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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
http://watson.hgen.pitt.edu/register/soft_doc.html,
THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 16,2023. Software application that assigns each person the haplotype with the highest conditional probability using Elston-Stewart algorithm (entry from Genetic Analysis Software)
Proper citation: HAPLO 1 (RRID:SCR_009058) Copy
http://www.genetics.emory.edu/labs/epstein/software/scout/index.html
Software program for conducting combined association analysis of triads and unrelated subjects (entry from Genetic Analysis Software)
Proper citation: SCOUT (RRID:SCR_009054) Copy
http://www.cs.helsinki.fi/group/genetics/haplotyping.html
Software application for population-based haplotyping (entry from Genetic Analysis Software)
Proper citation: HAPLOREC (RRID:SCR_009055) Copy
https://github.com/gaow/genetic-analysis-software/blob/master/pages/SEGPATH.md
THIS RESOURCE IS NO LONGER IN SERVICE, documented September 29, 2016. Software for segregation and pathway analysis.
Proper citation: SEGPATH (RRID:SCR_009052) Copy
http://www.mds.qmw.ac.uk/statgen/dcurtis/software.html
THIS RESOURCE IS NO LONGER IN SERVICE. Documetned on May 12,2023. Software application (entry from Genetic Analysis Software)
Proper citation: FASTMAP (2) (RRID:SCR_008635) Copy
https://github.com/gaow/genetic-analysis-software/blob/master/pages/KIN.md
THIS RESOURCE IS NO LONGER IN SERVICE, documented September 29, 2016. Software application to calculate kinship coefficient or coefficient of coancestry (the probability that alleles at a given locus are identical by descent).
Proper citation: KIN (RRID:SCR_009047) Copy
http://chgr.mc.vanderbilt.edu/genomeSIMLA/
Software application that is a forward-time population simulation method that can simulate realistic patterns of LD in both family-based and case-control datasets. (entry from Genetic Analysis Software)
Proper citation: GENOMESIMLA (RRID:SCR_008990) Copy
Software application that is a graphic way of organizing the mass of information gathered during a family assessment and finding patterns in the family system (entry from Genetic Analysis Software)
Proper citation: GENOGRAM-MAKER (RRID:SCR_008751) Copy
Software application to reduce family members so the families can be used in GENEHUNTER program. FASTER eliminates the most redundant individuals according to the set of weights (preferences) (Age, Information about genetic Markers, etc.) The program has several features such as automatical reducement of branches without any affected individuals, etc. (entry from Genetic Analysis Software)
Proper citation: FASTER (RRID:SCR_009045) Copy
Software application that integrates a broad spectrum of data mining, statistical analysis, interactive visualization and modeling tools that allow QTL analysis based on advanced and sophisticated methods for maximum extraction of the mapping information from data. (entry from Genetic Analysis Software)
Proper citation: MULTIQTL (RRID:SCR_009043) Copy
http://galton.uchicago.edu/~mcpeek/software/spermseg
Software application for analysis of segregation in single-sperm data (entry from Genetic Analysis Software)
Proper citation: SPERMSEG (RRID:SCR_009044) Copy
http://cedar.genetics.soton.ac.uk/pub/PROGRAMS/ALLASS
Software application (entry from Genetic Analysis Software)
Proper citation: ALLASS (RRID:SCR_009040) Copy
http://cooke.gsf.de/wjst/download.cfm
Software application that allows pedigree entry and retrieval from an internet browser into a distant MS ACCESS database. Includes IP access restriction, automatic numbering of families and individuals and database consistency checks. (entry from Genetic Analysis Software)
Proper citation: PEDJAVA (RRID:SCR_008429) Copy
http://www.nhgri.nih.gov/DIR/IDRB/GASP/
Software tool for testing and investigating methods in statistical genetics by generating samples of family data based on user specified models. (entry from Genetic Analysis Software), THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.
Proper citation: GASP (RRID:SCR_008703) Copy
A set of programs for performing multipoint exclusion mapping of affected sibling pair data for discrete traits. (entry from Genetic Analysis Software)
Proper citation: ASPEX (RRID:SCR_008414) Copy
http://mlemire.freeshell.org/software.html
THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 12,2023. Software application with implementation of the Sad statistic, more robust to transmission ratio distortion in the context of allele sharing (entry from Genetic Analysis Software)
Proper citation: GENEHUNTER++SAD (RRID:SCR_008777) Copy
http://pbil.univ-lyon1.fr/software/mareymap/
Software application that is a meiotic recombination rate estimation program. (entry from Genetic Analysis Software), THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.
Proper citation: MAREYMAP (RRID:SCR_009066) Copy
http://associationviewer.vital-it.ch/
A Java application used to display SNPs in a genetic context. Supplementary data (such as genes or LD plots) is downloaded from various public data sources on the fly and saved locally in a cache. Custom data can be added as supplementary tracks. (entry from Genetic Analysis Software)
Proper citation: ASSOCIATIONVIEWER (RRID:SCR_009063) Copy
https://github.com/gaow/genetic-analysis-software/blob/master/pages/WHICHRUN.md
THIS RESOURCE IS NO LONGER IN SERVCE, documented September 22, 2016. Software application that uses multilocus genotypic data to allocate individuals to their most likely source population.
Proper citation: WHICHRUN (RRID:SCR_009064) Copy
http://www.mapmanager.org/mmQTX.html
A graphic, interactive program to map quantitative trait loci using intercrosses, backcrosses or recombinant inbred strains in experimental plants or animals. A completely rewritten cross-platform version of Map Manager QT with enhanced analysis functions. (entry from Genetic Analysis Software)
Proper citation: MAP MANAGER QTX (RRID:SCR_009061) Copy
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