Searching the RRID Resource Information Network
Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.
SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Center for In Vivo Microscopy Resource Report Resource Website 10+ mentions |
Center for In Vivo Microscopy (RRID:SCR_001426) | CIVM | biomedical technology research center, training resource | Biomedical technology research center dedicated to the development of novel imaging methods for the basic scientist and the application of the methods to important biomedical questions. The CIVM has played a major role in the development of magnetic resonance microscopy with specialized MR imaging systems capable of imaging at more than 500,000x higher resolution than is common in the clinical domain. The CIVM was the first to demonstrate MR images using hyperpolarized 3He which has been moved from mouse to man with recent clinical trials performed at Duke in collaboration with GE. More recently the CIVM has developed the molecular imaging workbench---a system dedicated to multimodality cardiopulmonary imaging in the rodent. Their collaborators are employing these unique imaging systems in an extraordinary range of mouse and rat models of neurologic disease, cardiopulmonary disease and cancer to illuminate the underlying biology and explore new therapies. | imaging, magnetic resonance microscopy, magnetic resonance imaging, clinical, mri, ct, x-ray, ultrasound, confocal, optical, spect | has parent organization: Duke University; North Carolina; USA | Cardiopulmonary disease, Cancer, Neurological disease | NIBIB 4P41EB015897-27 | Free, Freely Available | nlx_152650 | SCR_001426 | Duke Center for In Vivo Microscopy | 2026-02-14 02:07:18 | 10 | |||||
|
EID: Exon-Intron Database Resource Report Resource Website 10+ mentions |
EID: Exon-Intron Database (RRID:SCR_002469) | EID | data or information resource, data set | Data sets of protein-coding intron-containing genes that contain gene information from humans, mice, rats, and other eukaryotes, as well as genes from species whose genomes have not been completely sequenced. This is a comprehensive and convenient dataset of sequences for computational biologists who study exon-intron gene structures and pre-mRNA splicing. The database is derived from GenBank release 112, and it contains protein-coding genes that harbor introns, along with extensive descriptions of each gene and its DNA and protein sequences, as well as splice motif information. They have created subdatabases of genes whose intron positions have been experimentally determined. The collection also contains data on untranslated regions of gene sequences and intron-less genes. For species with entirely sequenced genomes, species-specific databases have been generated. A novel Mammalian Orthologous Intron Database (MOID) has been introduced which includes the full set of introns that come from orthologous genes that have the same positions relative to the reading frames. | eukaryote genome, exon, exon-intro, gene structure, genome splicing, intron, ortholog, fasta, gene, protein-coding gene, splice, motif, gene prediction, structure, coding region |
is listed by: OMICtools has parent organization: University of Toledo; Ohio; USA |
PMID:16772261 PMID:10592221 |
Free, Available for download, Freely available | OMICS_01886, nif-0000-02793 | http://www.utoledo.edu/med/depts/bioinfo/database.html | http://www.meduohio.edu/bioinfo/eid/, http://mcb.harvard.edu/gilbert/EID | SCR_002469 | The Exon-Intron Database, Exon-Intron Database | 2026-02-14 02:07:47 | 11 | ||||
|
Temporal-Lobe: Hippocampal - Parahippocampal Neuroanatomy of the Rat Resource Report Resource Website 1+ mentions |
Temporal-Lobe: Hippocampal - Parahippocampal Neuroanatomy of the Rat (RRID:SCR_002816) | Temporal-lobe.com | data or information resource, data set | Interactive diagram containing existing knowledge of hippocampal-parahippocampal connections in which any connection can be turned on or off at the level of cortical layers. It includes references for each connection. | function, anatomical, connection, cortical, diagram, hippocampus, layer, neuroanatomy, neuroscience, parahippocampal, projection, subfield, temporal, lobe, topological, connectome, magnetic resonance, connectivity, formation, parahippocampal region, retrosplenial cortex, tract tracing |
is used by: NIF Data Federation is used by: Integrated Nervous System Connectivity is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: Rat Hippocampus Atlas is related to: Integrated Manually Extracted Annotation has parent organization: Norwegian University of Science and Technology; Trondheim; Norway |
Research Council of Norway ; various independent donations |
PMID:21847380 PMID:19300446 |
Freely available, Account required | nif-0000-24805 | http://www.nitrc.org/projects/connectivity | SCR_002816 | Parahippocampal-hippocampal network, TEMPORAL-LOBE, Parahippocampal hippocampal connectivity | 2026-02-14 02:07:29 | 7 | ||||
|
University of Chicago Diabetes Research and Training Center Islet Cell Biology Core Resource Report Resource Website |
University of Chicago Diabetes Research and Training Center Islet Cell Biology Core (RRID:SCR_015132) | core facility, access service resource, service resource, resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on November 7,2024. Core which provides services and hands-on training in the isolation and functional characterization of pancreatic islets from normal and diabetic humans and mice. It also maintains a repository of insulinoma cell lines for distribution. It puts emphasis on facilitating studies of primary islet cells and it has developed many unique tools and techniques for carrying such studies including novel animals models, biophysical methods and a library of adenovirus-based expression constructs for studying beta-cell function. | islet cell biology, beta cells, health and disease, isolation of pancreatic islets |
is listed by: NIDDK Information Network (dkNET) has parent organization: University of Chicago; Illinois; USA has parent organization: University of Chicago Diabetes Research and Training Center is organization facet of: University of Chicago Diabetes Research and Training Center |
Diabetes | NIDDK DK20595 | THIS RESOURCE IS NO LONGER IN SERVICE | SCR_015132 | 2026-02-14 02:08:25 | 0 | ||||||||
|
Washington University School of Medicine Diabetes Research Center Translational Diagnostics Core Resource Report Resource Website |
Washington University School of Medicine Diabetes Research Center Translational Diagnostics Core (RRID:SCR_015161) | core facility, access service resource, service resource | Core provides range of assays for human and animal hormones, peptides, and metabolites related to metabolic disorders. | immunoassay, hormone assay, metabolite assay, translational medicine |
is listed by: NIDDK Information Network (dkNET) has parent organization: Washington University School of Medicine in St. Louis; Missouri; USA has parent organization: Washington University School of Medicine Diabetes Research Center is organization facet of: Washington University School of Medicine Diabetes Research Center |
Diabetes | NIDDK P30DK020579 | Open | SCR_015161 | 2026-02-14 02:07:54 | 0 | ||||||||
|
Yale Liver Center Cellular and Molecular Physiology Core Resource Report Resource Website |
Yale Liver Center Cellular and Molecular Physiology Core (RRID:SCR_015258) | core facility, access service resource, service resource, resource | Core facility that provides technical expertise, equipment and personnel to Liver Center Investigators who wish to work with animal models of liver disease, isolated liver cells, or gene expression in liver tissue. The Cell Isolation sub-core isolates hepatocytes and non-parenchymal liver cells primarily from rat and mouse, while the Molecular Biology sub-core provides equipment and expertise to Liver Center members in a centralized facility. | liver disease animal model, liver cell animal model, liver tissue gene expression |
is listed by: NIDDK Information Network (dkNET) has parent organization: Yale School of Medicine; Connecticut; USA has parent organization: Yale Liver Center is organization facet of: Yale Liver Center |
liver disease | NIDDK P30DK034989 | Available to Yale Liver Center members | SCR_015258 | 2026-02-14 02:08:02 | 0 | ||||||||
|
University of Alabama at Birmingham Nutrition and Obesity Research Center Animal Models Core Resource Report Resource Website |
University of Alabama at Birmingham Nutrition and Obesity Research Center Animal Models Core (RRID:SCR_015466) | core facility, access service resource, service resource, resource | Core that provides specialized expertise in the use of animal models and instrumentation to facilitate animal research related to nutrition and obesity. | obesity animal model, nutrition animal model, animal model service |
is listed by: NIDDK Information Network (dkNET) has parent organization: University of Alabama at Birmingham; Alabama; USA has parent organization: University of Alabama at Birmingham Nutrition and Obesity Research Center is organization facet of: University of Alabama at Birmingham Nutrition and Obesity Research Center |
Obesity | NIDDK P30DK056336 | Available to the research community, Fee for service | SCR_015466 | 2026-02-14 02:07:59 | 0 | ||||||||
|
Optogenetics and Transgenic Technology Core Resource Report Resource Website 1+ mentions |
Optogenetics and Transgenic Technology Core (RRID:SCR_014785) | core facility, access service resource, service resource | Core facility and data repository which creates and characterizes transgenic rats for use in models of neurological diseases, such as addiction and neurodegeneration. Researchers can request strain(s) from RRRC or go to the Transgenic Rat Request page. | core facility, data repository, rat, transgenic rat, intramural research project, nida, neurological disease | has parent organization: National Institute on Drug Abuse | Neurological disease | Available to the research community, Annual feedback required | SCR_014785 | NIDA Trangenic Rat Project | 2026-02-14 02:08:24 | 1 | ||||||||
|
CWRU In Vivo Animal Facilities Resource Report Resource Website |
CWRU In Vivo Animal Facilities (RRID:SCR_014209) | core facility, access service resource, service resource | A set of core facilities of Case Western Reserve University School of Medicine which allows users to create and analyze in vivo animal models. The various facilities provide animal care, transgenic models, imaging, irradiation, and phenotyping for research concerning such topics as cancer, metabolic processes, and behavior. In vivo animals provided include mice, zebrafish, and rodents. | core facility, in vivo animal model, mouse model, zebrafish model, rat model, |
is used by: Integrated Animals has parent organization: Case Western Reserve University; Ohio; USA |
Available to the research community | SCR_014209 | CWRU In Vivo Animal Core Facilities, Case Western Reserve University In Vivo Animal Core Facilities | 2026-02-14 02:08:33 | 0 | |||||||||
|
Texas A and M Health Science Center MSC Distribution Resource Report Resource Website 10+ mentions |
Texas A and M Health Science Center MSC Distribution (RRID:SCR_005522) | Texas A&M MSC Distribution | biomaterial supply resource, cell repository, material resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on October 29,2025. Center for cell line distribution and stock at Texas A&M Health Science Center College of Medicine Institute for Regenerative Medicine. Scott & White have received a grant funded by the NIH to provide well-characterized human adult stem cells, rat stem cells, and mouse stem cells to academic researchers worldwide upon request. | stem cell, bone marrow mesenchymal stem cell, multipotent mesenchymal stromal cell, marrow stromal cell, frozen, bone marrow, adult, adult human, adult rat, lewis rat, c57bl/6j, experimental protocol |
is listed by: One Mind Biospecimen Bank Listing has parent organization: Texas A and M Health Science Center College of Medicine; Texas; USA |
NIH Office of the Director P40 OD011050 | THIS RESOURCE IS NO LONGER IN SERVICE. | nlx_144619, SCR_013734 | SCR_005522 | Texas A&M Health Science Center MSC Distribution, Texas A M Health Science Center MSC Distribution, Institute for Regenerative Medicine at Scott & White MSC Distribution, Texas A&M Health Science Center College of Medicine Institute for Regenerative Medicine MSC Distribution, Adult Mesenchymal Stem Cell Resource | 2026-02-14 02:05:29 | 19 | ||||||
|
Cell Line Knowledge Base Resource Report Resource Website |
Cell Line Knowledge Base (RRID:SCR_005832) | CLKB | biomaterial supply resource, cell repository, material resource | Public data warehouse for searching cell line data extracted from both ATCC and HyperCLDB. The knowledge base uses the Cell Line Ontology, created with the Protege ontology editing tool from the National Center for Biomedical Ontologies (NCBO) and merges concepts from other ontologies, including the Cell Type Ontology. The Cell Line Knowledge Base uses our Cell Line Ontology as the underlying data model. The ontology defines the following cell line attributes: Cell Line ID, Organism, Tissue, Pathology, Growth Mode, MeSH ID. To report errors in the data or to add cell line data to the knowledge base, please email: clbk-data (at) umich.edu | cell, cell line |
is listed by: One Mind Biospecimen Bank Listing is related to: ATCC is related to: Hyper Cell Line Database is related to: Cell Type Ontology is related to: Cell Line Ontology has parent organization: National Center for Integrative Biomedical Informatics |
Public, The community can contribute to this resource | nlx_149341 | SCR_005832 | Knowledge Base, Cell Line Knowledge, CLKB | 2026-02-14 02:05:29 | 0 | |||||||
|
Rat Hippocampus Atlas Resource Report Resource Website 1+ mentions |
Rat Hippocampus Atlas (RRID:SCR_005552) | Rat Hippocampus Atlas | data or information resource, atlas, reference atlas | An interactive reference atlas providing a systematic overview of cyto- and chemoarchectonical features of the hippocampus proper, fasciola, and associated parahippocampal cortices. This atlas system has been developed to serve the need to integrate detailed descriptions of structures and criteria defining boundaries and atlas images in which the underlying histological features can be explored. Features * Alphabetical and hierarchical overview of 18 hippocampal structures * Detailed, illustrated descriptions of 63 boundaries * Interactive image repository with ~100 coronal histological images stained for NeuN, calbindin, and parvalbumin * Triple image viewer in which differently stained neighboring sections can be interactively compared * Graphical overlay of substructures based on described boundary criteria * Bidirectional links between structure descriptions and image repository The atlas is based on histological material from an adult Long Evans rat, stained for NeuN, calbindin, and parvalbumin. The system is intended for researchers working in the field, as well as students interested in this brain region. The atlas is accessed through the structure index or image viewer. Re-use of data from this repository is allowed provided that reference is given to the publication. | rat, hippocampus, adult rat, long evans rat, hippocampus proper, fasciola, parahippocampal cortex, neuroanatomy, histology |
is related to: Temporal-Lobe: Hippocampal - Parahippocampal Neuroanatomy of the Rat has parent organization: University of Oslo; Oslo; Norway |
University of Oslo; Oslo; Norway ; Research Council of Norway ; International Neuroinformatics Coordinating Facility ; Norwegian Node |
PMID:21519393 | nlx_144643 | SCR_005552 | 2026-02-14 02:05:25 | 4 | |||||||
|
RIKEN integrated database of mammals Resource Report Resource Website |
RIKEN integrated database of mammals (RRID:SCR_006890) | RIKEN integrated database of mammals | data or information resource, portal, database |
THIS RESOURCE IS NO LONGER IN SERVICE. Documented on August 16, 2019. A database that integrates not only RIKEN''''s original large-scale mammalian databases, such as FANTOM, the ENU mutagenesis program, the RIKEN Cerebellar Development Transcriptome Database and the Bioresource Database, but also imported data from public databases, such as Ensembl, MGI and biomedical ontologies. Our integrated database has been implemented on the infrastructure of publication medium for databases, termed SciNetS/SciNeS, or the Scientists'''' Networking System, where the data and metadata are structured as a semantic web and are downloadable in various standardized formats. The top-level ontology-based implementation of mammal-related data directly integrates the representative knowledge and individual data records in existing databases to ensure advanced cross-database searches and reduced unevenness of the data management operations. Through the development of this database, we propose a novel methodology for the development of standardized comprehensive management of heterogeneous data sets in multiple databases to improve the sustainability, accessibility, utility and publicity of the data of biomedical information. |
integration, network, standardization, biomedical, bio.tools |
is listed by: Debian is listed by: bio.tools is related to: Functional Annotation of the Mammalian Genome is related to: Cerebellar Development Transcriptome Database is related to: Ensembl is related to: Mouse Genome Informatics (MGI) is related to: OBO has parent organization: RIKEN Yokohama Institute; Kanagawa; Japan |
Japanese Ministry of Education Culture Sports Science and Technology MEXT | PMID:21076152 | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_151886, biotools:riken | https://bio.tools/riken | SCR_006890 | 2026-02-14 02:05:23 | 0 | |||||
|
Tulane Stem Cell Research and Regenerative Medicine Tissue Culture Core Resource Report Resource Website 1+ mentions |
Tulane Stem Cell Research and Regenerative Medicine Tissue Culture Core (RRID:SCR_007342) | Tulane Tissue Culture Core | biomaterial supply resource, cell repository, material resource | The Stem Cell Research and Regenerative Medicine''s Tissue Culture Core provides cells for research use within the department, as well as for distribution to other facilities. The core obtains hMSCs from bone marrow donor samples and expands these cells for research use. The hMSC''s are also characterized for bone, fat and cartilage differentiation, and are stored on site for use. The Tissue Culture Core also handles the expansion and characterization of mouse and rat MSC''s. The animal cells are cultured in a separate area, and never interact with human derived cells. We also have a supply of hMSC''s marked with GFP+, Mito Red and Mito Blue available. | stem cell, mesenchymal stem cell, marrow stromal cell, frozen, adult, bone marrow, adipose tissue, bone, fat, cartilage |
is listed by: One Mind Biospecimen Bank Listing has parent organization: Tulane University School of Medicine; Louisiana; USA |
United States Department of DefenseBlueprint for Neuroscience Research ; NSF ; NIH |
Public: The Tissue Culture Core provides cells for research use within the department, As well as for distribution to other facilities. | nif-0000-00246 | http://www.som.tulane.edu/gene_therapy/distribute.shtml | SCR_007342 | Tulane Stem Cell Research Regenerative Medicine Tissue Culture Core | 2026-02-14 02:05:31 | 1 | |||||
|
Gene Weaver Resource Report Resource Website 10+ mentions |
Gene Weaver (RRID:SCR_003009) | data repository, storage service resource, data analysis service, analysis service resource, data or information resource, production service resource, service resource, database | Freely accessible phenotype-centered database with integrated analysis and visualization tools. It combines diverse data sets from multiple species and experiment types, and allows data sharing across collaborative groups or to public users. It was conceived of as a tool for the integration of biological functions based on the molecular processes that subserved them. From these data, an empirically derived ontology may one day be inferred. Users have found the system valuable for a wide range of applications in the arena of functional genomic data integration. | phenotype, microarray, gene, genome, functional genomics, process, pathway, function, gene set, genomic data integration, analysis, visualization |
is used by: NIF Data Federation is used by: Integrated Datasets is listed by: OMICtools is related to: Integrated Manually Extracted Annotation has parent organization: Jackson Laboratory |
Integrative Neuroscience Initiative on Alcoholism ; NIAAA U01 AA13499; NIAAA U24 AA13513; NIAAA R01 AA18776 |
PMID:22080549 PMID:19733230 |
Free, Freely available | r3d100012464, OMICS_02232, nif-0000-00517 | http://ontologicaldiscovery.org/ https://doi.org/10.17616/R3248T |
SCR_003009 | GeneWeaver, GeneWeaver - A system for the integration of functional genomics experiments, Ontological Discovery Environment, GeneWeaver.org | 2026-02-14 02:04:28 | 34 | |||||
|
RAVEN Resource Report Resource Website 100+ mentions |
RAVEN (RRID:SCR_001937) | RAVEN | data analysis service, analysis service resource, data or information resource, production service resource, service resource, database | Tool to search for putative regulatory genetic variation in your favorite gene. Single nucleotide polymorphisms (SNPs) (from dbSNP and user defined) are analyzed for overlap with potential transcription factor binding sites (TFBS) and phylogenetic footprinting using UCSC phastCons scores from multiple alignments of 8 vertebrate genomes., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | transcription factor binding site, phylogenetic footprint, regulatory sequence variation, genetic variation, in silico, regulatory sequence, FASEB list |
uses: Embassy-domsearch is listed by: OMICtools has parent organization: University of British Columbia; British Columbia; Canada |
PMID:18208319 | THIS RESOURCE IS NO LONGER IN SERVICE | OMICS_01932 | SCR_001937 | Regulatory analysis of Variation in Enhancers, RAVEN - Regulatory analysis of Variation in ENhancers | 2026-02-14 02:04:28 | 127 | ||||||
|
ChEA Resource Report Resource Website 100+ mentions |
ChEA (RRID:SCR_005403) | ChEA | data analysis service, analysis service resource, data or information resource, production service resource, service resource, software application, software resource, database | Data analysis service for gene-list enrichment analysis against a manual database. It allows users to input lists of mammalian gene symbols for which the program computes over-representation of transcription factor targets from the ChIP-X database. The database integrates interaction data from ChIP-chip, ChIP-seq, ChIP-PET and DamID studies and contains 189,933 interactions, manually extracted from 87 publications, describing the binding of 92 transcription factors to 31,932 target genes. | chip, transcription factor, interaction, mrna expression, gene, target gene, command-line, chip-chip, chip-seq |
is listed by: OMICtools has parent organization: Icahn School of Medicine at Mount Sinai; New York; USA |
PMID:20709693 | OMICS_00526 | SCR_005403 | ChIP Enrichment Analysis | 2026-02-14 02:04:29 | 256 | |||||||
|
SOURCE Resource Report Resource Website 50+ mentions |
SOURCE (RRID:SCR_005799) | SOURCE | data analysis service, analysis service resource, data or information resource, production service resource, service resource, database | SOURCE compiles information from several publicly accessible databases, including UniGene, dbEST, UniProt Knowledgebase, GeneMap99, RHdb, GeneCards and LocusLink. GO terms associated with LocusLink entries appear in SOURCE. The mission of SOURCE is to provide a unique scientific resource that pools publicly available data commonly sought after for any clone, GenBank accession number, or gene. SOURCE is specifically designed to facilitate the analysis of large sets of data that biologists can now produce using genome-scale experimental approaches Platform: Online tool | genomic, functional annotation, ontology, gene expression, gene, genome, statistical analysis, bio.tools, FASEB list |
is listed by: Gene Ontology Tools is listed by: Debian is listed by: bio.tools is related to: Gene Ontology has parent organization: SMD |
NIGMS ; NCI CA85129-04; NIGMS GM07365 |
PMID:12519986 | Restricted | biotools:source, nlx_149287 | https://login.stanford.edu/idp/profile/SAML2/Redirect/SSO?execution=e1s1 https://bio.tools/source |
SCR_005799 | 2026-02-14 02:04:29 | 69 | |||||
|
IDEAL - Intrinsically Disordered proteins with Extensive Annotations and Literature Resource Report Resource Website 10+ mentions |
IDEAL - Intrinsically Disordered proteins with Extensive Annotations and Literature (RRID:SCR_006027) | IDEAL | data analysis service, analysis service resource, data or information resource, production service resource, service resource, database | IDEAL, Intrinsically Disordered proteins with Extensive Annotations and Literature, is a collection of knowledge on experimentally verified intrinsically disordered proteins (IDPs) or intrinsically disordered regions (IDRs). IDEAL contains manually curated annotations on IDPs in locations, structures, and functional sites such as protein binding regions and posttranslational modification sites together with references and structural domain assignments. Protean segment One of the unique phenomena seen in IDPs is so-called the coupled folding and binding, where a short flexible segment can bind to its binding partner with forming a specific structure to act as a molecular recognition element. IDEAL explicitly annotates these regions as protean segment (ProS) when unstructured and structured information are both available in the region. Access to the data All the entries are tabulated in the list and individual entries can be retrieved by using the search tool at the upper-right corner in this page. IDEAL also provides the BLAST search, which can find homologs in IDEAL. All the information in IDEAL can be downloaded in the XML file. | intrinsically disordered protein, protein, intrinsically disordered region, region, location, structure, functional site, protein binding region, binding region, posttranslational modification site, reference, structural domain assignment, blast, homolog, simian virus 40, epstein-barr virus, human herpesvirus 1, residue, protean segment, bio.tools |
is listed by: Debian is listed by: bio.tools has parent organization: Nagoya University; Nagoya; Japan |
Japanese Ministry of Education Culture Sports Science and Technology MEXT | PMID:22067451 | biotools:ideal, nlx_151427 | https://bio.tools/ideal | SCR_006027 | IDEAL - Intrinsically Disordered proteins with Extensive Annotations Literature, Intrinsically Disordered proteins with Extensive Annotations and Literature | 2026-02-14 02:04:31 | 10 | |||||
|
Pathbase Resource Report Resource Website 10+ mentions |
Pathbase (RRID:SCR_006141) | Pathbase | ontology, data repository, storage service resource, web service, image repository, image collection, data or information resource, service resource, controlled vocabulary, data access protocol, software resource, database | Database of histopathology photomicrographs and macroscopic images derived from mutant or genetically manipulated mice. The database currently holds more than 1000 images of lesions from mutant mice and their inbred backgrounds and further images are being added continuously. Images can be retrieved by searching for specific lesions or class of lesion, by genetic locus, or by a wide set of parameters shown on the Advanced Search Interface. Its two key aims are: * To provide a searchable database of histopathology images derived from experimental manipulation of the mouse genome or experiments conducted on genetically manipulated mice. * A reference / didactic resource covering all aspects of mouse pathology Lesions are described according to the Pathbase pathology ontology developed by the Pathbase European Consortium, and are available at the site or on the Gene Ontology Consortium site - OBO. As this is a community resource, they encourage everyone to upload their own images, contribute comments to images and send them their feedback. Please feel free to use any of the SOAP/WSDL web services. (under development) | histopathology, photomicrograph, macroscopic, mutant, genetically manipulated, pathology, transgenic, rodent, mpath ontology, mouse pathology ontology, skinbase, genotype, skin, gene, tissue, hair, mutant mouse strain, bio.tools |
is listed by: bio.tools is listed by: Debian is related to: Gene Ontology has parent organization: University of Cambridge; Cambridge; United Kingdom is parent organization of: Mouse Pathology Ontology |
Lesion, Mutant mouse strain, Inbred mouse strain | North American Hair Research Society ; Ellison Medical Foundation ; European Union QLRI-1999-00320; European Union LSHG-CT-2006-037188; NCI CA089713; NCRR RR17436; NIH AR49288 |
PMID:20587689 PMID:15623888 PMID:14681470 |
Except where otherwise noted, Creative Commons Attribution-NonCommercial-ShareAlike License, v3 Unported, Images on the database remain the property of the persons generously allowing their images to be used and are acknowledged within each record. Images should not be modified, Reproduced or disseminated without the express permission of the submitter. | biotools:pathbase, nlx_151637 | https://bio.tools/pathbase | SCR_006141 | Pathbase - European mutant mouse pathology database | 2026-02-14 02:04:29 | 11 |
Can't find your Tool?
We recommend that you click next to the search bar to check some helpful tips on searches and refine your search firstly. Alternatively, please register your tool with the SciCrunch Registry by adding a little information to a web form, logging in will enable users to create a provisional RRID, but it not required to submit.
Welcome to the RRID Resources search. From here you can search through a compilation of resources used by RRID and see how data is organized within our community.
You are currently on the Community Resources tab looking through categories and sources that RRID has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.
If you have an account on RRID then you can log in from here to get additional features in RRID such as Collections, Saved Searches, and managing Resources.
Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:
If you are logged into RRID you can add data records to your collections to create custom spreadsheets across multiple sources of data.
Here are the facets that you can filter the data by.
If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.
