, web service, workflow |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: Biomedical Informatics Research Network is parent organization of: BXH/XCEDE Tools is parent organization of: FBIRN Image Processing Scripts |
NIGMS ; NCRR 1U24-RR025736; NCRR U24-RR021992; NCRR U24-RR021760; NCRR 1U24-RR026057-01 |
nif-0000-00070 | http://www.nitrc.org/projects/fbirn | http://nbirn.net/tools/browse_tools.shtm | SCR_007291 | Functional Imaging BIRN | 2026-02-12 09:44:30 | 2 | |||||
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Madison Metabolomics Consortium Database Resource Report Resource Website 50+ mentions |
Madison Metabolomics Consortium Database (RRID:SCR_007803) | MMCD | data or information resource, database, resource | A database which supports high-throughput NMR and MS approaches to the identification and quantification of metabolites present in biological samples. MMCD serves as a hub for information on small molecules of biological interest gathered from electronic databases and the scientific literature. Each metabolite entry in the MMCD is supported by information in separate data fields, which provide the chemical formula, names and synonyms, structure, physical and chemical properties, NMR and MS data on pure compounds under defined conditions where available, NMR chemical shifts determined by empirical and/or theoretical approaches, calculated isotopomer masses, information on the presence of the metabolite in different biological species, and links to images, references, and other public databases. The MMCD search engine supports versatile data mining and allows users to make individual or bulk queries on the basis of experimental NMR and/or MS data plus other criteria. | database, metabolomics, metabolite, consortium, nmr, mas spectroscopy, FASEB list |
is listed by: 3DVC has parent organization: University of Wisconsin-Madison; Wisconsin; USA |
NIDDK R21 DK070297; NCRR P41 RR02301 |
PMID:18259166 | Public | nif-0000-03148 | SCR_007803 | Madison Metabolomics Consortium Database (MMCD) | 2026-02-12 09:44:34 | 60 | |||||
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Harvard - Oxford Cortical Structural Atlas Resource Report Resource Website 100+ mentions |
Harvard - Oxford Cortical Structural Atlas (RRID:SCR_001476) | Atlases | data or information resource, atlas, reference atlas | Probabilistic atlases covering 48 cortical and 21 subcortical structural areas, derived from structural data and segmentations kindly provided by the Harvard Center for Morphometric Analysis. T1-weighted images of 21 healthy male and 16 healthy female subjects (ages 18-50) were individually segmented by the CMA using semi-automated tools developed in-house. The T1-weighted images were affine-registered to MNI152 space using FLIRT (FSL), and the transforms then applied to the individual labels. Finally, these were combined across subjects to form population probability maps for each label. Segmentations used to create these atlases were provided by: David Kennedy and Christian Haselgrove, Centre for Morphometric Analysis, Harvard; Bruce Fischl, the Martinos Center for Biomedical Imaging, MGH; Janis Breeze and Jean Frazier from the Child and Adolescent Neuropsychiatric Research Program, Cambridge Health Alliance; Larry Seidman and Jill Goldstein from the Department of Psychiatry of Harvard Medical School. | male, female, t1-weighted image, cortical, subcortical, neuroanatomy, cortex |
has parent organization: Harvard University; Cambridge; United States is a plug in for: FSL |
Healthy | NCRR R01 RR16594-01A1; NIMH K01 MH01798; NINDS R01 NS052585-01; NIMH K08 MH01573 |
Free, Freely available | nlx_152707 | SCR_001476 | , Harvard Oxford Cortical Structural Atlas, Harvard-Oxford cortical and subcortical structural atlases, Harvard Oxford Atlas | 2026-02-12 09:43:10 | 144 |
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