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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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CLUMP Resource Report Resource Website 100+ mentions |
CLUMP (RRID:SCR_007476) | CLUMP | software resource, software application | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 5th,2023. Software application that uses Monte Carlo method for assessing significance of a case-control association study with multi-allelic marker. (entry from Genetic Analysis Software). | gene, genetic, genomic, c, ms-dos | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154028 | SCR_007476 | 2026-02-07 02:14:20 | 104 | ||||||||
|
TREESCAN Resource Report Resource Website 10+ mentions |
TREESCAN (RRID:SCR_007108) | TREESCAN | software resource, software application | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on January 11, 2023. Software application that is intended to provide p-values for the hypothesis of association between evolutionary clades and continuous traits, using haplotype trees. (entry from Genetic Analysis Software) | gene, genetic, genomic, c, unix, ms-windows, ms-dos, macos, (x) | is listed by: Genetic Analysis Software | PMID:15681571 | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154011 | SCR_007108 | 2026-02-07 02:14:15 | 12 | |||||||
|
Whap Resource Report Resource Website 1+ mentions |
Whap (RRID:SCR_007103) | Whap | software resource, software application | THIS RESOURCE IS NO LONGER IN SERVICE, documented on July 24, 2015. This package is no longer supported. The majority of the functionality for conditional haplotype tests in population-based samples has been implemented in PLINK, with a better interface and more robust, faster computation: please use that from now on. Software tool to perform haplotype-based association analysis, for quantitative and qualitative traits, in population and family samples, using single nucleotide polymorphism or multiallelic marker data. What whap can do: * Analyze quantitative and qualitative traits * Handle unrelated individuals and/or parent-offspring trio data * Perform a regression-based haplotype association test for SNP data * Perform a secondary test based on pairwise haplotype similarity * Phase genotype data using a standard E-M approach, and handle ambiguity in E-M inferred haplotypes * Include covariates and moderator variables * Flexibly constrain effects across haplotypes to tested nested models * Perform a robust within-family test when parental genotypes are present * Analyze multiallelic markers (new) * Use dominant or recessive (new) genetic models (new) | gene, genetic, genomic, c, c++, unix, ms-windows, ms-dos, linux |
is listed by: Genetic Analysis Software is related to: PLINK |
MRC G9901258; NEI EY-12562 |
PMID:17118959 | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-31900 | SCR_007103 | 2026-02-07 02:14:15 | 9 | ||||||
|
MGA-MAPF2 Resource Report Resource Website |
MGA-MAPF2 (RRID:SCR_008108) | MGA-MAPF2 | software resource, software application | Software application that map QTLs in F-2 intercross in model organisms (entry from Genetic Analysis Software) | gene, genetic, genomic, fortran, ms-dos, ms-windows, (95/98/nt) | is listed by: Genetic Analysis Software | nlx_154478 | SCR_008108 | 2026-02-07 02:14:20 | 0 | |||||||||
|
ILR Resource Report Resource Website |
ILR (RRID:SCR_007895) | ILR | software resource, software application | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 5th,2023. Software application for calculation of the restricted likelihood-ratio affected sib-pair test for linkage allowing for imprinting (entry from Genetic Analysis Software) | gene, genetic, genomic, sas macro | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | SCR_007895 | Imprinting Likelihood Ratio | 2026-02-07 02:14:17 | 0 | ||||||||
|
SIBMED Resource Report Resource Website 1+ mentions |
SIBMED (RRID:SCR_007495) | SIBMED | software resource, software application | Software application that identifies likely genotyping errors and mutations for a sib pair in the context of multipoint mapping. (entry from Genetic Analysis Software) | gene, genetic, genomic, fortran 77, ms-windows, unix, bio.tools |
is listed by: Genetic Analysis Software is listed by: bio.tools is listed by: Debian |
biotools:sibmed, nlx_154043 | https://bio.tools/sibmed | SCR_007495 | SIBling Mutation and Error Detection | 2026-02-07 02:14:17 | 1 | |||||||
|
MAP MANAGER QT Resource Report Resource Website |
MAP MANAGER QT (RRID:SCR_008101) | MAP MANAGER QT | software resource, software application | A graphic, interactive program to map quantitative trait loci by regression methods; MAP MANAGER CLASSIC enhanced by quantitative trait mapping. (entry from Genetic Analysis Software) | gene, genetic, genomic, pascal, macos | is listed by: Genetic Analysis Software | nlx_154466 | SCR_008101 | 2026-02-07 02:14:18 | 0 | |||||||||
|
S Resource Report Resource Website |
S (RRID:SCR_007646) | S | software resource, software application | THIS RESOURCE IS NO LONGER IN SERVICE. Documented September 15, 2017. Software application (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154605 | SCR_007646 | 2026-02-07 02:14:17 | 0 | ||||||||
|
LDA Resource Report Resource Website |
LDA (RRID:SCR_007527) | LDA | software resource, software application | THIS RESOURCE IS NO LONGER IN SERVCE, documented September 22, 2016. A Java program for analyzing the pairwise linkage disequilibrium. | gene, genetic, genomic, java, ms-windows, linux, macos | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154088 | SCR_007527 | Linkage Disequilibrium Analyzer | 2026-02-07 02:14:17 | 0 | |||||||
|
RVTESTS Resource Report Resource Website 50+ mentions |
RVTESTS (RRID:SCR_007639) | RVTESTS | software resource, software application | Software application (entry from Genetic Analysis Software) | gene, genetic, genomic, c++ | is listed by: Genetic Analysis Software | nlx_154603 | SCR_007639 | Rare Variants TESTS | 2026-02-07 02:14:17 | 80 | ||||||||
|
HAPLO 1 Resource Report Resource Website |
HAPLO 1 (RRID:SCR_009058) | HAPLO 1 | software resource, software application | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 16,2023. Software application that assigns each person the haplotype with the highest conditional probability using Elston-Stewart algorithm (entry from Genetic Analysis Software) | gene, genetic, genomic, fortran 77, (ansi standard), unix, sunos, solaris, hp | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154039 | SCR_009058 | Haplotyping with computation of conditional probabilities | 2026-02-07 02:14:35 | 0 | |||||||
|
SCOUT Resource Report Resource Website 10+ mentions |
SCOUT (RRID:SCR_009054) | SCOUT | software resource, software application | Software program for conducting combined association analysis of triads and unrelated subjects (entry from Genetic Analysis Software) | gene, genetic, genomic, fortran (cvf 6.6) with imsl routines, ms-windows, (2000/xp) | is listed by: Genetic Analysis Software | nlx_154034 | SCR_009054 | 2026-02-07 02:14:22 | 39 | |||||||||
|
HAPLOREC Resource Report Resource Website 1+ mentions |
HAPLOREC (RRID:SCR_009055) | HAPLOREC | software resource, software application | Software application for population-based haplotyping (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | nlx_154036 | SCR_009055 | 2026-02-07 02:14:35 | 4 | |||||||||
|
SEGPATH Resource Report Resource Website 1+ mentions |
SEGPATH (RRID:SCR_009052) | SEGPATH | software resource, software application | THIS RESOURCE IS NO LONGER IN SERVICE, documented September 29, 2016. Software for segregation and pathway analysis. | gene, genetic, genomic | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154030 | http://www.biostat.wustl.edu/~mike/segpath/ | SCR_009052 | SEGregation analysis and PATH analysis | 2026-02-07 02:14:23 | 2 | ||||||
|
FASTMAP (2) Resource Report Resource Website 1+ mentions |
FASTMAP (2) (RRID:SCR_008635) | FASTMAP (2) | software resource, software application | THIS RESOURCE IS NO LONGER IN SERVICE. Documetned on May 12,2023. Software application (entry from Genetic Analysis Software) | gene, genetic, genomic, c, ms-dos | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154311 | SCR_008635 | 2026-02-07 02:14:20 | 1 | ||||||||
|
KIN Resource Report Resource Website |
KIN (RRID:SCR_009047) | KIN | software resource, software application | THIS RESOURCE IS NO LONGER IN SERVICE, documented September 29, 2016. Software application to calculate kinship coefficient or coefficient of coancestry (the probability that alleles at a given locus are identical by descent). | gene, genetic, genomic, ms-dos | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154022 | http://gnome.agrenv.mcgill.ca/tinker/kin.htm | SCR_009047 | 2026-02-07 02:14:23 | 0 | |||||||
|
GENOMESIMLA Resource Report Resource Website |
GENOMESIMLA (RRID:SCR_008990) | GENOMESIMLA | software resource, software application | Software application that is a forward-time population simulation method that can simulate realistic patterns of LD in both family-based and case-control datasets. (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | nlx_154348 | SCR_008990 | 2026-02-07 02:14:22 | 0 | |||||||||
|
GENOGRAM-MAKER Resource Report Resource Website |
GENOGRAM-MAKER (RRID:SCR_008751) | GENOGRAM-MAKER | software resource, software application | Software application that is a graphic way of organizing the mass of information gathered during a family assessment and finding patterns in the family system (entry from Genetic Analysis Software) | gene, genetic, genomic, ms-windows, macos | is listed by: Genetic Analysis Software | nlx_154314 | SCR_008751 | 2026-02-07 02:14:20 | 0 | |||||||||
|
FASTER Resource Report Resource Website 100+ mentions |
FASTER (RRID:SCR_009045) | FASTER | software resource, software application | Software application to reduce family members so the families can be used in GENEHUNTER program. FASTER eliminates the most redundant individuals according to the set of weights (preferences) (Age, Information about genetic Markers, etc.) The program has several features such as automatical reducement of branches without any affected individuals, etc. (entry from Genetic Analysis Software) | gene, genetic, genomic, ms-windows, (9x/me/2000/xp) | is listed by: Genetic Analysis Software | nlx_154020 | SCR_009045 | FAmily SmarT EliminatoR | 2026-02-07 02:14:22 | 337 | ||||||||
|
MULTIQTL Resource Report Resource Website 50+ mentions |
MULTIQTL (RRID:SCR_009043) | MULTIQTL | software resource, software application | Software application that integrates a broad spectrum of data mining, statistical analysis, interactive visualization and modeling tools that allow QTL analysis based on advanced and sophisticated methods for maximum extraction of the mapping information from data. (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | nlx_154016 | SCR_009043 | 2026-02-07 02:14:35 | 52 |
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