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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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BioModels Ontology Resource Report Resource Website |
BioModels Ontology (RRID:SCR_010125) | BIOMODELS | data or information resource, ontology, controlled vocabulary | OWL Representation of the models in the BioModels repository. | owl | is listed by: BioPortal | nlx_157326 | https://code.google.com/p/sbmlharvester/ | SCR_010125 | 2026-02-12 09:45:08 | 0 | ||||||||
|
Autism Spectrum Disorder Phenotype Ontology Resource Report Resource Website |
Autism Spectrum Disorder Phenotype Ontology (RRID:SCR_010006) | ASDPTO | data or information resource, ontology, controlled vocabulary | Ontology that encapsulates the Autism Spectrum Disorder behavioral phenotype, informed by the standard ASD assessment instruments and the currently known characteristics of this disorder. | owl, phenotype, behavior | is listed by: BioPortal | Autism Spectrum Disorder | PMID:24163114 | nlx_157322 | http://purl.bioontology.org/ontology/ASDPTO | SCR_010006 | 2026-02-12 09:45:05 | 0 | ||||||
|
International Classification of Primary Care Resource Report Resource Website |
International Classification of Primary Care (RRID:SCR_010262) | ICPC | data or information resource, ontology, controlled vocabulary | Ontology of the international classification of primary care (ICPC). Denmark: World Organisation of Family Doctors, 1993. | umls | is listed by: BioPortal | nlx_157453 | SCR_010262 | 2026-02-12 09:45:23 | 0 | |||||||||
|
International Classification of Diseases Version 9 - Clinical Modification Resource Report Resource Website |
International Classification of Diseases Version 9 - Clinical Modification (RRID:SCR_010104) | ICD9CM | data or information resource, ontology, controlled vocabulary | Ontology of the international standard diagnostic classification for all general epidemiological, many health management purposes and clinical use. | umls | is listed by: BioPortal | nlx_157451 | SCR_010104 | 2026-02-12 09:45:06 | 0 | |||||||||
|
Biological Imaging Methods Ontology Resource Report Resource Website 1+ mentions |
Biological Imaging Methods Ontology (RRID:SCR_010235) | FBbi | data or information resource, ontology, controlled vocabulary | A structured controlled vocabulary of sample preparation, visualization and imaging methods used in biomedical research. | obo |
is listed by: BioPortal has parent organization: Cell Image Library (CIL) |
nlx_157334 | SCR_010235 | 2026-02-12 09:45:11 | 1 | |||||||||
|
International Classification of Functioning Disability and Health Resource Report Resource Website |
International Classification of Functioning Disability and Health (RRID:SCR_010239) | ICF | data or information resource, ontology, controlled vocabulary | A classification of health and health-related domains. These domains are classified from body, individual and societal perspectives by means of two lists: a list of body functions and structure, and a list of domains of activity and participation. Since an individual''s functioning and disability occurs in a context, the ICF also includes a list of environmental factors. | owl | is listed by: BioPortal | nlx_157452 | SCR_010239 | 2026-02-12 09:45:08 | 0 | |||||||||
|
Time Event Ontology Resource Report Resource Website |
Time Event Ontology (RRID:SCR_000310) | TEO | data or information resource, ontology, controlled vocabulary | Ontology for representing events, time, and their relationships. | owl | is listed by: BioPortal | nlx_157610 | SCR_000310 | 2026-02-12 09:42:57 | 0 | |||||||||
|
Variation Ontology Resource Report Resource Website |
Variation Ontology (RRID:SCR_000311) | VARIO | data or information resource, ontology, controlled vocabulary | An ontology for standardized, systematic description of effects, consequences and mechanisms of variations. | obo | is listed by: BioPortal | nlx_157622 | SCR_000311 | 2026-02-12 09:42:57 | 0 | |||||||||
|
Semantic DICOM Ontology Resource Report Resource Website |
Semantic DICOM Ontology (RRID:SCR_000309) | SEDI | data or information resource, ontology, controlled vocabulary | An ontology for DICOM as used in the SeDI project. | owl | is listed by: BioPortal | nlx_157583 | SCR_000309 | 2026-02-12 09:42:57 | 0 | |||||||||
|
Human Disease Ontology Resource Report Resource Website 1+ mentions |
Human Disease Ontology (RRID:SCR_000476) | DO | data or information resource, database, ontology, controlled vocabulary | Comprehensive hierarchical controlled vocabulary for human disease representation.Open source ontology for integration of biomedical data associated with human disease. Disease Ontology database represents comprehensive knowledge base of inherited, developmental and acquired human diseases. | obo, pathological, organismal, cellular, disease, biomedical, health, neurologic disease, neurological disorder, phenotype, bio.tools, |
is used by: DOAF is listed by: BioPortal is listed by: OBO is listed by: bio.tools is listed by: Debian is related to: PharmGKB Ontology is related to: GWASdb is related to: NUgene Project is related to: FunDO is related to: Neurocarta has parent organization: University of Maryland School of Medicine; Maryland; USA |
NHGRI U24 HG012557 | PMID:22080554 | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-35926, nlx_157432, SCR_003491, biotools:disease_ontology | http://disease-ontology.org/ https://bio.tools/disease_ontology http://purl.obolibrary.org/obo/doid.obo |
http://do-wiki.nubic.northwestern.edu/index.php/Main_Page | SCR_000476 | Human Disease Ontology Knowledgebase, Disease Ontology | 2026-02-12 09:42:59 | 5 | |||
|
Gazetteer Resource Report Resource Website 1+ mentions |
Gazetteer (RRID:SCR_000473) | GAZ | topical portal, portal, data or information resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented on April 23, 2014. Description not available. | obo, owl |
is listed by: BioPortal is listed by: OBO has parent organization: Genomic Standards Consortium |
THIS RESOURCE IS NO LONGER IN SERVICE | nlx_157412 | http://purl.obolibrary.org/obo/gaz.owl http://build.berkeleybop.org/job/build-gaz/lastSuccessfulBuild/artifact/gaz.obo |
http://gensc.org/gc_wiki/index.php/GAZ_Project | SCR_000473 | 2026-02-12 09:42:58 | 1 | ||||||
|
Phylogenetic Ontology Resource Report Resource Website |
Phylogenetic Ontology (RRID:SCR_000912) | PHYLONT | data or information resource, ontology, controlled vocabulary | Ontology for Phylogenetic Analysis | owl | is listed by: BioPortal | nlx_157550 | SCR_000912 | 2026-02-12 09:43:04 | 0 | |||||||||
|
Bleeding History Phenotype Ontology Resource Report Resource Website |
Bleeding History Phenotype Ontology (RRID:SCR_001165) | BHO | data or information resource, ontology, controlled vocabulary | An application ontology devoted to the standardized recording of phenotypic data related to hemorrhagic disorders. | owl | is listed by: BioPortal | Hemorrhagic disorder | nlx_157338 | SCR_001165 | 2026-02-12 09:43:06 | 0 | ||||||||
|
Amphibian Taxonomy Ontology Resource Report Resource Website |
Amphibian Taxonomy Ontology (RRID:SCR_000906) | ATO | data or information resource, ontology, controlled vocabulary | A taxonomy of Amphibia | obo | is listed by: BioPortal | nlx_157317 | SCR_000906 | 2026-02-12 09:43:04 | 0 | |||||||||
|
Anatomic Pathology Lexicon Resource Report Resource Website |
Anatomic Pathology Lexicon (RRID:SCR_000907) | PATHLEX | data or information resource, ontology, controlled vocabulary | A comprehensive lexicon - a unified language of anatomic pathology terms - for standardized indexing and retrieval of anatomic pathology information resources. | owl | is listed by: BioPortal | nlx_157318 | SCR_000907 | 2026-02-12 09:43:04 | 0 | |||||||||
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HIV ontology Resource Report Resource Website |
HIV ontology (RRID:SCR_000908) | HIV | data or information resource, ontology, controlled vocabulary | Ontology that encompasses all knowledge about HIV | obo | is listed by: BioPortal | HIV | nlx_157422 | SCR_000908 | 2026-02-12 09:43:04 | 0 | ||||||||
|
Body System Terms from ICD11 Resource Report Resource Website |
Body System Terms from ICD11 (RRID:SCR_001252) | ICD11-BODYSYSTEM | data or information resource, ontology, controlled vocabulary | Ontology of a set of body-system terms used in the ICD (International Classification of Diseases) 11 revision | owl | is listed by: BioPortal | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_157339 | SCR_001252 | 2026-02-12 09:43:07 | 0 | ||||||||
|
Teleost Anatomy Ontology Resource Report Resource Website 1+ mentions |
Teleost Anatomy Ontology (RRID:SCR_001610) | TAO | data or information resource, ontology, controlled vocabulary | A multi-species anatomy ontology for teleost fishes. It was originally seeded from ZFA, but covers terms relevant to other taxa. The TAO uses terms from the Common Anatomy Reference Ontology (CARO) as a template for its upper level nodes, and the Vertebrate Skeletal Anatomy Ontology (VSAO) for general skeletal anatomy classes. Growth of the TAO is enabled by contributions from data curators and the ichthyological community. The TAO can be browsed by using the NCBO BioPortal and data annotated using TAO terms can be queried using the Phenoscape Knowedgebase. | homology, anatomy, morphology, fish, obo, organismal, zebrafish anatomy |
uses: Zebrafish Anatomical Ontology uses: Common Anatomy Reference Ontology uses: Vertebrate Skeletal Anatomy Ontology is used by: Phenoscape Knowledgebase is listed by: BioPortal is listed by: OBO has parent organization: Phenoscape |
PMID:20547776 | Free, Freely available | nlx_153876 | http://purl.obolibrary.org/obo/tao.obo http://bioportal.bioontology.org/ontologies/38362?p=terms |
https://www.nescent.org/phenoscape/ | SCR_001610 | 2026-02-12 09:43:12 | 1 | |||||
|
Biological Pathways Exchange Resource Report Resource Website 50+ mentions |
Biological Pathways Exchange (RRID:SCR_001681) | project portal, data or information resource, portal, ontology, controlled vocabulary | Community standard for pathway data sharing. Standard language that aims to enable integration, exchange, visualization and analysis of biological pathway data. Supports data exchange between pathway data groups and thus reduces complexity of interchange between data formats by providing accepted standard format for pathway data. Open and collaborative effort by community of researchers, software developers, and institutions. BioPAX is defined in OWL DL and is represented in RDF/XML format.Uses W3C standard Web Ontology Language, OWL. | Standard language, community standard, pathway data sharing, biological pathway data, data exchange, W3C standard, Web Ontology Language, OWL, |
is listed by: BioPortal is related to: cPath is related to: Biofactoid is related to: PathGuide: the pathway resource list |
U.S. Department of Energy Workshop ; NHGRI P41HG004118 |
PMID:20829833 | Free, Available for download, Freely available | SCR_009881, nlx_157327, nif-0000-10171 | http://purl.bioontology.org/ontology/BP | SCR_001681 | BioPAX, BioPAX: Biological Pathways Exchange | 2026-02-12 09:43:13 | 90 | |||||
|
Lipid Ontology Resource Report Resource Website |
Lipid Ontology (RRID:SCR_003349) | LiPrO | data or information resource, ontology, controlled vocabulary | An ontology that describes the LIPIDMAPS nomenclature classification explicitly using description logics (OWL-DL). Lipid classes are organized hierarchically with the super-classes restricted by generic necessary conditions. More specific necessary conditions are used to define membership requirements for sub classes of lipid according to appropriate functional groups. Lipid research is increasingly integrated within systems level biology such as lipidomics where lipid classification is required before appropriate annotation of chemical functions can be applied. | owl, lipid, ontology |
is listed by: BioPortal is listed by: OBO |
Free, Available for download, Freely available | nlx_157458 | http://www.lipidprofiles.com/LipidOntology | SCR_003349 | 2026-02-12 09:43:35 | 0 |
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