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http://purl.bioontology.org/ontology/SITBAC

Ontology of context-based healthcare access-control policies.

Proper citation: Situation-Based Access Control Ontology (RRID:SCR_010429) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/OBOE-SBC

Extensible Observation Ontology for the Santa Barbara Coastal Long Term Ecological Research project (SBC-LTER). It extends core concepts defined in the OBOE suite that are particular to the Santa Barbara Coastal Long Term Ecological Research project''s data collection activities. These include specific measurement protocols, sites, etc. This is meant as a case study ontology for the Semtools project.

Proper citation: Santa Barbara Coastal Observation Ontology (RRID:SCR_010424) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/STY

Ontology of semantic types.

Proper citation: Semantic Types Ontology (RRID:SCR_010425) Copy   

•   Source: SciCrunch Registry

http://uberon.org

An integrated cross-species anatomy ontology representing a variety of entities classified according to traditional anatomical criteria such as structure, function and developmental lineage. The ontology includes comprehensive relationships to taxon-specific anatomical ontologies, allowing integration of functional, phenotype and expression data. Uberon consists of over 10000 classes (March 2014) representing structures that are shared across a variety of metazoans. The majority of these classes are chordate specific, and there is large bias towards model organisms and human.

Proper citation: UBERON (RRID:SCR_010668) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/SIO

Ontology that provides a simple, integrated upper level ontology (types, relations) for consistent knowledge representation across physical, processual and informational entities. It provides vocabulary for the Bio2RDF (http://bio2rdf.org) and SADI (http://sadiframework.org) projects.

Proper citation: Semanticscience Integrated Ontology (RRID:SCR_010427) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/OGMD

Ontology including the disease names, phenotypes and their classifications involved in Glucose Metabolism Disorder, Diabetes. (OBO and OWL format are available in sourceforge.)

Proper citation: Ontology of Glucose Metabolism Disorder (RRID:SCR_010399) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/TADS

Anatomy Ontology of the Tick, Families: Ixodidae, Argassidae

Proper citation: Tick Gross Anatomy Ontology (RRID:SCR_010433) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/TM-CONST

Ontology of the value set for the constitution property of the International Classification of Traditional Medicine (ICTM).

Proper citation: Traditional Medicine Constitution Value Set (RRID:SCR_010435) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/TM-SIGNS-AND-SYMPTS

Ontology of the value set for the Signs and Symptoms property of the International Classification of Traditional Medicine (ICTM).

Proper citation: Traditional Medicine Signs and Symptoms Value Set (RRID:SCR_010438) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/UNITSONT

A small ontology for the units of measurement developed during the development of the Sleep Domain Ontology (SDO). It supports the use of SDO within the PhysioMIMI application.

Proper citation: Units Ontology (RRID:SCR_010441) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/UO

Metrical units ontology for use in conjunction with PATO

Proper citation: Units of Measurement Ontology (RRID:SCR_010442) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/HOM

Ontology that represents concepts related to homology, as well as other concepts used to describe similarity and non-homology.

Proper citation: Ontology of Homology and Related Concepts in Biology (RRID:SCR_010400) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/LDA

Ontology of language terms used in the domain of autism available for consultation and sharing. The language terms were obtained via text mining and automatic retrieval of terms from the corpus of PubMed abstracts.

Proper citation: Ontology of Language Disorder in Autism (RRID:SCR_010401) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/PDO

An ontology for describing both human infectious disease caused by bacteria and the disease that is related to bacterial infection.

Proper citation: Pathogenic Disease Ontology (RRID:SCR_010405) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/PSIMOD

Ontology consisting of terms that describe protein chemical modifications, logically linked by an is_a relationship in such a way as to form a direct acyclic graph (DAG). The PSI-MOD ontology has more than 45 top-level nodes, and provides alternative hierarchical paths for classifying protein modifications either by the molecular structure of the modification, or by the amino acid residue that is modified.

Proper citation: Protein Modification Ontology (RRID:SCR_010412) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/QUDT

Collection of ontologies that define the base classes properties, and restrictions used for modeling physical quantities, units of measure, and their dimensions in various measurement systems. The goal of the QUDT ontology is to provide a unified model of, measurable quantities, units for measuring different kinds of quantities, the numerical values of quantities in different units of measure and the data structures and data types used to store and manipulate these objects in software. This OWL schema is a foundation for a basic treatment of units.

Proper citation: QUDT (RRID:SCR_010416) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/ROLEO

Ontology in the domain of role classification that aims to standardize role classification and support computer-assisted reasoning. RoleO is a community-based ontology, and its development follows the OBO Foundry principles.

Proper citation: Role Ontology (RRID:SCR_010420) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/LIPRO

An ontology that describes the LIPIDMAPS nomenclature classification explicitly using description logics (OWL-DL). Lipid classes are organized hierarchically with the super-classes restricted by generic necessary conditions. More specific necessary conditions are used to define membership requirements for sub classes of lipid according to appropriate functional groups. Lipid research is increasingly integrated within systems level biology such as lipidomics where lipid classification is required before appropriate annotation of chemical functions can be applied.

Proper citation: Lipid Ontology (RRID:SCR_003349) Copy   

•   Source: SciCrunch Registry

http://code.google.com/p/popcomm-ontology/

An ontology that models material entities, qualities, and processes related to collections of interacting organisms such as populations and communities. It is taxon neutral, and can be used for any species, including humans. The classes in the PCO are useful for describing evolutionary processes, organismal interactions, and ecological experiments. Practical applications of the PCO include community health care, plant pathology, behavioral studies, sociology, and ecology. The PCO is compliant with the Basic Formal Ontology (BFO) and is designed to be compatible with other OBO Foundry ontologies, such as the Gene Ontology (GO), which covers biological processes, and the Phenotypic Quality Ontology (PATO).

Proper citation: Population and Community Ontology (RRID:SCR_003462) Copy   

•   Source: SciCrunch Registry

http://archive.gramene.org/plant_ontology/ontology_browse.html#eo

A structured controlled vocabulary for the representation of plant environmental conditions.

Proper citation: Plant Environmental Conditions (RRID:SCR_003460) Copy   

•   Source: SciCrunch Registry